| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487716
Identifier: 103487716
GI number: 103487716
Start: 2348065
End: 2349672
Strand: Direct
Name: 103487716
Synonym: Sala_2235
Alternate gene names: NA
Gene position: 2348065-2349672 (Clockwise)
Preceding gene: 103487712
Following gene: 103487717
Centisome position: 70.19
GC content: 69.96
Gene sequence:
>1608_bases ATGCGCCGGCAATTCGCGAAAGCCGCTGGCGGCGCGGCTGACGAGCCGCTAGGGGCGGCAACGATGAGCGACGACGCCGA CCATTCTGCCGTCACCAGCCGCAGCGTCGCGCGCGGGCTCGGCACGACGGTCCTCGCGCGCCTCGGCGCGGTGGTCGAGA TCGTCGCGCAGCCGCTCTATGTGCTGATGTTCGGGCTTGCGGGTTACGGCCTTTACGCCGTGCTGTGGGCGGCGGTGAAC CTCATCGAAAATATCTTCGACCTCGGCATGACCAGCGCGATGCAGCGCACCGTCCCGCAATCGGCAAGCGATGTCGAGGC GGCGGCGGCGCTGCGCACCGCGATGATCTTCGGCGTCGGCCCCTGCATCCTTGTCGCTGCGCTGATTACCCTGTTCGCCG CCGAGCTGGGGCCGCTTCTCAACGTCGCGGCAAAGGACCGCCCGCTCGTCATCCCGGCGATCCGGATTTTCGTCTGGGCG CTGCCGCTCTGGGCGTTCGTCGAAATCGCGACCTCGGCGCTGCGCGCGCGGATGGTGTTCGGCGCCGAAATCCGGCTGCG GATCGTGTGGGAGCAATTGCTGCGCCTCGTCTTCGCGGGCCTGTTCTTTGCGGGCGGCTTCGGCCTCAAGGGCCTGTTCA TCGCGCATCTCTGCTCGCTGGCGATCACCGCCGCGCTGTCGGTCCGCCTGCTTGCGCGGCAATATAGCTTTGCCGATCTT TGGCGCGGTCCGTGGGACGGTCAGACGTCGCGCGACACTTTCTGGGCGGGGCTGTCGATCCTTCCCTCGAATGTCATCAC GCGGCTGTTCGGCGACGCGCCCGCGCTGGTCCTCAACATGCTGCTCCCCGGCGCGGCGGGGGCCGCGGCGGCGGGCCTCT TCACCATTGCGCGCAAGCTGTCGAGCGTGGTGCAGCTTGTGCGCATCGCCTTCACCTATGTCATGGCGCCACTCGCCGCG AGCGCCGAGCGTCGCGACCGGCGACAGGTTGCCGACATCTATGCCTATGCGACGCGGCTGATCGCGGCGATCGCGCTGCC GCTCGCCGCCGTGCTCGCCGCCGGCAGCGCCTCGCTGCTCAGCCTGTTCGGCGATCAGGCGCAGGCGGCGCAGGCGGCGC TGGTCATCCTGCTTTTCGCGCGCGCGGTCGAGGCGGTGCTCGGCATCTCCGCGCCGGTGTTGCAGGTCGTCGCCGCCTTT CGCCACCAGCTCACCGCCAGCATCATCGGGGTTGCCGTCGCCGTCGCCGCCGGATGGCTGATGGTCGGCCATATCGATCC GCTGACCGGCGTGACGCTGGCGACGGCGATCGGGCTGGTCGTGATGGCCGCAATCCCGACGCTGCAACTCGCCGTGGTCG AGCGGCTCCATCCCTTCGATGCGCAATTCCCCGCGGTCGCGCTGCGCGGGATCGGCGTCACGATCGTCGCCGGGCTTGCC GCGATGCTCGCCGACCTGCTCCCCGACCCGGTCGCGCTGCCCTTGCTGCTCATCATCGCCGCGGCGGCGATCTGGCTGGC GCTGCGCTTTGCGCTGCCGCTCGCCGATCGCGCCTCGCTCGGCAAGACGGCGCGCCGCCTCCGCCTGATCGGACCCGCCG ACCGATGA
Upstream 100 bases:
>100_bases GGCGGCTGTTCTTGGGCAGGCGGAATTCGGCCATGTCGGGCTCCCATGATGCAGTCGCGGGTCCGACTAGACCCGATTGG CGGCGGCGACAAGGGGGGTG
Downstream 100 bases:
>100_bases CCGACACCCCGCCCCGCGTCGCCGTCTATGACCTCGACCGCACCGTGCTGCGCACCCCGACCTTCACGCTGTTCCTGCTG TGGGCGGCGTGGCGCGACGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 535; Mature: 535
Protein sequence:
>535_residues MRRQFAKAAGGAADEPLGAATMSDDADHSAVTSRSVARGLGTTVLARLGAVVEIVAQPLYVLMFGLAGYGLYAVLWAAVN LIENIFDLGMTSAMQRTVPQSASDVEAAAALRTAMIFGVGPCILVAALITLFAAELGPLLNVAAKDRPLVIPAIRIFVWA LPLWAFVEIATSALRARMVFGAEIRLRIVWEQLLRLVFAGLFFAGGFGLKGLFIAHLCSLAITAALSVRLLARQYSFADL WRGPWDGQTSRDTFWAGLSILPSNVITRLFGDAPALVLNMLLPGAAGAAAAGLFTIARKLSSVVQLVRIAFTYVMAPLAA SAERRDRRQVADIYAYATRLIAAIALPLAAVLAAGSASLLSLFGDQAQAAQAALVILLFARAVEAVLGISAPVLQVVAAF RHQLTASIIGVAVAVAAGWLMVGHIDPLTGVTLATAIGLVVMAAIPTLQLAVVERLHPFDAQFPAVALRGIGVTIVAGLA AMLADLLPDPVALPLLLIIAAAAIWLALRFALPLADRASLGKTARRLRLIGPADR
Sequences:
>Translated_535_residues MRRQFAKAAGGAADEPLGAATMSDDADHSAVTSRSVARGLGTTVLARLGAVVEIVAQPLYVLMFGLAGYGLYAVLWAAVN LIENIFDLGMTSAMQRTVPQSASDVEAAAALRTAMIFGVGPCILVAALITLFAAELGPLLNVAAKDRPLVIPAIRIFVWA LPLWAFVEIATSALRARMVFGAEIRLRIVWEQLLRLVFAGLFFAGGFGLKGLFIAHLCSLAITAALSVRLLARQYSFADL WRGPWDGQTSRDTFWAGLSILPSNVITRLFGDAPALVLNMLLPGAAGAAAAGLFTIARKLSSVVQLVRIAFTYVMAPLAA SAERRDRRQVADIYAYATRLIAAIALPLAAVLAAGSASLLSLFGDQAQAAQAALVILLFARAVEAVLGISAPVLQVVAAF RHQLTASIIGVAVAVAAGWLMVGHIDPLTGVTLATAIGLVVMAAIPTLQLAVVERLHPFDAQFPAVALRGIGVTIVAGLA AMLADLLPDPVALPLLLIIAAAAIWLALRFALPLADRASLGKTARRLRLIGPADR >Mature_535_residues MRRQFAKAAGGAADEPLGAATMSDDADHSAVTSRSVARGLGTTVLARLGAVVEIVAQPLYVLMFGLAGYGLYAVLWAAVN LIENIFDLGMTSAMQRTVPQSASDVEAAAALRTAMIFGVGPCILVAALITLFAAELGPLLNVAAKDRPLVIPAIRIFVWA LPLWAFVEIATSALRARMVFGAEIRLRIVWEQLLRLVFAGLFFAGGFGLKGLFIAHLCSLAITAALSVRLLARQYSFADL WRGPWDGQTSRDTFWAGLSILPSNVITRLFGDAPALVLNMLLPGAAGAAAAGLFTIARKLSSVVQLVRIAFTYVMAPLAA SAERRDRRQVADIYAYATRLIAAIALPLAAVLAAGSASLLSLFGDQAQAAQAALVILLFARAVEAVLGISAPVLQVVAAF RHQLTASIIGVAVAVAAGWLMVGHIDPLTGVTLATAIGLVVMAAIPTLQLAVVERLHPFDAQFPAVALRGIGVTIVAGLA AMLADLLPDPVALPLLLIIAAAAIWLALRFALPLADRASLGKTARRLRLIGPADR
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56029; Mature: 56029
Theoretical pI: Translated: 10.50; Mature: 10.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRQFAKAAGGAADEPLGAATMSDDADHSAVTSRSVARGLGTTVLARLGAVVEIVAQPLY CCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLMFGLAGYGLYAVLWAAVNLIENIFDLGMTSAMQRTVPQSASDVEAAAALRTAMIFGVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC PCILVAALITLFAAELGPLLNVAAKDRPLVIPAIRIFVWALPLWAFVEIATSALRARMVF HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAEIRLRIVWEQLLRLVFAGLFFAGGFGLKGLFIAHLCSLAITAALSVRLLARQYSFADL HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WRGPWDGQTSRDTFWAGLSILPSNVITRLFGDAPALVLNMLLPGAAGAAAAGLFTIARKL HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH SSVVQLVRIAFTYVMAPLAASAERRDRRQVADIYAYATRLIAAIALPLAAVLAAGSASLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH SLFGDQAQAAQAALVILLFARAVEAVLGISAPVLQVVAAFRHQLTASIIGVAVAVAAGWL HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MVGHIDPLTGVTLATAIGLVVMAAIPTLQLAVVERLHPFDAQFPAVALRGIGVTIVAGLA HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH AMLADLLPDPVALPLLLIIAAAAIWLALRFALPLADRASLGKTARRLRLIGPADR HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MRRQFAKAAGGAADEPLGAATMSDDADHSAVTSRSVARGLGTTVLARLGAVVEIVAQPLY CCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLMFGLAGYGLYAVLWAAVNLIENIFDLGMTSAMQRTVPQSASDVEAAAALRTAMIFGVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC PCILVAALITLFAAELGPLLNVAAKDRPLVIPAIRIFVWALPLWAFVEIATSALRARMVF HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAEIRLRIVWEQLLRLVFAGLFFAGGFGLKGLFIAHLCSLAITAALSVRLLARQYSFADL HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WRGPWDGQTSRDTFWAGLSILPSNVITRLFGDAPALVLNMLLPGAAGAAAAGLFTIARKL HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH SSVVQLVRIAFTYVMAPLAASAERRDRRQVADIYAYATRLIAAIALPLAAVLAAGSASLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH SLFGDQAQAAQAALVILLFARAVEAVLGISAPVLQVVAAFRHQLTASIIGVAVAVAAGWL HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MVGHIDPLTGVTLATAIGLVVMAAIPTLQLAVVERLHPFDAQFPAVALRGIGVTIVAGLA HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH AMLADLLPDPVALPLLLIIAAAAIWLALRFALPLADRASLGKTARRLRLIGPADR HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA