| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487632
Identifier: 103487632
GI number: 103487632
Start: 2261505
End: 2263064
Strand: Reverse
Name: 103487632
Synonym: Sala_2151
Alternate gene names: NA
Gene position: 2263064-2261505 (Counterclockwise)
Preceding gene: 103487633
Following gene: 103487631
Centisome position: 67.65
GC content: 60.9
Gene sequence:
>1560_bases ATGGGCGCTTTGACCGCCAGCGTCGGCCGATACCCGGTCGCCGGGATATGTATCACACTGATCGCGATCATGACTTTCTG GAGCGGCAACCAGCTCCGTTTGGGGTTTGAAAGCGTCTGGCCCACGATGGTCGGCGCTATTGTCATCGCCGCAATCGTCA CTGCATTTTTCCGGGCGATTTGCGGCGACTGGGCACGTGCCGGTATGGCTTGCGGCATAACGGCAGTCTATTTTTTCTAT GTTCCAAGGTTGCTGGCGCTGCTGCCGCTGCCGTTTCCGATGGCCGCCGCCCTGCACCTCGCGGCGATTGCCGCGCTTGT CGCGCTTTACCGGACGTTCCCGTCGGACGGGACCAGGCTCAGGGACGTTGCCGGTCGCCTTAACCTTCTTGCCGCCCTGT TGGTTGTCGTCAATGCCGTGCCGCTGGCCGTGCAGCAGTTTCGGCTTGAATCCGCGCGCGCACCGGCGCAGCGAAGCTTA AGCGAACTCGACGGCAAAGCGATGCCTGACGGTCCCGACGTCTGGCACATTCTTTTCGATCGCTATGCCGCGAACGACAC GTTCAAGGCGCATTACGGGTTCGATAACCAGCCGTTCATCGATGCGCTTCGACAGCGCGGATTTGTCGTTCCCGATCGGG CTTATGCAAATTATCAGCGGACCAGCCATTCGATTGCATCGACGATGAACGGCACGCTCCTTGATCCGATGGCGCGCAAG ATGTCCGGCGGCGATCAGGGCGACTGGGTTCCCATCTATCGGGCCGCGCGCAACGGGTCGGCTATCCGCCAGTTCAATGC GTTCGGCTACAAGACCATTTTTGCGGGAAGCTGGTGGGAACCCACACGCTTCAGTTCCGCGGCGCAGGAGTCCGTCACGA TCCGGGCGGTGCCCCAACTTGCCCGTCTCGCTATCGACCAGTCGGCGGTCGGGTTCTGGCTCGGCGATCTGGGCCTGCCT TATTTCGATGGTCGCGGCGATCAATGTTACCGCGCAAACGAGAAATTTCGCCGGTTGGGCGAGATCGCCCGCGACGGATC GCCAAAACATGTCTTCGCCCATTTTTTGGTTCCGCATCCGCCGTTCGTGCTGAATGCCGACGGAAGTTGTCGCGATCTGG AAACCGCGCGCCGGCGGACGCGATCGGAAAATTATGTCGACCAGGTCCGTTTCACCAACCGCGAAGTCTTGAAGCTCGTC GACCGGATTCTGGCGGGATCGCGGCCGGCGGTCATCGTCATCCACAGCGACGAAGGGCCTTGGCCGACCCCCTATGTCGG CAACGAACACGGCCTTGGAACCGATCCGGTCCCCGTGCCCTGGACCAAATTGTCCGGCAGCCAGTTGAGCGAGAAAATGG GGATACTGCTTGCCGTTCGCGATCCTTCCGGGAAAGCGCCTGCGACAATGCCCGAATCGCCGGTCCAGATTTACCCGGCC GTCCTGCGCGATCATTTCGGATCGTCGCGGCCGCTGCCCGCGTCCCGCTATTATATGTTCAAAGGGGATCGCGCATTGTA CGAATTTGAAGAGGTCGGCGATAGGCTTCTGGCCAGATAG
Upstream 100 bases:
>100_bases CTTTCTCCGGCAGGTACAAGCGCGCGGACGGATTGTCCGCCAGGATCGCATCGGCGATGGCGGGCGCCTGATCGTTACTT ACGACCGGCGCGGTTAGGCG
Downstream 100 bases:
>100_bases CACCCCGCGCCCCGGTTGGGGTGGGCGGATTTATCCCTTCATTAACCTTGTTGTGGCACGTCGGCGAAGCGGACGGATCG GGAACGGCGGTTCCGTCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 519; Mature: 518
Protein sequence:
>519_residues MGALTASVGRYPVAGICITLIAIMTFWSGNQLRLGFESVWPTMVGAIVIAAIVTAFFRAICGDWARAGMACGITAVYFFY VPRLLALLPLPFPMAAALHLAAIAALVALYRTFPSDGTRLRDVAGRLNLLAALLVVVNAVPLAVQQFRLESARAPAQRSL SELDGKAMPDGPDVWHILFDRYAANDTFKAHYGFDNQPFIDALRQRGFVVPDRAYANYQRTSHSIASTMNGTLLDPMARK MSGGDQGDWVPIYRAARNGSAIRQFNAFGYKTIFAGSWWEPTRFSSAAQESVTIRAVPQLARLAIDQSAVGFWLGDLGLP YFDGRGDQCYRANEKFRRLGEIARDGSPKHVFAHFLVPHPPFVLNADGSCRDLETARRRTRSENYVDQVRFTNREVLKLV DRILAGSRPAVIVIHSDEGPWPTPYVGNEHGLGTDPVPVPWTKLSGSQLSEKMGILLAVRDPSGKAPATMPESPVQIYPA VLRDHFGSSRPLPASRYYMFKGDRALYEFEEVGDRLLAR
Sequences:
>Translated_519_residues MGALTASVGRYPVAGICITLIAIMTFWSGNQLRLGFESVWPTMVGAIVIAAIVTAFFRAICGDWARAGMACGITAVYFFY VPRLLALLPLPFPMAAALHLAAIAALVALYRTFPSDGTRLRDVAGRLNLLAALLVVVNAVPLAVQQFRLESARAPAQRSL SELDGKAMPDGPDVWHILFDRYAANDTFKAHYGFDNQPFIDALRQRGFVVPDRAYANYQRTSHSIASTMNGTLLDPMARK MSGGDQGDWVPIYRAARNGSAIRQFNAFGYKTIFAGSWWEPTRFSSAAQESVTIRAVPQLARLAIDQSAVGFWLGDLGLP YFDGRGDQCYRANEKFRRLGEIARDGSPKHVFAHFLVPHPPFVLNADGSCRDLETARRRTRSENYVDQVRFTNREVLKLV DRILAGSRPAVIVIHSDEGPWPTPYVGNEHGLGTDPVPVPWTKLSGSQLSEKMGILLAVRDPSGKAPATMPESPVQIYPA VLRDHFGSSRPLPASRYYMFKGDRALYEFEEVGDRLLAR >Mature_518_residues GALTASVGRYPVAGICITLIAIMTFWSGNQLRLGFESVWPTMVGAIVIAAIVTAFFRAICGDWARAGMACGITAVYFFYV PRLLALLPLPFPMAAALHLAAIAALVALYRTFPSDGTRLRDVAGRLNLLAALLVVVNAVPLAVQQFRLESARAPAQRSLS ELDGKAMPDGPDVWHILFDRYAANDTFKAHYGFDNQPFIDALRQRGFVVPDRAYANYQRTSHSIASTMNGTLLDPMARKM SGGDQGDWVPIYRAARNGSAIRQFNAFGYKTIFAGSWWEPTRFSSAAQESVTIRAVPQLARLAIDQSAVGFWLGDLGLPY FDGRGDQCYRANEKFRRLGEIARDGSPKHVFAHFLVPHPPFVLNADGSCRDLETARRRTRSENYVDQVRFTNREVLKLVD RILAGSRPAVIVIHSDEGPWPTPYVGNEHGLGTDPVPVPWTKLSGSQLSEKMGILLAVRDPSGKAPATMPESPVQIYPAV LRDHFGSSRPLPASRYYMFKGDRALYEFEEVGDRLLAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57267; Mature: 57136
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: PS00012 PHOSPHOPANTETHEINE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGALTASVGRYPVAGICITLIAIMTFWSGNQLRLGFESVWPTMVGAIVIAAIVTAFFRAI CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH CGDWARAGMACGITAVYFFYVPRLLALLPLPFPMAAALHLAAIAALVALYRTFPSDGTRL HHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH RDVAGRLNLLAALLVVVNAVPLAVQQFRLESARAPAQRSLSELDGKAMPDGPDVWHILFD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHH RYAANDTFKAHYGFDNQPFIDALRQRGFVVPDRAYANYQRTSHSIASTMNGTLLDPMARK HHHCCCCEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH MSGGDQGDWVPIYRAARNGSAIRQFNAFGYKTIFAGSWWEPTRFSSAAQESVTIRAVPQL HCCCCCCCCCHHHHHHCCCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCEEEHHHHHH ARLAIDQSAVGFWLGDLGLPYFDGRGDQCYRANEKFRRLGEIARDGSPKHVFAHFLVPHP HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC PFVLNADGSCRDLETARRRTRSENYVDQVRFTNREVLKLVDRILAGSRPAVIVIHSDEGP CEEEECCCCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCC WPTPYVGNEHGLGTDPVPVPWTKLSGSQLSEKMGILLAVRDPSGKAPATMPESPVQIYPA CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHH VLRDHFGSSRPLPASRYYMFKGDRALYEFEEVGDRLLAR HHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCC >Mature Secondary Structure GALTASVGRYPVAGICITLIAIMTFWSGNQLRLGFESVWPTMVGAIVIAAIVTAFFRAI CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH CGDWARAGMACGITAVYFFYVPRLLALLPLPFPMAAALHLAAIAALVALYRTFPSDGTRL HHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH RDVAGRLNLLAALLVVVNAVPLAVQQFRLESARAPAQRSLSELDGKAMPDGPDVWHILFD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHH RYAANDTFKAHYGFDNQPFIDALRQRGFVVPDRAYANYQRTSHSIASTMNGTLLDPMARK HHHCCCCEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH MSGGDQGDWVPIYRAARNGSAIRQFNAFGYKTIFAGSWWEPTRFSSAAQESVTIRAVPQL HCCCCCCCCCHHHHHHCCCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCEEEHHHHHH ARLAIDQSAVGFWLGDLGLPYFDGRGDQCYRANEKFRRLGEIARDGSPKHVFAHFLVPHP HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC PFVLNADGSCRDLETARRRTRSENYVDQVRFTNREVLKLVDRILAGSRPAVIVIHSDEGP CEEEECCCCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCC WPTPYVGNEHGLGTDPVPVPWTKLSGSQLSEKMGILLAVRDPSGKAPATMPESPVQIYPA CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHH VLRDHFGSSRPLPASRYYMFKGDRALYEFEEVGDRLLAR HHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA