| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487718
Identifier: 103487718
GI number: 103487718
Start: 2350379
End: 2351518
Strand: Direct
Name: 103487718
Synonym: Sala_2237
Alternate gene names: NA
Gene position: 2350379-2351518 (Clockwise)
Preceding gene: 103487717
Following gene: 103487719
Centisome position: 70.26
GC content: 67.54
Gene sequence:
>1140_bases ATGCGCATCCTCTTCCTCTTCATCGGCGAGCCGCACCACCTGTTCCACGCGCTGCCCATCGCCGCCGAAATGGCCGCGAA GGGTCAGCCCGTCGAGGTCGCGGTGGCAAGCGCCGATCATCTGCCCGTCGCGCAGCAGGTCATGCTCGCCTATCCGGGCT TTGCGCCGCAAATCACGCTGCTCGGGCAAAAGGGCCTCGCGCGCTGGCTGCGCGCGCGCGGCCTGTTCCGCAATCCGCGC CTGCCGATCCTGCTCGACGCGCTGCCCTTCCTCCGCCGGTTCGACGCGATCGTCGTCCCCGAACGGACGACGACCAGCAT CCGTCATTTCCTGCCGCGCCGGACGCGCCTCATCTTCACGCCGCACGGCGCGGGCGACCGTGCGATCACCTTCGACGCGC GCGACCGCCGTTTCGATTTCGCACTCGTCGCGGGCGAAAAGAGCGAGGCACGGATGATCGAGGCCGGGACGATCCGCCCC GGCCATTATGCGGTCACCGGCTATGTGAAGCTCGACCTGATGCGCCGCCTGCAAAAGTCGCGCGCGCCGATTTTCGACAA TGACCGACCGACGATCCTCTATGCCCCGCATTTCCGGCGCGACCTGTCGTCGTGGGACCGGTTCGGGCGCGGAATCATCG ACTGGGTCGCGGCGCAGGACCGCTACAACCTGATCGTCGCTCCGCACGTCCGCCTGTTCGCCGAAGCGAGCGACGCCGAA CGGGCCGAAGTCGAACGCCGCGCCATTCCGGGCAAAATCCTTGTCGACCTGGGCTCCGAACGCCTGTTCGACATGAGTTA TACCAGCGGCGCCGACCTCTATCTCGGCGATGTCAGCAGCCAGGTGTATGAGTTTCTGGCGAAGCCTCGACCGTGTGTCT TCCTCAACGCGCATCGGGTCGACTGGGTCGGCGATCCCGACTATCTCTTCTGGACGCTTGGCGATGTCGTCGATGACCTC GCCGACCTGCCCGCCGCGCTCGACGCCGCCCCCGGCCGCCATCCGCTCTATGCCGATGCCCAGCGCGCGCGCCTCGCCGA ATCGATCGGCGGCGATCCCGCAGGCGCGGCGGCGCGCGGCGCCGAGGCGATCCTGCACTTTCTTGCAAAGGACGCCGGGC AGGATAAGAGCGGCGGATGA
Upstream 100 bases:
>100_bases TCGGGCGTAGCGCCAAGGTTGTGCGGCTTGCCGCCCAACATGGCTGGCAGGTCGCCGATTTCGAGGATGCCGCCGCAGGG GCGTCAACGGAGGTTCGTTG
Downstream 100 bases:
>100_bases CCGACGCCAAACCCCTCCCCGCGCTGACGCCGATCGGCGACAATCCCACCCTCATCTGGGGCATGACCAACGCCGAGCGC CTGCGGCGGCTGGCGCGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 379; Mature: 379
Protein sequence:
>379_residues MRILFLFIGEPHHLFHALPIAAEMAAKGQPVEVAVASADHLPVAQQVMLAYPGFAPQITLLGQKGLARWLRARGLFRNPR LPILLDALPFLRRFDAIVVPERTTTSIRHFLPRRTRLIFTPHGAGDRAITFDARDRRFDFALVAGEKSEARMIEAGTIRP GHYAVTGYVKLDLMRRLQKSRAPIFDNDRPTILYAPHFRRDLSSWDRFGRGIIDWVAAQDRYNLIVAPHVRLFAEASDAE RAEVERRAIPGKILVDLGSERLFDMSYTSGADLYLGDVSSQVYEFLAKPRPCVFLNAHRVDWVGDPDYLFWTLGDVVDDL ADLPAALDAAPGRHPLYADAQRARLAESIGGDPAGAAARGAEAILHFLAKDAGQDKSGG
Sequences:
>Translated_379_residues MRILFLFIGEPHHLFHALPIAAEMAAKGQPVEVAVASADHLPVAQQVMLAYPGFAPQITLLGQKGLARWLRARGLFRNPR LPILLDALPFLRRFDAIVVPERTTTSIRHFLPRRTRLIFTPHGAGDRAITFDARDRRFDFALVAGEKSEARMIEAGTIRP GHYAVTGYVKLDLMRRLQKSRAPIFDNDRPTILYAPHFRRDLSSWDRFGRGIIDWVAAQDRYNLIVAPHVRLFAEASDAE RAEVERRAIPGKILVDLGSERLFDMSYTSGADLYLGDVSSQVYEFLAKPRPCVFLNAHRVDWVGDPDYLFWTLGDVVDDL ADLPAALDAAPGRHPLYADAQRARLAESIGGDPAGAAARGAEAILHFLAKDAGQDKSGG >Mature_379_residues MRILFLFIGEPHHLFHALPIAAEMAAKGQPVEVAVASADHLPVAQQVMLAYPGFAPQITLLGQKGLARWLRARGLFRNPR LPILLDALPFLRRFDAIVVPERTTTSIRHFLPRRTRLIFTPHGAGDRAITFDARDRRFDFALVAGEKSEARMIEAGTIRP GHYAVTGYVKLDLMRRLQKSRAPIFDNDRPTILYAPHFRRDLSSWDRFGRGIIDWVAAQDRYNLIVAPHVRLFAEASDAE RAEVERRAIPGKILVDLGSERLFDMSYTSGADLYLGDVSSQVYEFLAKPRPCVFLNAHRVDWVGDPDYLFWTLGDVVDDL ADLPAALDAAPGRHPLYADAQRARLAESIGGDPAGAAARGAEAILHFLAKDAGQDKSGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42117; Mature: 42117
Theoretical pI: Translated: 8.88; Mature: 8.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRILFLFIGEPHHLFHALPIAAEMAAKGQPVEVAVASADHLPVAQQVMLAYPGFAPQITL CEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEEE LGQKGLARWLRARGLFRNPRLPILLDALPFLRRFDAIVVPERTTTSIRHFLPRRTRLIFT ECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCHHHHHHHCCCCEEEEEC PHGAGDRAITFDARDRRFDFALVAGEKSEARMIEAGTIRPGHYAVTGYVKLDLMRRLQKS CCCCCCCEEEECCCCCEEEEEEEECCCCCCEEEECCCCCCCCEEEEEHHHHHHHHHHHHH RAPIFDNDRPTILYAPHFRRDLSSWDRFGRGIIDWVAAQDRYNLIVAPHVRLFAEASDAE CCCCCCCCCCEEEECCHHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCEEEEECCCCCH RAEVERRAIPGKILVDLGSERLFDMSYTSGADLYLGDVSSQVYEFLAKPRPCVFLNAHRV HHHHHHHCCCCEEEEECCCCEEEEEECCCCCCEEEECHHHHHHHHHCCCCCEEEEECCEE DWVGDPDYLFWTLGDVVDDLADLPAALDAAPGRHPLYADAQRARLAESIGGDPAGAAARG CCCCCCCEEEEEHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHH AEAILHFLAKDAGQDKSGG HHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MRILFLFIGEPHHLFHALPIAAEMAAKGQPVEVAVASADHLPVAQQVMLAYPGFAPQITL CEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEEE LGQKGLARWLRARGLFRNPRLPILLDALPFLRRFDAIVVPERTTTSIRHFLPRRTRLIFT ECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCHHHHHHHCCCCEEEEEC PHGAGDRAITFDARDRRFDFALVAGEKSEARMIEAGTIRPGHYAVTGYVKLDLMRRLQKS CCCCCCCEEEECCCCCEEEEEEEECCCCCCEEEECCCCCCCCEEEEEHHHHHHHHHHHHH RAPIFDNDRPTILYAPHFRRDLSSWDRFGRGIIDWVAAQDRYNLIVAPHVRLFAEASDAE CCCCCCCCCCEEEECCHHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCEEEEECCCCCH RAEVERRAIPGKILVDLGSERLFDMSYTSGADLYLGDVSSQVYEFLAKPRPCVFLNAHRV HHHHHHHCCCCEEEEECCCCEEEEEECCCCCCEEEECHHHHHHHHHCCCCCEEEEECCEE DWVGDPDYLFWTLGDVVDDLADLPAALDAAPGRHPLYADAQRARLAESIGGDPAGAAARG CCCCCCCEEEEEHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHH AEAILHFLAKDAGQDKSGG HHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA