| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487722
Identifier: 103487722
GI number: 103487722
Start: 2353792
End: 2354586
Strand: Reverse
Name: 103487722
Synonym: Sala_2241
Alternate gene names: NA
Gene position: 2354586-2353792 (Counterclockwise)
Preceding gene: 103487723
Following gene: 103487721
Centisome position: 70.39
GC content: 70.06
Gene sequence:
>795_bases ATGACCGGCCCGATAGCGGCGATCGTCCTCGCGGGCAGCCGTCCCGGCGCCGACCCGCTGCTGGCGGGCAGCGGGGTGCC CACCAAGGCGCTGCTCCCCGTCGCGGGGCAGCCGATGCTGATCCATGTCGTGACCGCGCTGCGCGCCGCGCCAGAGGTAG GGGCGATCACCATATTGGCGCAGGACAGCGCAGCGCTCGCCGCCGAACCGGGCCTTGCGGGCATCGCCGACCTGCATTTT GCCACATCGGGGGAGGGGATCAGCAGCTCGCTCGCCGCCGCATTGCCGCCGGGCGACGATCCGCTGCTCGTGACCACCGC CGACAATGTGCTGCTCACCCCGGCGATGATCGCCGAGTTCCTGCGCGGCGCGGTGGACAGCGACGTCGCAGTCGCGATGG TCGAGCGTGACGTGCTGCTGGCGCACTATCCCGAATCGCGGCGGACCTGGCTGAAGTTCCGGGGCGGCTGGTGGTCGGGG GCGAACCTGTTTCGGCTGCGCGGGCAGCGCGTCCTGCCATTGCTCGATTTCTGGGGGCGGATCGAGCGTGACCGCAAAAA GGGGCTGAAGATTATCGCGGCTTTCGGCCCGTGGCTGCTCATCGGCGCGCTGCTGCGCCTGTTCACCATCCAGCAAGGGG TGGCGCGCGCGGGGCGGCGCTTTGGCCTTGCGGCGAAAGTGGTGCCGATGAGCGACCCCGTGGCGTGCATCGACGCCGAC AAGCCCGCCGACATCGCGCTGATCGAAGCGATATTTGCCGCGCGGGGCGAAGCGGCTATAGGGCGGCGCCTATGA
Upstream 100 bases:
>100_bases TCGCCGCGCCCTTTCGCAACCGCGGGCCGGTGCTCGACGAAGCGAGCGATTTCCTTCGCGGTGTCACCGCGCGCCGCATC GCGCCGGTGGACGCAGAGCG
Downstream 100 bases:
>100_bases CCATTTCCAAAGCCATCATCCTGTCGGCCGGACAGGGATCGCGTCTGTTGCCGTTGACGCGCGACATTCCCAAATGTCTG ATCGAACTGGGGGGCCGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 264; Mature: 263
Protein sequence:
>264_residues MTGPIAAIVLAGSRPGADPLLAGSGVPTKALLPVAGQPMLIHVVTALRAAPEVGAITILAQDSAALAAEPGLAGIADLHF ATSGEGISSSLAAALPPGDDPLLVTTADNVLLTPAMIAEFLRGAVDSDVAVAMVERDVLLAHYPESRRTWLKFRGGWWSG ANLFRLRGQRVLPLLDFWGRIERDRKKGLKIIAAFGPWLLIGALLRLFTIQQGVARAGRRFGLAAKVVPMSDPVACIDAD KPADIALIEAIFAARGEAAIGRRL
Sequences:
>Translated_264_residues MTGPIAAIVLAGSRPGADPLLAGSGVPTKALLPVAGQPMLIHVVTALRAAPEVGAITILAQDSAALAAEPGLAGIADLHF ATSGEGISSSLAAALPPGDDPLLVTTADNVLLTPAMIAEFLRGAVDSDVAVAMVERDVLLAHYPESRRTWLKFRGGWWSG ANLFRLRGQRVLPLLDFWGRIERDRKKGLKIIAAFGPWLLIGALLRLFTIQQGVARAGRRFGLAAKVVPMSDPVACIDAD KPADIALIEAIFAARGEAAIGRRL >Mature_263_residues TGPIAAIVLAGSRPGADPLLAGSGVPTKALLPVAGQPMLIHVVTALRAAPEVGAITILAQDSAALAAEPGLAGIADLHFA TSGEGISSSLAAALPPGDDPLLVTTADNVLLTPAMIAEFLRGAVDSDVAVAMVERDVLLAHYPESRRTWLKFRGGWWSGA NLFRLRGQRVLPLLDFWGRIERDRKKGLKIIAAFGPWLLIGALLRLFTIQQGVARAGRRFGLAAKVVPMSDPVACIDADK PADIALIEAIFAARGEAAIGRRL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27638; Mature: 27506
Theoretical pI: Translated: 9.85; Mature: 9.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGPIAAIVLAGSRPGADPLLAGSGVPTKALLPVAGQPMLIHVVTALRAAPEVGAITILA CCCCEEEEEEECCCCCCCCEEECCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCEEEEEE QDSAALAAEPGLAGIADLHFATSGEGISSSLAAALPPGDDPLLVTTADNVLLTPAMIAEF CCCCCEECCCCCCCHHHEEEECCCCCCHHHHHCCCCCCCCCEEEEECCCEEECHHHHHHH LRGAVDSDVAVAMVERDVLLAHYPESRRTWLKFRGGWWSGANLFRLRGQRVLPLLDFWGR HHCCCCCCCEEEEEHHCEEEEECCCCCCEEEEEECCEECCCCEEEECCCCCCHHHHHHHH IERDRKKGLKIIAAFGPWLLIGALLRLFTIQQGVARAGRRFGLAAKVVPMSDPVACIDAD HHHHHHCCEEEEEHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECC KPADIALIEAIFAARGEAAIGRRL CCCHHHHHHHHHHCCCCHHHCCCC >Mature Secondary Structure TGPIAAIVLAGSRPGADPLLAGSGVPTKALLPVAGQPMLIHVVTALRAAPEVGAITILA CCCEEEEEEECCCCCCCCEEECCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCEEEEEE QDSAALAAEPGLAGIADLHFATSGEGISSSLAAALPPGDDPLLVTTADNVLLTPAMIAEF CCCCCEECCCCCCCHHHEEEECCCCCCHHHHHCCCCCCCCCEEEEECCCEEECHHHHHHH LRGAVDSDVAVAMVERDVLLAHYPESRRTWLKFRGGWWSGANLFRLRGQRVLPLLDFWGR HHCCCCCCCEEEEEHHCEEEEECCCCCCEEEEEECCEECCCCEEEECCCCCCHHHHHHHH IERDRKKGLKIIAAFGPWLLIGALLRLFTIQQGVARAGRRFGLAAKVVPMSDPVACIDAD HHHHHHCCEEEEEHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECC KPADIALIEAIFAARGEAAIGRRL CCCHHHHHHHHHHCCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA