| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is mhpC [H]
Identifier: 103487429
GI number: 103487429
Start: 2049670
End: 2050710
Strand: Reverse
Name: mhpC [H]
Synonym: Sala_1945
Alternate gene names: 103487429
Gene position: 2050710-2049670 (Counterclockwise)
Preceding gene: 103487430
Following gene: 103487422
Centisome position: 61.3
GC content: 66.57
Gene sequence:
>1041_bases ATGATAGCCGACGACGATCTGGATTTCGATCCGCCGCCTCCGCCGCGGCGGCCCTTTTTCCGGCGCAAGCGCGTCCTGAT CCCGCTTGCCGTGCTGGCGGCGCTCGTTATCGGCTTTCTGCTGCTCCTGACCCCCGATACCGACCGCGAGGCGATGATCG CCAAATATGGCGGACCGGACGCCGCCTTTGCCGCAGGGCCGGCGGGGCAGCGCATTCACTATCGCGATCAGGGACGCCGC GACGGCCCGGCGATCATGCTGCTCCATGGATCGAACGCCAGCCTTCATACATGGGAGCCGCTGGTCGAACGGCTCGGCGC CGATTACCGCATCGTCACGCTCGATCTGCCGGGGCACGGGCTGACCGGGGCGATTCCCGGTCGCGACTATGACGCCGATG CGATGATGGAAGCGGTCGATGTCGTCGCGGCCAAGCTGGGGCTCCACCATTTCGTTCTCGGCGGCAATTCGATGGGCGGC TGGATCGCCTGGCGCTATGCGCTCGCGCATCCCGCGCGCGTCGATGCGCTGCTCCTCATCGACGCCGCGGGGATGCCGCT GCGCAGGGGGGAGAAGGCCCCCGAATCGAACGTCGGCTTTCGCGTGCTCGAATATCCGTTCGGACGCTGGCTCGCGACGC GGATCACGCCGCGGATGCTCGTCGAACAGTCGCTGTTGGGGTCGGTCGAAAGGCAGGATATCGTCGATGCAGCGATGATC GACCGCTATTGGGAACTGCTGCGCTTCCCCGGCAACCGCGAGGCGACGGTGATCCGCGCGCGCGCCAGCCGCGAACCCGA AATGGCGGCGCGGGTGGGGGAGATTACGGCGCCGACGCTGATCCTGTTCGGGGACAAGGACCGGATTATCAACCCGAGCG CGGCAAAGACGTTCAACGAGCGGATCGCGGGGTCGGAGGTCGTATTGCTCCCTGGAATCGGCCATTTGCCGATGGAAGAA GCGCCCGATCAGGTTGCCACGGCGATTGCCGATTTCCTCACGCGGCGGCTTGCAGCGGCGGCCGCTCCAGAAAGGCGCTG A
Upstream 100 bases:
>100_bases GTTCCTGCCCGAAACCTTCCGCCGGTCGATCCATCAATAGGCGTGCATTGACGCCCGGCGCCCGCACGCTAGGTTTGCGC GGCCTTGAGGGGGGCGTACG
Downstream 100 bases:
>100_bases TCCGCGCCGCGACCGTCCCGGCGTGGGTGAAGGGAAAAAGGTGCGAGCCCGGCACCACCTCCAGCACCGCGCCGTCGATC AGCTCGGCGATCGTCTGTCC
Product: alpha/beta hydrolase fold
Products: 2-oxopent-4-enoate; succinate [C]
Alternate protein names: 2-hydroxy-6-ketonona-2,4-diene-1,9-dioic acid 5,6-hydrolase; 2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioic acid 5,6-hydrolase; 2-hydroxy-6-oxonona-2,4-diene-1,9-dioic acid 5,6-hydrolase [H]
Number of amino acids: Translated: 346; Mature: 346
Protein sequence:
>346_residues MIADDDLDFDPPPPPRRPFFRRKRVLIPLAVLAALVIGFLLLLTPDTDREAMIAKYGGPDAAFAAGPAGQRIHYRDQGRR DGPAIMLLHGSNASLHTWEPLVERLGADYRIVTLDLPGHGLTGAIPGRDYDADAMMEAVDVVAAKLGLHHFVLGGNSMGG WIAWRYALAHPARVDALLLIDAAGMPLRRGEKAPESNVGFRVLEYPFGRWLATRITPRMLVEQSLLGSVERQDIVDAAMI DRYWELLRFPGNREATVIRARASREPEMAARVGEITAPTLILFGDKDRIINPSAAKTFNERIAGSEVVLLPGIGHLPMEE APDQVATAIADFLTRRLAAAAAPERR
Sequences:
>Translated_346_residues MIADDDLDFDPPPPPRRPFFRRKRVLIPLAVLAALVIGFLLLLTPDTDREAMIAKYGGPDAAFAAGPAGQRIHYRDQGRR DGPAIMLLHGSNASLHTWEPLVERLGADYRIVTLDLPGHGLTGAIPGRDYDADAMMEAVDVVAAKLGLHHFVLGGNSMGG WIAWRYALAHPARVDALLLIDAAGMPLRRGEKAPESNVGFRVLEYPFGRWLATRITPRMLVEQSLLGSVERQDIVDAAMI DRYWELLRFPGNREATVIRARASREPEMAARVGEITAPTLILFGDKDRIINPSAAKTFNERIAGSEVVLLPGIGHLPMEE APDQVATAIADFLTRRLAAAAAPERR >Mature_346_residues MIADDDLDFDPPPPPRRPFFRRKRVLIPLAVLAALVIGFLLLLTPDTDREAMIAKYGGPDAAFAAGPAGQRIHYRDQGRR DGPAIMLLHGSNASLHTWEPLVERLGADYRIVTLDLPGHGLTGAIPGRDYDADAMMEAVDVVAAKLGLHHFVLGGNSMGG WIAWRYALAHPARVDALLLIDAAGMPLRRGEKAPESNVGFRVLEYPFGRWLATRITPRMLVEQSLLGSVERQDIVDAAMI DRYWELLRFPGNREATVIRARASREPEMAARVGEITAPTLILFGDKDRIINPSAAKTFNERIAGSEVVLLPGIGHLPMEE APDQVATAIADFLTRRLAAAAAPERR
Specific function: Catalyzes the cleavage of the C5-C6 bond of 2-hydroxy-6- oxononadienedioate and 2-hydroxy-6-oxononatrienedioate, a dienol ring fission product of the bacterial meta-cleavage pathway for degradation of phenylpropionic acid [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AB hydrolase superfamily. MhpC family [H]
Homologues:
Organism=Homo sapiens, GI218777837, Length=277, Percent_Identity=24.5487364620939, Blast_Score=77, Evalue=2e-14, Organism=Escherichia coli, GI87081721, Length=276, Percent_Identity=29.3478260869565, Blast_Score=85, Evalue=6e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR000639 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: 3.7.1.- [C]
Molecular weight: Translated: 37919; Mature: 37919
Theoretical pI: Translated: 6.74; Mature: 6.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIADDDLDFDPPPPPRRPFFRRKRVLIPLAVLAALVIGFLLLLTPDTDREAMIAKYGGPD CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC AAFAAGPAGQRIHYRDQGRRDGPAIMLLHGSNASLHTWEPLVERLGADYRIVTLDLPGHG CCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEEEECCCCC LTGAIPGRDYDADAMMEAVDVVAAKLGLHHFVLGGNSMGGWIAWRYALAHPARVDALLLI CCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEE DAAGMPLRRGEKAPESNVGFRVLEYPFGRWLATRITPRMLVEQSLLGSVERQDIVDAAMI ECCCCCHHCCCCCCCCCCCEEEEECCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH DRYWELLRFPGNREATVIRARASREPEMAARVGEITAPTLILFGDKDRIINPSAAKTFNE HHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHH RIAGSEVVLLPGIGHLPMEEAPDQVATAIADFLTRRLAAAAAPERR HHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MIADDDLDFDPPPPPRRPFFRRKRVLIPLAVLAALVIGFLLLLTPDTDREAMIAKYGGPD CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC AAFAAGPAGQRIHYRDQGRRDGPAIMLLHGSNASLHTWEPLVERLGADYRIVTLDLPGHG CCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEEEECCCCC LTGAIPGRDYDADAMMEAVDVVAAKLGLHHFVLGGNSMGGWIAWRYALAHPARVDALLLI CCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEE DAAGMPLRRGEKAPESNVGFRVLEYPFGRWLATRITPRMLVEQSLLGSVERQDIVDAAMI ECCCCCHHCCCCCCCCCCCEEEEECCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH DRYWELLRFPGNREATVIRARASREPEMAARVGEITAPTLILFGDKDRIINPSAAKTFNE HHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHH RIAGSEVVLLPGIGHLPMEEAPDQVATAIADFLTRRLAAAAAPERR HHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 2-hydroxy-6-ketononadienedicarboxylate; H2O [C]
Specific reaction: 2-hydroxy-6-ketononadienedicarboxylate + H2O = 2-oxopent-4-enoate + succinate [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA