Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487716

Identifier: 103487716

GI number: 103487716

Start: 2348065

End: 2349672

Strand: Direct

Name: 103487716

Synonym: Sala_2235

Alternate gene names: NA

Gene position: 2348065-2349672 (Clockwise)

Preceding gene: 103487712

Following gene: 103487717

Centisome position: 70.19

GC content: 69.96

Gene sequence:

>1608_bases
ATGCGCCGGCAATTCGCGAAAGCCGCTGGCGGCGCGGCTGACGAGCCGCTAGGGGCGGCAACGATGAGCGACGACGCCGA
CCATTCTGCCGTCACCAGCCGCAGCGTCGCGCGCGGGCTCGGCACGACGGTCCTCGCGCGCCTCGGCGCGGTGGTCGAGA
TCGTCGCGCAGCCGCTCTATGTGCTGATGTTCGGGCTTGCGGGTTACGGCCTTTACGCCGTGCTGTGGGCGGCGGTGAAC
CTCATCGAAAATATCTTCGACCTCGGCATGACCAGCGCGATGCAGCGCACCGTCCCGCAATCGGCAAGCGATGTCGAGGC
GGCGGCGGCGCTGCGCACCGCGATGATCTTCGGCGTCGGCCCCTGCATCCTTGTCGCTGCGCTGATTACCCTGTTCGCCG
CCGAGCTGGGGCCGCTTCTCAACGTCGCGGCAAAGGACCGCCCGCTCGTCATCCCGGCGATCCGGATTTTCGTCTGGGCG
CTGCCGCTCTGGGCGTTCGTCGAAATCGCGACCTCGGCGCTGCGCGCGCGGATGGTGTTCGGCGCCGAAATCCGGCTGCG
GATCGTGTGGGAGCAATTGCTGCGCCTCGTCTTCGCGGGCCTGTTCTTTGCGGGCGGCTTCGGCCTCAAGGGCCTGTTCA
TCGCGCATCTCTGCTCGCTGGCGATCACCGCCGCGCTGTCGGTCCGCCTGCTTGCGCGGCAATATAGCTTTGCCGATCTT
TGGCGCGGTCCGTGGGACGGTCAGACGTCGCGCGACACTTTCTGGGCGGGGCTGTCGATCCTTCCCTCGAATGTCATCAC
GCGGCTGTTCGGCGACGCGCCCGCGCTGGTCCTCAACATGCTGCTCCCCGGCGCGGCGGGGGCCGCGGCGGCGGGCCTCT
TCACCATTGCGCGCAAGCTGTCGAGCGTGGTGCAGCTTGTGCGCATCGCCTTCACCTATGTCATGGCGCCACTCGCCGCG
AGCGCCGAGCGTCGCGACCGGCGACAGGTTGCCGACATCTATGCCTATGCGACGCGGCTGATCGCGGCGATCGCGCTGCC
GCTCGCCGCCGTGCTCGCCGCCGGCAGCGCCTCGCTGCTCAGCCTGTTCGGCGATCAGGCGCAGGCGGCGCAGGCGGCGC
TGGTCATCCTGCTTTTCGCGCGCGCGGTCGAGGCGGTGCTCGGCATCTCCGCGCCGGTGTTGCAGGTCGTCGCCGCCTTT
CGCCACCAGCTCACCGCCAGCATCATCGGGGTTGCCGTCGCCGTCGCCGCCGGATGGCTGATGGTCGGCCATATCGATCC
GCTGACCGGCGTGACGCTGGCGACGGCGATCGGGCTGGTCGTGATGGCCGCAATCCCGACGCTGCAACTCGCCGTGGTCG
AGCGGCTCCATCCCTTCGATGCGCAATTCCCCGCGGTCGCGCTGCGCGGGATCGGCGTCACGATCGTCGCCGGGCTTGCC
GCGATGCTCGCCGACCTGCTCCCCGACCCGGTCGCGCTGCCCTTGCTGCTCATCATCGCCGCGGCGGCGATCTGGCTGGC
GCTGCGCTTTGCGCTGCCGCTCGCCGATCGCGCCTCGCTCGGCAAGACGGCGCGCCGCCTCCGCCTGATCGGACCCGCCG
ACCGATGA

Upstream 100 bases:

>100_bases
GGCGGCTGTTCTTGGGCAGGCGGAATTCGGCCATGTCGGGCTCCCATGATGCAGTCGCGGGTCCGACTAGACCCGATTGG
CGGCGGCGACAAGGGGGGTG

Downstream 100 bases:

>100_bases
CCGACACCCCGCCCCGCGTCGCCGTCTATGACCTCGACCGCACCGTGCTGCGCACCCCGACCTTCACGCTGTTCCTGCTG
TGGGCGGCGTGGCGCGACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 535; Mature: 535

Protein sequence:

>535_residues
MRRQFAKAAGGAADEPLGAATMSDDADHSAVTSRSVARGLGTTVLARLGAVVEIVAQPLYVLMFGLAGYGLYAVLWAAVN
LIENIFDLGMTSAMQRTVPQSASDVEAAAALRTAMIFGVGPCILVAALITLFAAELGPLLNVAAKDRPLVIPAIRIFVWA
LPLWAFVEIATSALRARMVFGAEIRLRIVWEQLLRLVFAGLFFAGGFGLKGLFIAHLCSLAITAALSVRLLARQYSFADL
WRGPWDGQTSRDTFWAGLSILPSNVITRLFGDAPALVLNMLLPGAAGAAAAGLFTIARKLSSVVQLVRIAFTYVMAPLAA
SAERRDRRQVADIYAYATRLIAAIALPLAAVLAAGSASLLSLFGDQAQAAQAALVILLFARAVEAVLGISAPVLQVVAAF
RHQLTASIIGVAVAVAAGWLMVGHIDPLTGVTLATAIGLVVMAAIPTLQLAVVERLHPFDAQFPAVALRGIGVTIVAGLA
AMLADLLPDPVALPLLLIIAAAAIWLALRFALPLADRASLGKTARRLRLIGPADR

Sequences:

>Translated_535_residues
MRRQFAKAAGGAADEPLGAATMSDDADHSAVTSRSVARGLGTTVLARLGAVVEIVAQPLYVLMFGLAGYGLYAVLWAAVN
LIENIFDLGMTSAMQRTVPQSASDVEAAAALRTAMIFGVGPCILVAALITLFAAELGPLLNVAAKDRPLVIPAIRIFVWA
LPLWAFVEIATSALRARMVFGAEIRLRIVWEQLLRLVFAGLFFAGGFGLKGLFIAHLCSLAITAALSVRLLARQYSFADL
WRGPWDGQTSRDTFWAGLSILPSNVITRLFGDAPALVLNMLLPGAAGAAAAGLFTIARKLSSVVQLVRIAFTYVMAPLAA
SAERRDRRQVADIYAYATRLIAAIALPLAAVLAAGSASLLSLFGDQAQAAQAALVILLFARAVEAVLGISAPVLQVVAAF
RHQLTASIIGVAVAVAAGWLMVGHIDPLTGVTLATAIGLVVMAAIPTLQLAVVERLHPFDAQFPAVALRGIGVTIVAGLA
AMLADLLPDPVALPLLLIIAAAAIWLALRFALPLADRASLGKTARRLRLIGPADR
>Mature_535_residues
MRRQFAKAAGGAADEPLGAATMSDDADHSAVTSRSVARGLGTTVLARLGAVVEIVAQPLYVLMFGLAGYGLYAVLWAAVN
LIENIFDLGMTSAMQRTVPQSASDVEAAAALRTAMIFGVGPCILVAALITLFAAELGPLLNVAAKDRPLVIPAIRIFVWA
LPLWAFVEIATSALRARMVFGAEIRLRIVWEQLLRLVFAGLFFAGGFGLKGLFIAHLCSLAITAALSVRLLARQYSFADL
WRGPWDGQTSRDTFWAGLSILPSNVITRLFGDAPALVLNMLLPGAAGAAAAGLFTIARKLSSVVQLVRIAFTYVMAPLAA
SAERRDRRQVADIYAYATRLIAAIALPLAAVLAAGSASLLSLFGDQAQAAQAALVILLFARAVEAVLGISAPVLQVVAAF
RHQLTASIIGVAVAVAAGWLMVGHIDPLTGVTLATAIGLVVMAAIPTLQLAVVERLHPFDAQFPAVALRGIGVTIVAGLA
AMLADLLPDPVALPLLLIIAAAAIWLALRFALPLADRASLGKTARRLRLIGPADR

Specific function: Unknown

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56029; Mature: 56029

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure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HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA