Click here to switch to the map view.

The map label for this gene is ydaM [H]

Identifier: 103487422

GI number: 103487422

Start: 2042976

End: 2044151

Strand: Reverse

Name: ydaM [H]

Synonym: Sala_1938

Alternate gene names: 103487422

Gene position: 2044151-2042976 (Counterclockwise)

Preceding gene: 103487429

Following gene: 103487419

Centisome position: 61.11

GC content: 66.24

Gene sequence:

>1176_bases
ATGTCCGTCGCCTTTGTCCTTGCCATCAACATGTCCGTCGCCGGCCTGATCGCCGCCGCGTTCGCCGTGGTCGCGGTGAC
CAACCGGACCGCGCGGGGCGCGTGGTGGCTGGCGGCCGGATGCGGGCTGGGTATTGTCAATGTCGGTCTGGAGTTCCTGC
TGACGCGGCAAGTCGATCCGACCCCCACGGGCATCAGCATCTTCCTCGTCTTCCTGCTGGCGCAGAGTTTCGCGCTGATC
GGTGTTGCCTCGCATTACCGGGTCGCGCCGCCGTGGATCGCAATCGCCGCAATCTGGGTGCTGACGATCCTGGCCGTGCC
GGTGATTTTCAGCCTGCCGTACGGATCGTCGCCACGGCTGACGCTGTATCAGATGCCCTATTTTGCGATGCAGTCGCTGT
TTGCCATCGTCATCGTGCGATCGGGGCGGCGGCAGGCGCTCGACCTGTTGCTGATCGCGCTACAGATCGTTGCGGCGCTT
ATCTATCTGGCGAAACCGCTGATCGCGGCGGTTGTCGGCACCGCGAGTTCGCCGCAGGGCTATATGGCGTCGACCTATGC
CGCGATTTCGCAAAGCGCCAGCGTCGTTGCGCTGATGGCGATCGCGCTCGTCCTTTTGCTGGTGATGATGCGCGACACGA
CCGCCGAGATCGTGGCGCGGTCGGAAACCGATCCGCTGTCGAGTGTGCTCAACCGGCGCGGGTTCGAACAGCATGCCGGG
ATTGCGCTGCTGCGCTATGGCGAAACGGCAGTGCTGATCGCGGCCGACCTCGACGATTTCAAGACGATCAACGACAGTTT
TGGCCATGCCGCGGGCGACGGCGTGATCGCACATTTCGCCGCGATGCTGGTCGATGCCGCCCCCGCCGACGCGATTGTCG
GGCGGATCGGCGGCGAGGAGTTTGCGGTGCTGCTGCCCGACGCGATGCTGTCCGACGGGCGCATCTATGCCGAAGCGGTG
CGCACCGCCTTTGCCGCGGCACGGCTGCCGGTGCTGGGAGTCGACCGCGGCTTTACCGCCTCCTTCGGCGTTGCGCAGCG
CGGACCCGGAGATTCGCTGTTCGACCTGCTGCGCCGCGCCGATGCCGCGCTTTACCGCGCCAAGGCGGCCGGGCGGAACC
AGGTGCGCGTGGCGCTGGAGGAAATGCCGGTGTCGGCGACGGTGGGCGTCGCATGA

Upstream 100 bases:

>100_bases
GGTCCGCAAGATAGCCGCGCGGACAGGCCGAATCGCAGCCTGTTAACCGAAACTTGGCGACGGGAGGGTTAGGCTTGCCG
ACACCCTTTCGAGTGAGCCC

Downstream 100 bases:

>100_bases
TTGCGCCGTCGCCTGTCGTCCCGGGGAGCTGACCCTAGAGCGCGATGACCTGATATTGACCCTCCGTGACGGAGGCGATT
TTGGCCGAGTGCGAGGCGCG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MSVAFVLAINMSVAGLIAAAFAVVAVTNRTARGAWWLAAGCGLGIVNVGLEFLLTRQVDPTPTGISIFLVFLLAQSFALI
GVASHYRVAPPWIAIAAIWVLTILAVPVIFSLPYGSSPRLTLYQMPYFAMQSLFAIVIVRSGRRQALDLLLIALQIVAAL
IYLAKPLIAAVVGTASSPQGYMASTYAAISQSASVVALMAIALVLLLVMMRDTTAEIVARSETDPLSSVLNRRGFEQHAG
IALLRYGETAVLIAADLDDFKTINDSFGHAAGDGVIAHFAAMLVDAAPADAIVGRIGGEEFAVLLPDAMLSDGRIYAEAV
RTAFAAARLPVLGVDRGFTASFGVAQRGPGDSLFDLLRRADAALYRAKAAGRNQVRVALEEMPVSATVGVA

Sequences:

>Translated_391_residues
MSVAFVLAINMSVAGLIAAAFAVVAVTNRTARGAWWLAAGCGLGIVNVGLEFLLTRQVDPTPTGISIFLVFLLAQSFALI
GVASHYRVAPPWIAIAAIWVLTILAVPVIFSLPYGSSPRLTLYQMPYFAMQSLFAIVIVRSGRRQALDLLLIALQIVAAL
IYLAKPLIAAVVGTASSPQGYMASTYAAISQSASVVALMAIALVLLLVMMRDTTAEIVARSETDPLSSVLNRRGFEQHAG
IALLRYGETAVLIAADLDDFKTINDSFGHAAGDGVIAHFAAMLVDAAPADAIVGRIGGEEFAVLLPDAMLSDGRIYAEAV
RTAFAAARLPVLGVDRGFTASFGVAQRGPGDSLFDLLRRADAALYRAKAAGRNQVRVALEEMPVSATVGVA
>Mature_390_residues
SVAFVLAINMSVAGLIAAAFAVVAVTNRTARGAWWLAAGCGLGIVNVGLEFLLTRQVDPTPTGISIFLVFLLAQSFALIG
VASHYRVAPPWIAIAAIWVLTILAVPVIFSLPYGSSPRLTLYQMPYFAMQSLFAIVIVRSGRRQALDLLLIALQIVAALI
YLAKPLIAAVVGTASSPQGYMASTYAAISQSASVVALMAIALVLLLVMMRDTTAEIVARSETDPLSSVLNRRGFEQHAGI
ALLRYGETAVLIAADLDDFKTINDSFGHAAGDGVIAHFAAMLVDAAPADAIVGRIGGEEFAVLLPDAMLSDGRIYAEAVR
TAFAAARLPVLGVDRGFTASFGVAQRGPGDSLFDLLRRADAALYRAKAAGRNQVRVALEEMPVSATVGVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=185, Percent_Identity=36.2162162162162, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI87082007, Length=158, Percent_Identity=38.6075949367089, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787262, Length=209, Percent_Identity=31.1004784688995, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787802, Length=190, Percent_Identity=30, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786584, Length=162, Percent_Identity=33.9506172839506, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788381, Length=158, Percent_Identity=31.6455696202532, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI145693134, Length=194, Percent_Identity=30.9278350515464, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI87081977, Length=172, Percent_Identity=30.8139534883721, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787541, Length=191, Percent_Identity=28.7958115183246, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 41088; Mature: 40956

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVAFVLAINMSVAGLIAAAFAVVAVTNRTARGAWWLAAGCGLGIVNVGLEFLLTRQVDP
CCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCC
TPTGISIFLVFLLAQSFALIGVASHYRVAPPWIAIAAIWVLTILAVPVIFSLPYGSSPRL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
TLYQMPYFAMQSLFAIVIVRSGRRQALDLLLIALQIVAALIYLAKPLIAAVVGTASSPQG
EEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
YMASTYAAISQSASVVALMAIALVLLLVMMRDTTAEIVARSETDPLSSVLNRRGFEQHAG
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHCCCHHHCC
IALLRYGETAVLIAADLDDFKTINDSFGHAAGDGVIAHFAAMLVDAAPADAIVGRIGGEE
EEEEEECCEEEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCC
FAVLLPDAMLSDGRIYAEAVRTAFAAARLPVLGVDRGFTASFGVAQRGPGDSLFDLLRRA
EEEEECHHHHCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
DAALYRAKAAGRNQVRVALEEMPVSATVGVA
HHHHHHHHHCCCCHHEEHHHHCCCCEECCCC
>Mature Secondary Structure 
SVAFVLAINMSVAGLIAAAFAVVAVTNRTARGAWWLAAGCGLGIVNVGLEFLLTRQVDP
CEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCC
TPTGISIFLVFLLAQSFALIGVASHYRVAPPWIAIAAIWVLTILAVPVIFSLPYGSSPRL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
TLYQMPYFAMQSLFAIVIVRSGRRQALDLLLIALQIVAALIYLAKPLIAAVVGTASSPQG
EEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
YMASTYAAISQSASVVALMAIALVLLLVMMRDTTAEIVARSETDPLSSVLNRRGFEQHAG
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHCCCHHHCC
IALLRYGETAVLIAADLDDFKTINDSFGHAAGDGVIAHFAAMLVDAAPADAIVGRIGGEE
EEEEEECCEEEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCC
FAVLLPDAMLSDGRIYAEAVRTAFAAARLPVLGVDRGFTASFGVAQRGPGDSLFDLLRRA
EEEEECHHHHCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
DAALYRAKAAGRNQVRVALEEMPVSATVGVA
HHHHHHHHHCCCCHHEEHHHHCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]