| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yeiB [H]
Identifier: 103487682
GI number: 103487682
Start: 2312828
End: 2314078
Strand: Direct
Name: yeiB [H]
Synonym: Sala_2201
Alternate gene names: 103487682
Gene position: 2312828-2314078 (Clockwise)
Preceding gene: 103487681
Following gene: 103487688
Centisome position: 69.14
GC content: 63.55
Gene sequence:
>1251_bases ATGAACCGGGGAACCACGACGCGCTACGAAAGCCTCGACGCGATCCGCGGGGTCGCGGTGATGGGCATCCTTGCGATGAA CATCGTCGCCTTTGCCCTGCCCTTCCCCGCCTATGGCAACCCCGCCGCGGGCGGACCGCCCACCGACAGCGACGTCGCGA CATGGTTCTTCAACTTCGTTTTCGTGGATTCGAAGATGCGCGGCATGTTTTCGATGCTGTTCGGGGCGAGCACCCTGCTG GTGATCGAAAGCGCCGCCGTCGCGGGACGCAGCGGCGCGGGCGCGCATTATTCGCGCATGTTCTGGCTCGCGATCTTCGG CCTCGCGCATTTCTATCTCATCTGGTTCGGCGACATATTGTTCCTTTATGCAATCTGCGGGCTGCTCATCTTCCTGTTCC GCAACCTGTCGGTGCGTGCGCTCCTGCTCTGGGCGATCCCCTTTTTCCTCATCGCTATCGGTCTGCACACGAGCCTCTGG GCGATGATGTCGATGGCACAGGCGGGAACGCTGCCGCCCGAAGCGGCCACCGCGATGCAGGAGGCGCTGCGGCAGATGAA CGCCGATATGGGCCCGTCCACCCCCGTCTATGCCGAAGAGAAGGCGCTCTATCTCGGCAGCTATGCCAGCATCGTCGCAT ATCGCACCGGCGCGATGGCGGGCGATCCGCTCTTCTTCCTCGGCCTGTTCCTGTGGGAAACGGTGGGGCTGATGCTGATC GGCATGGCGCTGTTCAAATCGCATATGCTGACCGGCGAATGGGAGGCGGCGCGCTATCGCAAATGGGCGATCGCCTGTTT TGCGATCGCCGTGCCGCCGCTCGTCGGGCTCGCCCTCTATCAGATGCGAACGGGTTATGACGCGGTATCGGTCTTCGGTT CGACGATCGCGCTGTCGGTGCCCTTCGACACGCTGATGACGATCGGCTGGGCGGCGCTCATCATGCTGCTGGTCAAGACA GCGGCCAGCCACGCCCTGCGCGCGCGGCTCGCGGCGGCGGGGCGCATGGCCTTCACCAATTATCTCGTCACCTCGATCGT GATGACGACGATATTTTACGGCTATGGGCTCGGCCTCTTCGGCAGCATCGGCCGCCTGCCGCTCTATCTTTTCTGCATCG GCATGTGGGCGGCGATGCTGCTGTGGTCAAAGCCCTGGCTCGACCGTTTTCAATATGGCCCGCTCGAGTGGCTGTGGCGC AGCCTGTCGCGCGGGCAGGTGCAGCCGATGCGAAAACGCTTGCCGGGCTGA
Upstream 100 bases:
>100_bases GCGCCCGACGCCACGGTGCCCGTTCACGCGACGCGCAAAAAACCGCTGGACCGGATCAGCAGCTGGCTCTGACGCTGCGC GGCACTTGGAGGAAAAGGCG
Downstream 100 bases:
>100_bases AACGGCGCGTCGGTCAGTAACCGACGGCGCGACCGAAAGTGGCGGGGCGGCGCTGGACCAGCGGATTGGCCTCGCGCTCC AGCGCGGCGAGCGTTTGTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 416; Mature: 416
Protein sequence:
>416_residues MNRGTTTRYESLDAIRGVAVMGILAMNIVAFALPFPAYGNPAAGGPPTDSDVATWFFNFVFVDSKMRGMFSMLFGASTLL VIESAAVAGRSGAGAHYSRMFWLAIFGLAHFYLIWFGDILFLYAICGLLIFLFRNLSVRALLLWAIPFFLIAIGLHTSLW AMMSMAQAGTLPPEAATAMQEALRQMNADMGPSTPVYAEEKALYLGSYASIVAYRTGAMAGDPLFFLGLFLWETVGLMLI GMALFKSHMLTGEWEAARYRKWAIACFAIAVPPLVGLALYQMRTGYDAVSVFGSTIALSVPFDTLMTIGWAALIMLLVKT AASHALRARLAAAGRMAFTNYLVTSIVMTTIFYGYGLGLFGSIGRLPLYLFCIGMWAAMLLWSKPWLDRFQYGPLEWLWR SLSRGQVQPMRKRLPG
Sequences:
>Translated_416_residues MNRGTTTRYESLDAIRGVAVMGILAMNIVAFALPFPAYGNPAAGGPPTDSDVATWFFNFVFVDSKMRGMFSMLFGASTLL VIESAAVAGRSGAGAHYSRMFWLAIFGLAHFYLIWFGDILFLYAICGLLIFLFRNLSVRALLLWAIPFFLIAIGLHTSLW AMMSMAQAGTLPPEAATAMQEALRQMNADMGPSTPVYAEEKALYLGSYASIVAYRTGAMAGDPLFFLGLFLWETVGLMLI GMALFKSHMLTGEWEAARYRKWAIACFAIAVPPLVGLALYQMRTGYDAVSVFGSTIALSVPFDTLMTIGWAALIMLLVKT AASHALRARLAAAGRMAFTNYLVTSIVMTTIFYGYGLGLFGSIGRLPLYLFCIGMWAAMLLWSKPWLDRFQYGPLEWLWR SLSRGQVQPMRKRLPG >Mature_416_residues MNRGTTTRYESLDAIRGVAVMGILAMNIVAFALPFPAYGNPAAGGPPTDSDVATWFFNFVFVDSKMRGMFSMLFGASTLL VIESAAVAGRSGAGAHYSRMFWLAIFGLAHFYLIWFGDILFLYAICGLLIFLFRNLSVRALLLWAIPFFLIAIGLHTSLW AMMSMAQAGTLPPEAATAMQEALRQMNADMGPSTPVYAEEKALYLGSYASIVAYRTGAMAGDPLFFLGLFLWETVGLMLI GMALFKSHMLTGEWEAARYRKWAIACFAIAVPPLVGLALYQMRTGYDAVSVFGSTIALSVPFDTLMTIGWAALIMLLVKT AASHALRARLAAAGRMAFTNYLVTSIVMTTIFYGYGLGLFGSIGRLPLYLFCIGMWAAMLLWSKPWLDRFQYGPLEWLWR SLSRGQVQPMRKRLPG
Specific function: Involved in transport (Potential) [H]
COG id: COG2311
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis yxaH and yrkO [H]
Homologues:
Organism=Escherichia coli, GI1788475, Length=403, Percent_Identity=32.7543424317618, Blast_Score=145, Evalue=5e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007349 [H]
Pfam domain/function: PF04235 DUF418 [H]
EC number: NA
Molecular weight: Translated: 45814; Mature: 45814
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: PS01353 HEMATOPO_REC_L_F2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 6.0 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 6.0 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRGTTTRYESLDAIRGVAVMGILAMNIVAFALPFPAYGNPAAGGPPTDSDVATWFFNFV CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH FVDSKMRGMFSMLFGASTLLVIESAAVAGRSGAGAHYSRMFWLAIFGLAHFYLIWFGDIL HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FLYAICGLLIFLFRNLSVRALLLWAIPFFLIAIGLHTSLWAMMSMAQAGTLPPEAATAMQ HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH EALRQMNADMGPSTPVYAEEKALYLGSYASIVAYRTGAMAGDPLFFLGLFLWETVGLMLI HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH GMALFKSHMLTGEWEAARYRKWAIACFAIAVPPLVGLALYQMRTGYDAVSVFGSTIALSV HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHEEEC PFDTLMTIGWAALIMLLVKTAASHALRARLAAAGRMAFTNYLVTSIVMTTIFYGYGLGLF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GSIGRLPLYLFCIGMWAAMLLWSKPWLDRFQYGPLEWLWRSLSRGQVQPMRKRLPG HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHCCCCCCHHHHCCCC >Mature Secondary Structure MNRGTTTRYESLDAIRGVAVMGILAMNIVAFALPFPAYGNPAAGGPPTDSDVATWFFNFV CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH FVDSKMRGMFSMLFGASTLLVIESAAVAGRSGAGAHYSRMFWLAIFGLAHFYLIWFGDIL HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FLYAICGLLIFLFRNLSVRALLLWAIPFFLIAIGLHTSLWAMMSMAQAGTLPPEAATAMQ HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH EALRQMNADMGPSTPVYAEEKALYLGSYASIVAYRTGAMAGDPLFFLGLFLWETVGLMLI HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH GMALFKSHMLTGEWEAARYRKWAIACFAIAVPPLVGLALYQMRTGYDAVSVFGSTIALSV HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHEEEC PFDTLMTIGWAALIMLLVKTAASHALRARLAAAGRMAFTNYLVTSIVMTTIFYGYGLGLF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GSIGRLPLYLFCIGMWAAMLLWSKPWLDRFQYGPLEWLWRSLSRGQVQPMRKRLPG HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHCCCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503; 1619663 [H]