Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487712

Identifier: 103487712

GI number: 103487712

Start: 2344542

End: 2345639

Strand: Direct

Name: 103487712

Synonym: Sala_2231

Alternate gene names: NA

Gene position: 2344542-2345639 (Clockwise)

Preceding gene: 103487705

Following gene: 103487716

Centisome position: 70.09

GC content: 67.58

Gene sequence:

>1098_bases
TTGCCGCAGCGGCAGATTAACCCTCCCTTATCCCCGTTTTGTTACGCGCGAGCGGTGACGCGCGCGATCATCAGCTTCGA
CACCGAATTGTCGGCGGGCCTCTATCAACGGGGCGAGGGCGCGCGCGCCAATTTCGAAAGCTCGATCCTCGGCCGCTGCC
GCGAGGGCGATTTCGGCATCATCTTCCAGATGGACATGCTCGAAAGATACGGCCTCCAGGGCGTGTTCTTCGTCGATCCG
ATGCCCGCGCTCGTCCACGGGCCGTCGATCGTCCGCGACATCGTCGCGCCCATCGTCGCGCGCGGGCACGAGGTGCAGCT
TCACATCCACACCGAATGGCTCGCCTTCGCGCGCTTCAATCCCGTCGGGCGGCTCACCGGGCGCAATATCGGCGATTTCC
CGCTCGCCGCGCAGAAAAAGCTGATCGGGCTGGCGGCGGACATGCTGGTGCGCGCCGGCGCGCCCGACCCGGTCGCCTTT
CGCGCCGGCAATTTCGGCGCCAACGACGATACGCTGCGCGCGCTCGCGGCGCTGGGTTTCGCCTATGACAGCAGCTTCAA
CGGCGCCTATCTCGGCCATGGTTGCGACATCGCACTCGACCGCACCAATATCGGGATGCGAATGCACCATGGCGTGTGCG
AAGTACCGGTCAGCGGCCTCATGGACCGCGCCGACAGCTTTCGCCCCGCGCAGCTGTGCGCCATGTCCGAAGAGGAAATG
CGCGATGCGTTGGCTCATGCGGCGGCCAGCGGCGCGATCCAGTTCTCGGCCTTCAGCCACAGTTTCGAGCTGTTGAGCCG
CGATCGCGCCGTCGCCAACCGGCTGGCGATCGCACGCATGGAGGCATTGTGCGCGGCGGTCGCCGCCGATCCCCGCGTGA
CCAGCGGCGGCTTCGCCGACCTGCCCCCGCCCCCCGCGCAGCCGGGCGCCATCCGACTGCCCGAACCGCGTCCGCTCCGC
ACGTTGCGCCGCACCGCAGAACAGGCCGTTGGGCACCTCGCCCACGAGGTGCGTTACGTCCGCAGCCTCGCCTATGTCAC
CGCCAACACCTCACGCTGGGGGAAGATTGCCGGGGGAATCCTCCTGGCCATGGCCTAG

Upstream 100 bases:

>100_bases
GAAAAGCGGGATTTTCAGCCTTTTTTTGCTATTAGTTCGCAATATCTTTTGTCAATGAGCCCGCAGTCCGGCGATCGCGA
TCGCCCGTTGCGCCTGAGCT

Downstream 100 bases:

>100_bases
GGCGAGGTAGTCGTCCGACTGCATCTCCGCGAGGCGGCTCGCCGTGCGCTCGAACTCGAACGCGCCGTCGCCCGCGACAT
AAAGCTGGTCGGGCATCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: Polysaccharide Deacetylase Family Protein

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MPQRQINPPLSPFCYARAVTRAIISFDTELSAGLYQRGEGARANFESSILGRCREGDFGIIFQMDMLERYGLQGVFFVDP
MPALVHGPSIVRDIVAPIVARGHEVQLHIHTEWLAFARFNPVGRLTGRNIGDFPLAAQKKLIGLAADMLVRAGAPDPVAF
RAGNFGANDDTLRALAALGFAYDSSFNGAYLGHGCDIALDRTNIGMRMHHGVCEVPVSGLMDRADSFRPAQLCAMSEEEM
RDALAHAAASGAIQFSAFSHSFELLSRDRAVANRLAIARMEALCAAVAADPRVTSGGFADLPPPPAQPGAIRLPEPRPLR
TLRRTAEQAVGHLAHEVRYVRSLAYVTANTSRWGKIAGGILLAMA

Sequences:

>Translated_365_residues
MPQRQINPPLSPFCYARAVTRAIISFDTELSAGLYQRGEGARANFESSILGRCREGDFGIIFQMDMLERYGLQGVFFVDP
MPALVHGPSIVRDIVAPIVARGHEVQLHIHTEWLAFARFNPVGRLTGRNIGDFPLAAQKKLIGLAADMLVRAGAPDPVAF
RAGNFGANDDTLRALAALGFAYDSSFNGAYLGHGCDIALDRTNIGMRMHHGVCEVPVSGLMDRADSFRPAQLCAMSEEEM
RDALAHAAASGAIQFSAFSHSFELLSRDRAVANRLAIARMEALCAAVAADPRVTSGGFADLPPPPAQPGAIRLPEPRPLR
TLRRTAEQAVGHLAHEVRYVRSLAYVTANTSRWGKIAGGILLAMA
>Mature_364_residues
PQRQINPPLSPFCYARAVTRAIISFDTELSAGLYQRGEGARANFESSILGRCREGDFGIIFQMDMLERYGLQGVFFVDPM
PALVHGPSIVRDIVAPIVARGHEVQLHIHTEWLAFARFNPVGRLTGRNIGDFPLAAQKKLIGLAADMLVRAGAPDPVAFR
AGNFGANDDTLRALAALGFAYDSSFNGAYLGHGCDIALDRTNIGMRMHHGVCEVPVSGLMDRADSFRPAQLCAMSEEEMR
DALAHAAASGAIQFSAFSHSFELLSRDRAVANRLAIARMEALCAAVAADPRVTSGGFADLPPPPAQPGAIRLPEPRPLRT
LRRTAEQAVGHLAHEVRYVRSLAYVTANTSRWGKIAGGILLAMA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39415; Mature: 39284

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQRQINPPLSPFCYARAVTRAIISFDTELSAGLYQRGEGARANFESSILGRCREGDFGI
CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCEEE
IFQMDMLERYGLQGVFFVDPMPALVHGPSIVRDIVAPIVARGHEVQLHIHTEWLAFARFN
EEEEHHHHHCCCCEEEEECCCHHHHCCHHHHHHHHHHHHHCCCEEEEEEEHHEEEHHHCC
PVGRLTGRNIGDFPLAAQKKLIGLAADMLVRAGAPDPVAFRAGNFGANDDTLRALAALGF
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHH
AYDSSFNGAYLGHGCDIALDRTNIGMRMHHGVCEVPVSGLMDRADSFRPAQLCAMSEEEM
HHCCCCCCEEECCCCEEEEECCCCCEEECCCCHHCCHHHHHHHHCCCCHHHHHHCCHHHH
RDALAHAAASGAIQFSAFSHSFELLSRDRAVANRLAIARMEALCAAVAADPRVTSGGFAD
HHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
LPPPPAQPGAIRLPEPRPLRTLRRTAEQAVGHLAHEVRYVRSLAYVTANTSRWGKIAGGI
CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHCCE
LLAMA
EEEEC
>Mature Secondary Structure 
PQRQINPPLSPFCYARAVTRAIISFDTELSAGLYQRGEGARANFESSILGRCREGDFGI
CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCEEE
IFQMDMLERYGLQGVFFVDPMPALVHGPSIVRDIVAPIVARGHEVQLHIHTEWLAFARFN
EEEEHHHHHCCCCEEEEECCCHHHHCCHHHHHHHHHHHHHCCCEEEEEEEHHEEEHHHCC
PVGRLTGRNIGDFPLAAQKKLIGLAADMLVRAGAPDPVAFRAGNFGANDDTLRALAALGF
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHH
AYDSSFNGAYLGHGCDIALDRTNIGMRMHHGVCEVPVSGLMDRADSFRPAQLCAMSEEEM
HHCCCCCCEEECCCCEEEEECCCCCEEECCCCHHCCHHHHHHHHCCCCHHHHHHCCHHHH
RDALAHAAASGAIQFSAFSHSFELLSRDRAVANRLAIARMEALCAAVAADPRVTSGGFAD
HHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
LPPPPAQPGAIRLPEPRPLRTLRRTAEQAVGHLAHEVRYVRSLAYVTANTSRWGKIAGGI
CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHCCE
LLAMA
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA