| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487681
Identifier: 103487681
GI number: 103487681
Start: 2312125
End: 2312799
Strand: Direct
Name: 103487681
Synonym: Sala_2200
Alternate gene names: NA
Gene position: 2312125-2312799 (Clockwise)
Preceding gene: 103487679
Following gene: 103487682
Centisome position: 69.12
GC content: 69.63
Gene sequence:
>675_bases ATGAAAGCGCATGCAACGGTCCCTTACAGCGCGCTGCCGACGATGACCGACGCCGCGCGGATCGCGGCGGCGGAGGCGTT TCGCGACCATGTCGCCACGCGGCGAACGTGCCGGATGTTCAGCGACACACCGGTGCCGCGCGCGGTGATCGAGGCCGCGA TCGCCGCGGCGGGGACCGCGCCCAGCGGCGCCAATCACCAGCCGTGGCACTTCGCCGTTGTCTCCTCGCCCGACATCAAG CACCGCATCCGCCTCGCCGCCGAGGCCGAGGAGCGCGCATTTTACGCCAGCCGCGCCGGACAGGAATGGCTAGAGGCGCT CGCGCCGCTCGGCACCGACGAGGACAAGGGCTTCCTCGACATCGCGCCCTGGCTGATCGTCGTTTTCGGACAACGGCGCG GCGGGATCGAGCCCGGCGAATCGCGACAGAATTATTATGTCACCGAAAGCGTCGGCATCGCCTGCGGCCTGTTGCTCACC GCGCTCCACGGCGCCGGGCTCGCGACCTTGACGCACACGCCGTCGCCGATGGGCTTCCTGCGCGACATCTGTGGCCGCCC GGCCGATGAAAAGCCGCTGATGCTGGTCGTCGCGGGCCACCCGGCGCCCGACGCCACGGTGCCCGTTCACGCGACGCGCA AAAAACCGCTGGACCGGATCAGCAGCTGGCTCTGA
Upstream 100 bases:
>100_bases CGACGAATCCTTGCATCGTCCAGTTAGCATTACTGACATAAATGTCAATAGTTGGCAAACAACGCTGGCGCGATCATCCG ATCGCCGATAGACCGGCGCC
Downstream 100 bases:
>100_bases CGCTGCGCGGCACTTGGAGGAAAAGGCGATGAACCGGGGAACCACGACGCGCTACGAAAGCCTCGACGCGATCCGCGGGG TCGCGGTGATGGGCATCCTT
Product: nitroreductase
Products: NA
Alternate protein names: Nitroreductase Family Protein; Oxidoreductase
Number of amino acids: Translated: 224; Mature: 224
Protein sequence:
>224_residues MKAHATVPYSALPTMTDAARIAAAEAFRDHVATRRTCRMFSDTPVPRAVIEAAIAAAGTAPSGANHQPWHFAVVSSPDIK HRIRLAAEAEERAFYASRAGQEWLEALAPLGTDEDKGFLDIAPWLIVVFGQRRGGIEPGESRQNYYVTESVGIACGLLLT ALHGAGLATLTHTPSPMGFLRDICGRPADEKPLMLVVAGHPAPDATVPVHATRKKPLDRISSWL
Sequences:
>Translated_224_residues MKAHATVPYSALPTMTDAARIAAAEAFRDHVATRRTCRMFSDTPVPRAVIEAAIAAAGTAPSGANHQPWHFAVVSSPDIK HRIRLAAEAEERAFYASRAGQEWLEALAPLGTDEDKGFLDIAPWLIVVFGQRRGGIEPGESRQNYYVTESVGIACGLLLT ALHGAGLATLTHTPSPMGFLRDICGRPADEKPLMLVVAGHPAPDATVPVHATRKKPLDRISSWL >Mature_224_residues MKAHATVPYSALPTMTDAARIAAAEAFRDHVATRRTCRMFSDTPVPRAVIEAAIAAAGTAPSGANHQPWHFAVVSSPDIK HRIRLAAEAEERAFYASRAGQEWLEALAPLGTDEDKGFLDIAPWLIVVFGQRRGGIEPGESRQNYYVTESVGIACGLLLT ALHGAGLATLTHTPSPMGFLRDICGRPADEKPLMLVVAGHPAPDATVPVHATRKKPLDRISSWL
Specific function: Unknown
COG id: COG0778
COG function: function code C; Nitroreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI42794271, Length=201, Percent_Identity=45.771144278607, Blast_Score=166, Evalue=2e-41, Organism=Homo sapiens, GI257743489, Length=150, Percent_Identity=42.6666666666667, Blast_Score=120, Evalue=1e-27, Organism=Homo sapiens, GI257743486, Length=169, Percent_Identity=39.6449704142012, Blast_Score=120, Evalue=1e-27, Organism=Caenorhabditis elegans, GI71980980, Length=217, Percent_Identity=34.1013824884793, Blast_Score=126, Evalue=1e-29, Organism=Drosophila melanogaster, GI281366032, Length=178, Percent_Identity=45.5056179775281, Blast_Score=142, Evalue=2e-34, Organism=Drosophila melanogaster, GI24662475, Length=178, Percent_Identity=45.5056179775281, Blast_Score=138, Evalue=2e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24061; Mature: 24061
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAHATVPYSALPTMTDAARIAAAEAFRDHVATRRTCRMFSDTPVPRAVIEAAIAAAGTA CCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC PSGANHQPWHFAVVSSPDIKHRIRLAAEAEERAFYASRAGQEWLEALAPLGTDEDKGFLD CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEH IAPWLIVVFGQRRGGIEPGESRQNYYVTESVGIACGLLLTALHGAGLATLTHTPSPMGFL HHHHHHHEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH RDICGRPADEKPLMLVVAGHPAPDATVPVHATRKKPLDRISSWL HHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHCCHHHHHHHCC >Mature Secondary Structure MKAHATVPYSALPTMTDAARIAAAEAFRDHVATRRTCRMFSDTPVPRAVIEAAIAAAGTA CCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC PSGANHQPWHFAVVSSPDIKHRIRLAAEAEERAFYASRAGQEWLEALAPLGTDEDKGFLD CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEH IAPWLIVVFGQRRGGIEPGESRQNYYVTESVGIACGLLLTALHGAGLATLTHTPSPMGFL HHHHHHHEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH RDICGRPADEKPLMLVVAGHPAPDATVPVHATRKKPLDRISSWL HHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA