| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487631
Identifier: 103487631
GI number: 103487631
Start: 2260412
End: 2261452
Strand: Reverse
Name: 103487631
Synonym: Sala_2150
Alternate gene names: NA
Gene position: 2261452-2260412 (Counterclockwise)
Preceding gene: 103487632
Following gene: 103487627
Centisome position: 67.6
GC content: 57.93
Gene sequence:
>1041_bases GTGGCACGTCGGCGAAGCGGACGGATCGGGAACGGCGGTTCCGTCGCGGAACCGGCTTTCTGCTTATGGGTGATTCATGC GATCCAGCCTACGTGCCATTCCGCCCGAAATTCTCGTCACCGGCGCCGCGCTCGCGGTGATGTGGCTTTTTTGATCGCAT TGGACCTCCCCATCGTCCTGCCGTCGGGTAATCGTGCCGCCTTTGTCGGGGTGCACTATATCTATCCGCTGATCGGCGTG GCGCTACTCGGTCTTGCAACATTTGCGGCAGGCAAGCGCGAGGTTTCAACCAGCTTTTTGGTCGCTCTGCCCTGCTATGT CATGGTCCTGATTGCGCACTTCAACATCAAGCTTTGGATACCGCACATCAATCCAGTGATGTACGATGATTTCTACTGGA AGACGGACCAGATGGTCCGTCCGTTGATCGACGCGTGCATCCATATGCGCGAGAATCTGTTCGGATTCATCCGCTTTGAA TCCAACTTCTACATGCTGTCGTTCATTGGCCTGTTTTATACCAGTTTCCTTTATCACGCGATCAGGACGCCGACACATTT CAGGACGCTGGTCGTGGCGGTTCTGCTCATGCAATCGCTTGGTGCGCTGTCCTATCTGGTTGCACCGGCGATAGGCCCGT TCATCTATGAAGCGGGGATCGATCCCACGATTACGCCGGGTCAGCTCAGCATGCTCGAATTCTATCGTCAGTCGGTGTCG CAAGGGTCGGCGTGGATCGCGCAACACGGCAGCACCCACTTTACCGTCGGACTGGCGGCGATGCCGTCGCTGCACGCGGC GGGAGCATTTCTTTTCTGGCTCTTTGCGTGGAAACACGGCCGGATCCTGTTGCCGCTCTATTCGATCCTCCTGTTCTTCA TCCTCGTCACGTCGATTGCCAGTCGTTGGCATTATGCCATCGACATTCCGGTCGGAATCGCACTCGCCTGGGGATGCGTC TGGCTGGCAGAGCGTTTCGTTCGCACCGCGAACGACGGGCAGGCGGTCCCGGCGATCACGACCGTGCCAGCGACGACCTG A
Upstream 100 bases:
>100_bases GCATTGTACGAATTTGAAGAGGTCGGCGATAGGCTTCTGGCCAGATAGCACCCCGCGCCCCGGTTGGGGTGGGCGGATTT ATCCCTTCATTAACCTTGTT
Downstream 100 bases:
>100_bases CTGGAATAGCCCAACTATGGCCGACTGTGGCGCATTTACGTGCCCAGGTCGACCTGATGGGCGAGCGCCCATTGCTCATA CTGCCCGCGCGGGTCCGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 346; Mature: 345
Protein sequence:
>346_residues MARRRSGRIGNGGSVAEPAFCLWVIHAIQPTCHSARNSRHRRRARGDVAFLIALDLPIVLPSGNRAAFVGVHYIYPLIGV ALLGLATFAAGKREVSTSFLVALPCYVMVLIAHFNIKLWIPHINPVMYDDFYWKTDQMVRPLIDACIHMRENLFGFIRFE SNFYMLSFIGLFYTSFLYHAIRTPTHFRTLVVAVLLMQSLGALSYLVAPAIGPFIYEAGIDPTITPGQLSMLEFYRQSVS QGSAWIAQHGSTHFTVGLAAMPSLHAAGAFLFWLFAWKHGRILLPLYSILLFFILVTSIASRWHYAIDIPVGIALAWGCV WLAERFVRTANDGQAVPAITTVPATT
Sequences:
>Translated_346_residues MARRRSGRIGNGGSVAEPAFCLWVIHAIQPTCHSARNSRHRRRARGDVAFLIALDLPIVLPSGNRAAFVGVHYIYPLIGV ALLGLATFAAGKREVSTSFLVALPCYVMVLIAHFNIKLWIPHINPVMYDDFYWKTDQMVRPLIDACIHMRENLFGFIRFE SNFYMLSFIGLFYTSFLYHAIRTPTHFRTLVVAVLLMQSLGALSYLVAPAIGPFIYEAGIDPTITPGQLSMLEFYRQSVS QGSAWIAQHGSTHFTVGLAAMPSLHAAGAFLFWLFAWKHGRILLPLYSILLFFILVTSIASRWHYAIDIPVGIALAWGCV WLAERFVRTANDGQAVPAITTVPATT >Mature_345_residues ARRRSGRIGNGGSVAEPAFCLWVIHAIQPTCHSARNSRHRRRARGDVAFLIALDLPIVLPSGNRAAFVGVHYIYPLIGVA LLGLATFAAGKREVSTSFLVALPCYVMVLIAHFNIKLWIPHINPVMYDDFYWKTDQMVRPLIDACIHMRENLFGFIRFES NFYMLSFIGLFYTSFLYHAIRTPTHFRTLVVAVLLMQSLGALSYLVAPAIGPFIYEAGIDPTITPGQLSMLEFYRQSVSQ GSAWIAQHGSTHFTVGLAAMPSLHAAGAFLFWLFAWKHGRILLPLYSILLFFILVTSIASRWHYAIDIPVGIALAWGCVW LAERFVRTANDGQAVPAITTVPATT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38557; Mature: 38426
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARRRSGRIGNGGSVAEPAFCLWVIHAIQPTCHSARNSRHRRRARGDVAFLIALDLPIVL CCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEEECCEEEE PSGNRAAFVGVHYIYPLIGVALLGLATFAAGKREVSTSFLVALPCYVMVLIAHFNIKLWI CCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEE PHINPVMYDDFYWKTDQMVRPLIDACIHMRENLFGFIRFESNFYMLSFIGLFYTSFLYHA CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHH IRTPTHFRTLVVAVLLMQSLGALSYLVAPAIGPFIYEAGIDPTITPGQLSMLEFYRQSVS HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH QGSAWIAQHGSTHFTVGLAAMPSLHAAGAFLFWLFAWKHGRILLPLYSILLFFILVTSIA CCCHHHHHCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH SRWHYAIDIPVGIALAWGCVWLAERFVRTANDGQAVPAITTVPATT HCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCC >Mature Secondary Structure ARRRSGRIGNGGSVAEPAFCLWVIHAIQPTCHSARNSRHRRRARGDVAFLIALDLPIVL CCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEEECCEEEE PSGNRAAFVGVHYIYPLIGVALLGLATFAAGKREVSTSFLVALPCYVMVLIAHFNIKLWI CCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEE PHINPVMYDDFYWKTDQMVRPLIDACIHMRENLFGFIRFESNFYMLSFIGLFYTSFLYHA CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHH IRTPTHFRTLVVAVLLMQSLGALSYLVAPAIGPFIYEAGIDPTITPGQLSMLEFYRQSVS HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH QGSAWIAQHGSTHFTVGLAAMPSLHAAGAFLFWLFAWKHGRILLPLYSILLFFILVTSIA CCCHHHHHCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH SRWHYAIDIPVGIALAWGCVWLAERFVRTANDGQAVPAITTVPATT HCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA