| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is proP [H]
Identifier: 103487430
GI number: 103487430
Start: 2050771
End: 2052396
Strand: Reverse
Name: proP [H]
Synonym: Sala_1946
Alternate gene names: 103487430
Gene position: 2052396-2050771 (Counterclockwise)
Preceding gene: 103487431
Following gene: 103487429
Centisome position: 61.35
GC content: 63.1
Gene sequence:
>1626_bases ATGATCGACGCAGAGGCAGCGGCACCTATCGTCACCCGCCAGAGCGAACGCAAGGTCATCCTCGCCTCGTCGCTCGGTAC GGTGTTCGAATGGTATGATTTCTACCTCTACGGCCTGCTCGCGACGGTCATTTCGGCGCAGTTCTTCTCTGGCGTCAACG AAACCACGGGCTTCATCTTTGCGCTTGCCGCCTTTGCCGCGGGCTTTGCGGTGCGGCCCTTTGGCGCAGTTGTCTTCGGG CGCATAGGCGACCTCGTCGGGCGCAAGAATACGTTTCTGGTGACCATGGGGCTGATGGGCGCCTCGACGTTCCTCGTCGG CCTGCTGCCCAGCTATGCGTCGATCGGGGTCGCGGCGCCGATCCTGCTCGTTGTCTTGCGCCTTGTGCAAGGACTCGCGC TTGGCGGCGAATATGGCGGCGCTGCCACTTATGTTGCCGAACATGCGCCCGAGGGGAAGCGCGGGCTGTTCACCAGCTTC ATCCAGACCACCGCGACGCTCGGCCTGTTCGCGGCGCTCGGCGTCGTCATCGTCATCCGCTCGGCGATGGGCGAGGCGGC GTTTGCCGACTGGGGCTGGCGCATCCCCTTCCTCATTTCAATCGTCCTGCTCGGCATTTCGCTCTGGATCCGCCTCCAGC TCGAGGAAAGCCCGGTCTTCAGGCAGATGAAGGCAGAGGGGACGACGTCGAAGGCGCCGTTGACCGAAGCCTTCGGCCGC TGGGTAAATCTCAAATGGGTGCTCGTTGCGCTGTTCGGCGCCGTCGCGGGGCAGGCGGTCGTCTGGTACACGGGGCAATT CTATGCGCTATTCTTCCTCGAAAAGACGCTGAAGGTCGATGGCGCGGCGGCGAACATATTGATCGCCATCGCGCTTGCAC TCGGCACACCCTTTTTCATCCTCTTCGGCTGGCTCAGCGACAAGGTGGGGCGCAAACCGATCATCCTCACGGGCTGTGCC CTCGCGGCGCTGACCTATTTCCCGGTGTTCCAGATGCTGACCGCTGCGGCCAATCCGGCGCTCGCCGAGGCACAGGCGCG GGCGCCTGTTGTCGTGTTCGCCCATCCCGAGACATGCTCGTTCCAGTTTGACCCTATTGGCCGCACCTCGTTCGACCGGA CGGGCTGCGACATCGCCAAGTCAGCGCTCGCCAGAGCGGGGATCCCTTATGCCAATGAGGATGGACCATATGATGGTCGC GCGCTTGTCCGCGTCGGCGATGAAGACATCCCGGTGATCGACAAGGCCCAATTCGGCGCTGCGCTTACACCCGCGCTCGC CGCGGCCGGCTATCCACCGAAAGCCGATCCCGCCGCGATCGACAAGCCGCTCGTCGTCGCGATCCTCTTCTACCTCGTGC TGCTCGTGACGATGGTTTATGGCCCGATCGCCGCTTTGCTCGTGGAGCTGTTTCCCAGCCGCATCCGTTACACCGCCATG TCGTTGCCCTATCATATCGGCAACGGCTGGTTCGGCGGATTTCTGCCGACGACGGCGTTCGCGATGGTCGCCGCGACGGG CAATATCTATTACGGCCTCTGGTATCCGGTCATCGTCGCGGTGATCACGCTGGTGGTCGGCCTGTTGTTCCTGCCCGAAA CCTTCCGCCGGTCGATCCATCAATAG
Upstream 100 bases:
>100_bases ACAAAGGCGCGGTGAAGCGCGTCGGTTGACGCACTGTTGACATGCGTTAGACCCTCTTGGCCCCTCTCCTTCAGGGGAGG GGCTTGGCAAGGGGCAGCGG
Downstream 100 bases:
>100_bases GCGTGCATTGACGCCCGGCGCCCGCACGCTAGGTTTGCGCGGCCTTGAGGGGGGCGTACGATGATAGCCGACGACGATCT GGATTTCGATCCGCCGCCTC
Product: major facilitator transporter
Products: betaine [Cytoplasm]; Proton [Cytoplasm]; L-proline [Cytoplasm] [C]
Alternate protein names: Proline porter II; PPII [H]
Number of amino acids: Translated: 541; Mature: 541
Protein sequence:
>541_residues MIDAEAAAPIVTRQSERKVILASSLGTVFEWYDFYLYGLLATVISAQFFSGVNETTGFIFALAAFAAGFAVRPFGAVVFG RIGDLVGRKNTFLVTMGLMGASTFLVGLLPSYASIGVAAPILLVVLRLVQGLALGGEYGGAATYVAEHAPEGKRGLFTSF IQTTATLGLFAALGVVIVIRSAMGEAAFADWGWRIPFLISIVLLGISLWIRLQLEESPVFRQMKAEGTTSKAPLTEAFGR WVNLKWVLVALFGAVAGQAVVWYTGQFYALFFLEKTLKVDGAAANILIAIALALGTPFFILFGWLSDKVGRKPIILTGCA LAALTYFPVFQMLTAAANPALAEAQARAPVVVFAHPETCSFQFDPIGRTSFDRTGCDIAKSALARAGIPYANEDGPYDGR ALVRVGDEDIPVIDKAQFGAALTPALAAAGYPPKADPAAIDKPLVVAILFYLVLLVTMVYGPIAALLVELFPSRIRYTAM SLPYHIGNGWFGGFLPTTAFAMVAATGNIYYGLWYPVIVAVITLVVGLLFLPETFRRSIHQ
Sequences:
>Translated_541_residues MIDAEAAAPIVTRQSERKVILASSLGTVFEWYDFYLYGLLATVISAQFFSGVNETTGFIFALAAFAAGFAVRPFGAVVFG RIGDLVGRKNTFLVTMGLMGASTFLVGLLPSYASIGVAAPILLVVLRLVQGLALGGEYGGAATYVAEHAPEGKRGLFTSF IQTTATLGLFAALGVVIVIRSAMGEAAFADWGWRIPFLISIVLLGISLWIRLQLEESPVFRQMKAEGTTSKAPLTEAFGR WVNLKWVLVALFGAVAGQAVVWYTGQFYALFFLEKTLKVDGAAANILIAIALALGTPFFILFGWLSDKVGRKPIILTGCA LAALTYFPVFQMLTAAANPALAEAQARAPVVVFAHPETCSFQFDPIGRTSFDRTGCDIAKSALARAGIPYANEDGPYDGR ALVRVGDEDIPVIDKAQFGAALTPALAAAGYPPKADPAAIDKPLVVAILFYLVLLVTMVYGPIAALLVELFPSRIRYTAM SLPYHIGNGWFGGFLPTTAFAMVAATGNIYYGLWYPVIVAVITLVVGLLFLPETFRRSIHQ >Mature_541_residues MIDAEAAAPIVTRQSERKVILASSLGTVFEWYDFYLYGLLATVISAQFFSGVNETTGFIFALAAFAAGFAVRPFGAVVFG RIGDLVGRKNTFLVTMGLMGASTFLVGLLPSYASIGVAAPILLVVLRLVQGLALGGEYGGAATYVAEHAPEGKRGLFTSF IQTTATLGLFAALGVVIVIRSAMGEAAFADWGWRIPFLISIVLLGISLWIRLQLEESPVFRQMKAEGTTSKAPLTEAFGR WVNLKWVLVALFGAVAGQAVVWYTGQFYALFFLEKTLKVDGAAANILIAIALALGTPFFILFGWLSDKVGRKPIILTGCA LAALTYFPVFQMLTAAANPALAEAQARAPVVVFAHPETCSFQFDPIGRTSFDRTGCDIAKSALARAGIPYANEDGPYDGR ALVRVGDEDIPVIDKAQFGAALTPALAAAGYPPKADPAAIDKPLVVAILFYLVLLVTMVYGPIAALLVELFPSRIRYTAM SLPYHIGNGWFGGFLPTTAFAMVAATGNIYYGLWYPVIVAVITLVVGLLFLPETFRRSIHQ
Specific function: Proton symporter that senses osmotic shifts and responds by importing osmolytes such as proline, glycine betaine, stachydrine, pipecolic acid, ectoine and taurine. It is both an osmosensor and an osmoregulator which is available to participate early in th
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1790550, Length=351, Percent_Identity=35.6125356125356, Blast_Score=209, Evalue=3e-55, Organism=Escherichia coli, GI1788292, Length=327, Percent_Identity=37.6146788990826, Blast_Score=199, Evalue=3e-52, Organism=Escherichia coli, GI1788942, Length=336, Percent_Identity=35.1190476190476, Blast_Score=172, Evalue=4e-44, Organism=Escherichia coli, GI1789941, Length=345, Percent_Identity=35.0724637681159, Blast_Score=158, Evalue=1e-39, Organism=Escherichia coli, GI87082231, Length=222, Percent_Identity=28.3783783783784, Blast_Score=82, Evalue=9e-17, Organism=Escherichia coli, GI87082404, Length=317, Percent_Identity=24.6056782334385, Blast_Score=68, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR015041 - InterPro: IPR005828 - InterPro: IPR005829 [H]
Pfam domain/function: PF08946 Osmo_CC; PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 57890; Mature: 57890
Theoretical pI: Translated: 8.37; Mature: 8.37
Prosite motif: PS50850 MFS ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDAEAAAPIVTRQSERKVILASSLGTVFEWYDFYLYGLLATVISAQFFSGVNETTGFIF CCCCHHCCCHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH ALAAFAAGFAVRPFGAVVFGRIGDLVGRKNTFLVTMGLMGASTFLVGLLPSYASIGVAAP HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH ILLVVLRLVQGLALGGEYGGAATYVAEHAPEGKRGLFTSFIQTTATLGLFAALGVVIVIR HHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH SAMGEAAFADWGWRIPFLISIVLLGISLWIRLQLEESPVFRQMKAEGTTSKAPLTEAFGR HHHCCHHHHCCCCCHHHHHHHHHHHHHHHEEEEECCCHHHHHHHCCCCCCCCCHHHHHHH WVNLKWVLVALFGAVAGQAVVWYTGQFYALFFLEKTLKVDGAAANILIAIALALGTPFFI HCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHH LFGWLSDKVGRKPIILTGCALAALTYFPVFQMLTAAANPALAEAQARAPVVVFAHPETCS HHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCC FQFDPIGRTSFDRTGCDIAKSALARAGIPYANEDGPYDGRALVRVGDEDIPVIDKAQFGA EEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHCCC ALTPALAAAGYPPKADPAAIDKPLVVAILFYLVLLVTMVYGPIAALLVELFPSRIRYTAM HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLPYHIGNGWFGGFLPTTAFAMVAATGNIYYGLWYPVIVAVITLVVGLLFLPETFRRSIH CCCEECCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHC Q C >Mature Secondary Structure MIDAEAAAPIVTRQSERKVILASSLGTVFEWYDFYLYGLLATVISAQFFSGVNETTGFIF CCCCHHCCCHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH ALAAFAAGFAVRPFGAVVFGRIGDLVGRKNTFLVTMGLMGASTFLVGLLPSYASIGVAAP HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH ILLVVLRLVQGLALGGEYGGAATYVAEHAPEGKRGLFTSFIQTTATLGLFAALGVVIVIR HHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH SAMGEAAFADWGWRIPFLISIVLLGISLWIRLQLEESPVFRQMKAEGTTSKAPLTEAFGR HHHCCHHHHCCCCCHHHHHHHHHHHHHHHEEEEECCCHHHHHHHCCCCCCCCCHHHHHHH WVNLKWVLVALFGAVAGQAVVWYTGQFYALFFLEKTLKVDGAAANILIAIALALGTPFFI HCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHH LFGWLSDKVGRKPIILTGCALAALTYFPVFQMLTAAANPALAEAQARAPVVVFAHPETCS HHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCC FQFDPIGRTSFDRTGCDIAKSALARAGIPYANEDGPYDGRALVRVGDEDIPVIDKAQFGA EEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHCCC ALTPALAAAGYPPKADPAAIDKPLVVAILFYLVLLVTMVYGPIAALLVELFPSRIRYTAM HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLPYHIGNGWFGGFLPTTAFAMVAATGNIYYGLWYPVIVAVITLVVGLLFLPETFRRSIH CCCEECCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHC Q C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: betaine [Periplasm]; Proton [Periplasm]; L-proline [Periplasm] [C]
Specific reaction: Proton [Periplasm] + betaine [Periplasm] = Proton [Cytoplasm] + betaine [Cytoplasm] Proton [Periplasm] + L-proline [Periplasm] = Proton [Cytoplasm] + L-proline [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]