| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487719
Identifier: 103487719
GI number: 103487719
Start: 2351515
End: 2352618
Strand: Direct
Name: 103487719
Synonym: Sala_2238
Alternate gene names: NA
Gene position: 2351515-2352618 (Clockwise)
Preceding gene: 103487718
Following gene: 103487720
Centisome position: 70.3
GC content: 64.4
Gene sequence:
>1104_bases ATGACCGACGCCAAACCCCTCCCCGCGCTGACGCCGATCGGCGACAATCCCACCCTCATCTGGGGCATGACCAACGCCGA GCGCCTGCGGCGGCTGGCGCGCGCCGAGGGACTGCCCGACACGCCGGGCGCATCGGGCGCGCGGCTTTACGTCAATCTGG CCTATGTCTTCGATCCCGTGTGGTTGCGCCACGTCGTCGCGCTGCCCGGCACGGTGGTGATGGACGGCGATGCGCTGGTG ATGGCGCATCTGGTCGGCGGCATGACGCCGGACGATATTGCGGCCAACCGCAGCACGCTGTCGATCATCGACTATCAGGG CAATCCGCAAATCTATAACCGCCAGCTGCGCAAGCTCGACTGCCCCTTCATTCAGCCGCTGACCCGCGAAACGCGGCGCG CGATCGAGCGGAAGAGCTATTTCGGCGCCTATAAGGGCGTGACCGACGCGCTGACCAAATATCTCTGGCCCGAACTTGCG CTATGGCTGACGCGCGGTGCGGCGAGCATCGGCATGACGCCGAACATGGTGACGGCGATCGGCGCGGCGCTGTGCATCTA TGCGACCTGGCTCTTTGCGCAGGGCCAGTATTGGGAGGGGATGCTCGCGGGCTTCATCTTCATGGTGCTCGACACCGTCG ATGGAAAGCTCGCGCGCTGCACGATCACTTCGTCGAAATGGGGCAATGTCGCCGACCATGGCGTCGACCTCATTCACCCG CCCTTCTGGTGGTATTTCTGGGGCGTCGGGCTCGGCGCCTGGGGTCTCGCGCTGCCCGATCAGACCTTCCTGCTGGTGAT GATTGCTGTGGTCGCGGGCTATGTGCTCCAGCGCGTGATCGAGGGGTTGTTCATCAAGGATTTCGGCATGGACATCCATG TCTGGCGCCGGTTCGACAGCCAGTTCCGCCTGATCACCGCGCGGCGCAATCCCAATTTCGCAATCCTGTTCTTCGCGACG CTCGCCGGACGCCCCGACATCGGGCTGATCGCGGTGGCGTGGTGGACGGTCATCTCGCTGGTCGTCCATGCGGTGCAGTT GGTGCAAGCCTATGCAGAGCGGCGCGCTGGGCGCCCTATTGTCAGCTGGATGGAGGAAGCATGA
Upstream 100 bases:
>100_bases CCGAATCGATCGGCGGCGATCCCGCAGGCGCGGCGGCGCGCGGCGCCGAGGCGATCCTGCACTTTCTTGCAAAGGACGCC GGGCAGGATAAGAGCGGCGG
Downstream 100 bases:
>100_bases ACGAAACCATCGCAAAGTTCGGCCACCCGGCGACGCTGATCGCCGACTATGCGCATTGGGTCGTGCTGCTTCGCCCCGCG CAGCCGACGCTCGGCGCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: Phosphatidyltransferase; Phosphatidylglycerophosphate Synthase
Number of amino acids: Translated: 367; Mature: 366
Protein sequence:
>367_residues MTDAKPLPALTPIGDNPTLIWGMTNAERLRRLARAEGLPDTPGASGARLYVNLAYVFDPVWLRHVVALPGTVVMDGDALV MAHLVGGMTPDDIAANRSTLSIIDYQGNPQIYNRQLRKLDCPFIQPLTRETRRAIERKSYFGAYKGVTDALTKYLWPELA LWLTRGAASIGMTPNMVTAIGAALCIYATWLFAQGQYWEGMLAGFIFMVLDTVDGKLARCTITSSKWGNVADHGVDLIHP PFWWYFWGVGLGAWGLALPDQTFLLVMIAVVAGYVLQRVIEGLFIKDFGMDIHVWRRFDSQFRLITARRNPNFAILFFAT LAGRPDIGLIAVAWWTVISLVVHAVQLVQAYAERRAGRPIVSWMEEA
Sequences:
>Translated_367_residues MTDAKPLPALTPIGDNPTLIWGMTNAERLRRLARAEGLPDTPGASGARLYVNLAYVFDPVWLRHVVALPGTVVMDGDALV MAHLVGGMTPDDIAANRSTLSIIDYQGNPQIYNRQLRKLDCPFIQPLTRETRRAIERKSYFGAYKGVTDALTKYLWPELA LWLTRGAASIGMTPNMVTAIGAALCIYATWLFAQGQYWEGMLAGFIFMVLDTVDGKLARCTITSSKWGNVADHGVDLIHP PFWWYFWGVGLGAWGLALPDQTFLLVMIAVVAGYVLQRVIEGLFIKDFGMDIHVWRRFDSQFRLITARRNPNFAILFFAT LAGRPDIGLIAVAWWTVISLVVHAVQLVQAYAERRAGRPIVSWMEEA >Mature_366_residues TDAKPLPALTPIGDNPTLIWGMTNAERLRRLARAEGLPDTPGASGARLYVNLAYVFDPVWLRHVVALPGTVVMDGDALVM AHLVGGMTPDDIAANRSTLSIIDYQGNPQIYNRQLRKLDCPFIQPLTRETRRAIERKSYFGAYKGVTDALTKYLWPELAL WLTRGAASIGMTPNMVTAIGAALCIYATWLFAQGQYWEGMLAGFIFMVLDTVDGKLARCTITSSKWGNVADHGVDLIHPP FWWYFWGVGLGAWGLALPDQTFLLVMIAVVAGYVLQRVIEGLFIKDFGMDIHVWRRFDSQFRLITARRNPNFAILFFATL AGRPDIGLIAVAWWTVISLVVHAVQLVQAYAERRAGRPIVSWMEEA
Specific function: Unknown
COG id: COG0558
COG function: function code I; Phosphatidylglycerophosphate synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40914; Mature: 40783
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: PS00379 CDP_ALCOHOL_P_TRANSF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDAKPLPALTPIGDNPTLIWGMTNAERLRRLARAEGLPDTPGASGARLYVNLAYVFDPV CCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHH WLRHVVALPGTVVMDGDALVMAHLVGGMTPDDIAANRSTLSIIDYQGNPQIYNRQLRKLD HHHHHHHCCCEEEECCCHHHHHHHHCCCCCHHHHCCCCEEEEEEECCCCHHHHHHHHHCC CPFIQPLTRETRRAIERKSYFGAYKGVTDALTKYLWPELALWLTRGAASIGMTPNMVTAI CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHH GAALCIYATWLFAQGQYWEGMLAGFIFMVLDTVDGKLARCTITSSKWGNVADHGVDLIHP HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHCCCCCCCC PFWWYFWGVGLGAWGLALPDQTFLLVMIAVVAGYVLQRVIEGLFIKDFGMDIHVWRRFDS CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHCC QFRLITARRNPNFAILFFATLAGRPDIGLIAVAWWTVISLVVHAVQLVQAYAERRAGRPI CEEEEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH VSWMEEA HHHHHCC >Mature Secondary Structure TDAKPLPALTPIGDNPTLIWGMTNAERLRRLARAEGLPDTPGASGARLYVNLAYVFDPV CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHH WLRHVVALPGTVVMDGDALVMAHLVGGMTPDDIAANRSTLSIIDYQGNPQIYNRQLRKLD HHHHHHHCCCEEEECCCHHHHHHHHCCCCCHHHHCCCCEEEEEEECCCCHHHHHHHHHCC CPFIQPLTRETRRAIERKSYFGAYKGVTDALTKYLWPELALWLTRGAASIGMTPNMVTAI CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHH GAALCIYATWLFAQGQYWEGMLAGFIFMVLDTVDGKLARCTITSSKWGNVADHGVDLIHP HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHCCCCCCCC PFWWYFWGVGLGAWGLALPDQTFLLVMIAVVAGYVLQRVIEGLFIKDFGMDIHVWRRFDS CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHCC QFRLITARRNPNFAILFFATLAGRPDIGLIAVAWWTVISLVVHAVQLVQAYAERRAGRPI CEEEEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH VSWMEEA HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA