| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yecE [C]
Identifier: 103487679
GI number: 103487679
Start: 2310443
End: 2311189
Strand: Direct
Name: yecE [C]
Synonym: Sala_2198
Alternate gene names: 103487679
Gene position: 2310443-2311189 (Clockwise)
Preceding gene: 103487678
Following gene: 103487681
Centisome position: 69.07
GC content: 64.52
Gene sequence:
>747_bases ATGAGCATCCACATCGGTATCGGCGGCTGGACCTATGAACCGTGGCGCGGCACTTTCTATCCGCCGAAGCATCCGCAAAA GCGCGAGCTCGAATATGCCGGCCAGCATCTGACCGGCATCGAAATCAACGGCACCTATTATGGCAGCCAGAAACCCGAAA GCTTTGCGAACTGGGCCGCGTCGGTCCCCGACGGCTTCAGGTTCAGCGTCAAGGCGTCACGTTTCTGCACCAACCGCAAG GTGCTGAAGGACGGCGCCGCCTCGATCGGGAAGTTTCTCGGTCAAGGGCTGACGCAGCTCGGCGACCGGCTCGGCCCGAT CCACTGGCAGTTCATGGCGACCAAACAGTTCGACCGTGACGATTTTGCGGGTTTCCTCGACCTGCTGCCCGACAGCCAGG ATGGCCTTCCCCTGCGCCACGCGATCGAGGTGCGGCATGAAAGTTTCCGCGATCCGGCGTTCATCGACCTGCTGCGCGCG CGCAACATGGCGGTCGTCTACGCCGACAGCGACGAGTTTCCGTGCATCGACGAACAGACCGCCGATTTCACTTACGCGCG CCTCCAGCGCAGCCGCGAGGAGGTGGAAACCGGCTATGACGCGGCGGCTCTCGACCAATGGGCAAAGCGGGTGCGCGACT GGGCCGCGGGCGACCGCGACGTCTTCCTCTTCTTCATCGCCGGAGCCAAGGTCCGCAACCCGGCGGCGGCGCAGGCGCTG ATCGCGCGGCTGCGCGACAGCGGCTGA
Upstream 100 bases:
>100_bases CATTCCGGCGAAGGCCGGAATCTCGCCGGTGCGGCATAACGCGACGATGAGATCCCGGCCTCCGCCGGGATGACGATATA AGGAGGGAGATGGCGGAATC
Downstream 100 bases:
>100_bases CGGGTCAGGCCGCCTGCGCGAGCGGCACGGGCGCCGCCGCGGCTTCGGCCGCCTTTTTCCCCAAGAGGTCATAGGGGTCG ATGCCGTCGGCGCGCATCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 248; Mature: 247
Protein sequence:
>248_residues MSIHIGIGGWTYEPWRGTFYPPKHPQKRELEYAGQHLTGIEINGTYYGSQKPESFANWAASVPDGFRFSVKASRFCTNRK VLKDGAASIGKFLGQGLTQLGDRLGPIHWQFMATKQFDRDDFAGFLDLLPDSQDGLPLRHAIEVRHESFRDPAFIDLLRA RNMAVVYADSDEFPCIDEQTADFTYARLQRSREEVETGYDAAALDQWAKRVRDWAAGDRDVFLFFIAGAKVRNPAAAQAL IARLRDSG
Sequences:
>Translated_248_residues MSIHIGIGGWTYEPWRGTFYPPKHPQKRELEYAGQHLTGIEINGTYYGSQKPESFANWAASVPDGFRFSVKASRFCTNRK VLKDGAASIGKFLGQGLTQLGDRLGPIHWQFMATKQFDRDDFAGFLDLLPDSQDGLPLRHAIEVRHESFRDPAFIDLLRA RNMAVVYADSDEFPCIDEQTADFTYARLQRSREEVETGYDAAALDQWAKRVRDWAAGDRDVFLFFIAGAKVRNPAAAQAL IARLRDSG >Mature_247_residues SIHIGIGGWTYEPWRGTFYPPKHPQKRELEYAGQHLTGIEINGTYYGSQKPESFANWAASVPDGFRFSVKASRFCTNRKV LKDGAASIGKFLGQGLTQLGDRLGPIHWQFMATKQFDRDDFAGFLDLLPDSQDGLPLRHAIEVRHESFRDPAFIDLLRAR NMAVVYADSDEFPCIDEQTADFTYARLQRSREEVETGYDAAALDQWAKRVRDWAAGDRDVFLFFIAGAKVRNPAAAQALI ARLRDSG
Specific function: Unknown
COG id: COG1801
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27982; Mature: 27850
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIHIGIGGWTYEPWRGTFYPPKHPQKRELEYAGQHLTGIEINGTYYGSQKPESFANWAA CEEEEECCCEECCCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECEECCCCCCHHHHHHHH SVPDGFRFSVKASRFCTNRKVLKDGAASIGKFLGQGLTQLGDRLGPIHWQFMATKQFDRD CCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH DFAGFLDLLPDSQDGLPLRHAIEVRHESFRDPAFIDLLRARNMAVVYADSDEFPCIDEQT HHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCC ADFTYARLQRSREEVETGYDAAALDQWAKRVRDWAAGDRDVFLFFIAGAKVRNPAAAQAL CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHH IARLRDSG HHHHHCCC >Mature Secondary Structure SIHIGIGGWTYEPWRGTFYPPKHPQKRELEYAGQHLTGIEINGTYYGSQKPESFANWAA EEEEECCCEECCCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECEECCCCCCHHHHHHHH SVPDGFRFSVKASRFCTNRKVLKDGAASIGKFLGQGLTQLGDRLGPIHWQFMATKQFDRD CCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH DFAGFLDLLPDSQDGLPLRHAIEVRHESFRDPAFIDLLRARNMAVVYADSDEFPCIDEQT HHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCC ADFTYARLQRSREEVETGYDAAALDQWAKRVRDWAAGDRDVFLFFIAGAKVRNPAAAQAL CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHH IARLRDSG HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA