Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487705

Identifier: 103487705

GI number: 103487705

Start: 2335816

End: 2336277

Strand: Direct

Name: 103487705

Synonym: Sala_2224

Alternate gene names: NA

Gene position: 2335816-2336277 (Clockwise)

Preceding gene: 103487702

Following gene: 103487712

Centisome position: 69.83

GC content: 64.5

Gene sequence:

>462_bases
ATGAAGGGTCGATGCGCTTGCGGGGGCGTGAGCTATGAACTGACGACGGCGCCGATGATCGTCCATTGCTGCCATTGTCG
CCACTGCCAGCGCGAGACGGGAAGCGCCTTTGTCGTCAACGCGATGATCGAGAGCGAGCGGCTGCACGTCGAAGGAACCG
TCGAGCTGGTGCTGACGCCATCCGAAAGCGGCCGCGGGCAGGAGATTGCCCGTTGCCCCGATTGCCGCATCGCGCTGTGG
AGCCATTATCCGAAAGCCGGGCGCCGATCGTCCTTCGTGCGCGTCGGCACACTCGACGAACCGGCCACCTGCCCGCCCGA
CGTCCATATCTTTACGCGCAGCAAACAGCCGTGGGTTCAATTGCCCGCGGGCACGCCCAATTTCGCCGACATCTACCCCT
CGCGGGAAGATGTCTGGAGCGCCGCGGCGATGGACCGGTGGCACGCGATGATGGCATCGTAA

Upstream 100 bases:

>100_bases
ATCAGGTCGAGCAGGCGAATGAGGGTCTGGGTTTCCATTATTTGCGGCGCTAACACTCGCCCCACAGTCGCACAATGGAC
GATGCACAAGGAGGTTGATG

Downstream 100 bases:

>100_bases
CGCGCCGCCGCTCTCCCGCACCGACCAGATGTGCGCCGGTCAGATGTGGATCGGCTTGCCTGTCACCGCCATCGCGGCTT
CCTTGATCGCCTCGCTGTGC

Product: glutathione-dependent formaldehyde-activating, GFA

Products: NA

Alternate protein names: Glutathione-Dependent Formaldehyde-Activating Family; Glutathione-Dependent Formaldehyde-Activating Protein; Lipoprotein

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MKGRCACGGVSYELTTAPMIVHCCHCRHCQRETGSAFVVNAMIESERLHVEGTVELVLTPSESGRGQEIARCPDCRIALW
SHYPKAGRRSSFVRVGTLDEPATCPPDVHIFTRSKQPWVQLPAGTPNFADIYPSREDVWSAAAMDRWHAMMAS

Sequences:

>Translated_153_residues
MKGRCACGGVSYELTTAPMIVHCCHCRHCQRETGSAFVVNAMIESERLHVEGTVELVLTPSESGRGQEIARCPDCRIALW
SHYPKAGRRSSFVRVGTLDEPATCPPDVHIFTRSKQPWVQLPAGTPNFADIYPSREDVWSAAAMDRWHAMMAS
>Mature_153_residues
MKGRCACGGVSYELTTAPMIVHCCHCRHCQRETGSAFVVNAMIESERLHVEGTVELVLTPSESGRGQEIARCPDCRIALW
SHYPKAGRRSSFVRVGTLDEPATCPPDVHIFTRSKQPWVQLPAGTPNFADIYPSREDVWSAAAMDRWHAMMAS

Specific function: Unknown

COG id: COG3791

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16975; Mature: 16975

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
9.8 %Cys+Met (Translated Protein)
5.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
9.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGRCACGGVSYELTTAPMIVHCCHCRHCQRETGSAFVVNAMIESERLHVEGTVELVLTP
CCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEEEEEEEC
SESGRGQEIARCPDCRIALWSHYPKAGRRSSFVRVGTLDEPATCPPDVHIFTRSKQPWVQ
CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCEEE
LPAGTPNFADIYPSREDVWSAAAMDRWHAMMAS
ECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKGRCACGGVSYELTTAPMIVHCCHCRHCQRETGSAFVVNAMIESERLHVEGTVELVLTP
CCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEEEEEEEC
SESGRGQEIARCPDCRIALWSHYPKAGRRSSFVRVGTLDEPATCPPDVHIFTRSKQPWVQ
CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCEEE
LPAGTPNFADIYPSREDVWSAAAMDRWHAMMAS
ECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA