| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487712
Identifier: 103487712
GI number: 103487712
Start: 2344542
End: 2345639
Strand: Direct
Name: 103487712
Synonym: Sala_2231
Alternate gene names: NA
Gene position: 2344542-2345639 (Clockwise)
Preceding gene: 103487705
Following gene: 103487716
Centisome position: 70.09
GC content: 67.58
Gene sequence:
>1098_bases TTGCCGCAGCGGCAGATTAACCCTCCCTTATCCCCGTTTTGTTACGCGCGAGCGGTGACGCGCGCGATCATCAGCTTCGA CACCGAATTGTCGGCGGGCCTCTATCAACGGGGCGAGGGCGCGCGCGCCAATTTCGAAAGCTCGATCCTCGGCCGCTGCC GCGAGGGCGATTTCGGCATCATCTTCCAGATGGACATGCTCGAAAGATACGGCCTCCAGGGCGTGTTCTTCGTCGATCCG ATGCCCGCGCTCGTCCACGGGCCGTCGATCGTCCGCGACATCGTCGCGCCCATCGTCGCGCGCGGGCACGAGGTGCAGCT TCACATCCACACCGAATGGCTCGCCTTCGCGCGCTTCAATCCCGTCGGGCGGCTCACCGGGCGCAATATCGGCGATTTCC CGCTCGCCGCGCAGAAAAAGCTGATCGGGCTGGCGGCGGACATGCTGGTGCGCGCCGGCGCGCCCGACCCGGTCGCCTTT CGCGCCGGCAATTTCGGCGCCAACGACGATACGCTGCGCGCGCTCGCGGCGCTGGGTTTCGCCTATGACAGCAGCTTCAA CGGCGCCTATCTCGGCCATGGTTGCGACATCGCACTCGACCGCACCAATATCGGGATGCGAATGCACCATGGCGTGTGCG AAGTACCGGTCAGCGGCCTCATGGACCGCGCCGACAGCTTTCGCCCCGCGCAGCTGTGCGCCATGTCCGAAGAGGAAATG CGCGATGCGTTGGCTCATGCGGCGGCCAGCGGCGCGATCCAGTTCTCGGCCTTCAGCCACAGTTTCGAGCTGTTGAGCCG CGATCGCGCCGTCGCCAACCGGCTGGCGATCGCACGCATGGAGGCATTGTGCGCGGCGGTCGCCGCCGATCCCCGCGTGA CCAGCGGCGGCTTCGCCGACCTGCCCCCGCCCCCCGCGCAGCCGGGCGCCATCCGACTGCCCGAACCGCGTCCGCTCCGC ACGTTGCGCCGCACCGCAGAACAGGCCGTTGGGCACCTCGCCCACGAGGTGCGTTACGTCCGCAGCCTCGCCTATGTCAC CGCCAACACCTCACGCTGGGGGAAGATTGCCGGGGGAATCCTCCTGGCCATGGCCTAG
Upstream 100 bases:
>100_bases GAAAAGCGGGATTTTCAGCCTTTTTTTGCTATTAGTTCGCAATATCTTTTGTCAATGAGCCCGCAGTCCGGCGATCGCGA TCGCCCGTTGCGCCTGAGCT
Downstream 100 bases:
>100_bases GGCGAGGTAGTCGTCCGACTGCATCTCCGCGAGGCGGCTCGCCGTGCGCTCGAACTCGAACGCGCCGTCGCCCGCGACAT AAAGCTGGTCGGGCATCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: Polysaccharide Deacetylase Family Protein
Number of amino acids: Translated: 365; Mature: 364
Protein sequence:
>365_residues MPQRQINPPLSPFCYARAVTRAIISFDTELSAGLYQRGEGARANFESSILGRCREGDFGIIFQMDMLERYGLQGVFFVDP MPALVHGPSIVRDIVAPIVARGHEVQLHIHTEWLAFARFNPVGRLTGRNIGDFPLAAQKKLIGLAADMLVRAGAPDPVAF RAGNFGANDDTLRALAALGFAYDSSFNGAYLGHGCDIALDRTNIGMRMHHGVCEVPVSGLMDRADSFRPAQLCAMSEEEM RDALAHAAASGAIQFSAFSHSFELLSRDRAVANRLAIARMEALCAAVAADPRVTSGGFADLPPPPAQPGAIRLPEPRPLR TLRRTAEQAVGHLAHEVRYVRSLAYVTANTSRWGKIAGGILLAMA
Sequences:
