| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is cicA [H]
Identifier: 103487717
GI number: 103487717
Start: 2349669
End: 2350379
Strand: Direct
Name: cicA [H]
Synonym: Sala_2236
Alternate gene names: 103487717
Gene position: 2349669-2350379 (Clockwise)
Preceding gene: 103487716
Following gene: 103487718
Centisome position: 70.24
GC content: 72.86
Gene sequence:
>711_bases ATGACCGACACCCCGCCCCGCGTCGCCGTCTATGACCTCGACCGCACCGTGCTGCGCACCCCGACCTTCACGCTGTTCCT GCTGTGGGCGGCGTGGCGCGACGCACCGTGGCGGCTGCTGCTGCTCCCGGCGCTGGCGGCGCTGATGATCGGCCATGCGC TCGGCCTCTATGGCCGCGACCGGTTCAAGCCCGCGGCGATCCGGCTGATGCTCGGCGCCAGCATCGCGCCGACGCGCGCC CGGCGGCTCGCCGTGCGGTTCGCCGCGTGGCGCGTGCCGCGCGACGTGCCGCCGGGCGCCGCCGCCTGCATCGCGCGCGA CCGCGCCGAAGGCTTCCGGCTGCTGATGGCGACCGCGGCGCCCGAGTTTTACGCGGGCGCAATCGCCGACGCGCTCGGTT TCGATGCCATTGTCGCCTCGCGCCATCGCCGCGACGCGGACGGCAACTGGCTGCCGGCGCTCGACGGCTCCAATTGCTAT GGCGCCGAAAAGGCGCGGCGCGTCGCCGAATGGCTCGCCGCCAACGGCGCCGGGAACGCGCATATCCGCGCCTATTCGGA TCATGTCAGCGACGCGCCGACCTTTGCGCTGGCGCGCGAGGCGTGGCTCGTCGGGCGTAGCGCCAAGGTTGTGCGGCTTG CCGCCCAACATGGCTGGCAGGTCGCCGATTTCGAGGATGCCGCCGCAGGGGCGTCAACGGAGGTTCGTTGA
Upstream 100 bases:
>100_bases CGGCGATCTGGCTGGCGCTGCGCTTTGCGCTGCCGCTCGCCGATCGCGCCTCGCTCGGCAAGACGGCGCGCCGCCTCCGC CTGATCGGACCCGCCGACCG
Downstream 100 bases:
>100_bases TGCGCATCCTCTTCCTCTTCATCGGCGAGCCGCACCACCTGTTCCACGCGCTGCCCATCGCCGCCGAAATGGCCGCGAAG GGTCAGCCCGTCGAGGTCGC
Product: HAD family hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 236; Mature: 235
Protein sequence:
>236_residues MTDTPPRVAVYDLDRTVLRTPTFTLFLLWAAWRDAPWRLLLLPALAALMIGHALGLYGRDRFKPAAIRLMLGASIAPTRA RRLAVRFAAWRVPRDVPPGAAACIARDRAEGFRLLMATAAPEFYAGAIADALGFDAIVASRHRRDADGNWLPALDGSNCY GAEKARRVAEWLAANGAGNAHIRAYSDHVSDAPTFALAREAWLVGRSAKVVRLAAQHGWQVADFEDAAAGASTEVR
Sequences:
>Translated_236_residues MTDTPPRVAVYDLDRTVLRTPTFTLFLLWAAWRDAPWRLLLLPALAALMIGHALGLYGRDRFKPAAIRLMLGASIAPTRA RRLAVRFAAWRVPRDVPPGAAACIARDRAEGFRLLMATAAPEFYAGAIADALGFDAIVASRHRRDADGNWLPALDGSNCY GAEKARRVAEWLAANGAGNAHIRAYSDHVSDAPTFALAREAWLVGRSAKVVRLAAQHGWQVADFEDAAAGASTEVR >Mature_235_residues TDTPPRVAVYDLDRTVLRTPTFTLFLLWAAWRDAPWRLLLLPALAALMIGHALGLYGRDRFKPAAIRLMLGASIAPTRAR RLAVRFAAWRVPRDVPPGAAACIARDRAEGFRLLMATAAPEFYAGAIADALGFDAIVASRHRRDADGNWLPALDGSNCYG AEKARRVAEWLAANGAGNAHIRAYSDHVSDAPTFALAREAWLVGRSAKVVRLAAQHGWQVADFEDAAAGASTEVR
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR006385 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: NA
Molecular weight: Translated: 25626; Mature: 25494
Theoretical pI: Translated: 10.32; Mature: 10.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTPPRVAVYDLDRTVLRTPTFTLFLLWAAWRDAPWRLLLLPALAALMIGHALGLYGRD CCCCCCCEEEEECCCHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC RFKPAAIRLMLGASIAPTRARRLAVRFAAWRVPRDVPPGAAACIARDRAEGFRLLMATAA CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEEEEECCC PEFYAGAIADALGFDAIVASRHRRDADGNWLPALDGSNCYGAEKARRVAEWLAANGAGNA CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCC HIRAYSDHVSDAPTFALAREAWLVGRSAKVVRLAAQHGWQVADFEDAAAGASTEVR EEEEECCCCCCCCHHHHHHHHHHCCCCHHHEEEHHHCCCEECCCHHHCCCCCCCCC >Mature Secondary Structure TDTPPRVAVYDLDRTVLRTPTFTLFLLWAAWRDAPWRLLLLPALAALMIGHALGLYGRD CCCCCCEEEEECCCHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC RFKPAAIRLMLGASIAPTRARRLAVRFAAWRVPRDVPPGAAACIARDRAEGFRLLMATAA CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEEEEECCC PEFYAGAIADALGFDAIVASRHRRDADGNWLPALDGSNCYGAEKARRVAEWLAANGAGNA CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCC HIRAYSDHVSDAPTFALAREAWLVGRSAKVVRLAAQHGWQVADFEDAAAGASTEVR EEEEECCCCCCCCHHHHHHHHHHCCCCHHHEEEHHHCCCEECCCHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11169108 [H]