>Translated_365_residues MPQRQINPPLSPFCYARAVTRAIISFDTELSAGLYQRGEGARANFESSILGRCREGDFGIIFQMDMLERYGLQGVFFVDP MPALVHGPSIVRDIVAPIVARGHEVQLHIHTEWLAFARFNPVGRLTGRNIGDFPLAAQKKLIGLAADMLVRAGAPDPVAF RAGNFGANDDTLRALAALGFAYDSSFNGAYLGHGCDIALDRTNIGMRMHHGVCEVPVSGLMDRADSFRPAQLCAMSEEEM RDALAHAAASGAIQFSAFSHSFELLSRDRAVANRLAIARMEALCAAVAADPRVTSGGFADLPPPPAQPGAIRLPEPRPLR TLRRTAEQAVGHLAHEVRYVRSLAYVTANTSRWGKIAGGILLAMA >Mature_364_residues PQRQINPPLSPFCYARAVTRAIISFDTELSAGLYQRGEGARANFESSILGRCREGDFGIIFQMDMLERYGLQGVFFVDPM PALVHGPSIVRDIVAPIVARGHEVQLHIHTEWLAFARFNPVGRLTGRNIGDFPLAAQKKLIGLAADMLVRAGAPDPVAFR AGNFGANDDTLRALAALGFAYDSSFNGAYLGHGCDIALDRTNIGMRMHHGVCEVPVSGLMDRADSFRPAQLCAMSEEEMR DALAHAAASGAIQFSAFSHSFELLSRDRAVANRLAIARMEALCAAVAADPRVTSGGFADLPPPPAQPGAIRLPEPRPLRT LRRTAEQAVGHLAHEVRYVRSLAYVTANTSRWGKIAGGILLAMA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39415; Mature: 39284
Theoretical pI: Translated: 8.16; Mature: 8.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQRQINPPLSPFCYARAVTRAIISFDTELSAGLYQRGEGARANFESSILGRCREGDFGI CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCEEE IFQMDMLERYGLQGVFFVDPMPALVHGPSIVRDIVAPIVARGHEVQLHIHTEWLAFARFN EEEEHHHHHCCCCEEEEECCCHHHHCCHHHHHHHHHHHHHCCCEEEEEEEHHEEEHHHCC PVGRLTGRNIGDFPLAAQKKLIGLAADMLVRAGAPDPVAFRAGNFGANDDTLRALAALGF CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHH AYDSSFNGAYLGHGCDIALDRTNIGMRMHHGVCEVPVSGLMDRADSFRPAQLCAMSEEEM HHCCCCCCEEECCCCEEEEECCCCCEEECCCCHHCCHHHHHHHHCCCCHHHHHHCCHHHH RDALAHAAASGAIQFSAFSHSFELLSRDRAVANRLAIARMEALCAAVAADPRVTSGGFAD HHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC LPPPPAQPGAIRLPEPRPLRTLRRTAEQAVGHLAHEVRYVRSLAYVTANTSRWGKIAGGI CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHCCE LLAMA EEEEC >Mature Secondary Structure PQRQINPPLSPFCYARAVTRAIISFDTELSAGLYQRGEGARANFESSILGRCREGDFGI CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCEEE IFQMDMLERYGLQGVFFVDPMPALVHGPSIVRDIVAPIVARGHEVQLHIHTEWLAFARFN EEEEHHHHHCCCCEEEEECCCHHHHCCHHHHHHHHHHHHHCCCEEEEEEEHHEEEHHHCC PVGRLTGRNIGDFPLAAQKKLIGLAADMLVRAGAPDPVAFRAGNFGANDDTLRALAALGF CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHH AYDSSFNGAYLGHGCDIALDRTNIGMRMHHGVCEVPVSGLMDRADSFRPAQLCAMSEEEM HHCCCCCCEEECCCCEEEEECCCCCEEECCCCHHCCHHHHHHHHCCCCHHHHHHCCHHHH RDALAHAAASGAIQFSAFSHSFELLSRDRAVANRLAIARMEALCAAVAADPRVTSGGFAD HHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC LPPPPAQPGAIRLPEPRPLRTLRRTAEQAVGHLAHEVRYVRSLAYVTANTSRWGKIAGGI CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHCCE LLAMA EEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA