The gene/protein map for NC_008048 is currently unavailable.
Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487409

Identifier: 103487409

GI number: 103487409

Start: 2029269

End: 2030975

Strand: Reverse

Name: 103487409

Synonym: Sala_1925

Alternate gene names: NA

Gene position: 2030975-2029269 (Counterclockwise)

Preceding gene: 103487410

Following gene: 103487408

Centisome position: 60.71

GC content: 68.66

Gene sequence:

>1707_bases
ATGAACGCGCATCTTGCCTTGCGCGGCGCGAGTATGCTGGTCGCGCTATCGCTCGCGGGAGCCGCGACCAGCGCGCACGC
CCAGTTTTCGGGCGATCCGGGCGCAAGCGACGCGCCGCCGAGCGCGCCGCAAGCCGAATCGGGCCGCGCGGCGTCGCGCG
CCGAAGGCCGCCGCGCGCAGAAGACGGTCGACGTCAGCCCCTATCTCGAAATCGGGCAGGTGCTCACCGCCGACCTGAAG
AATGGCGGCGACGTGCTCACCTATACGACCGTCGCGGCCGGCATCGACGCCGCGATCGTCACGCGGCGCGCCGAAGTGGC
GGCGACGCTGCGCTATGAACATCGCTTCGGCTGGAACGGCGATCTTGGCGATTCGGGCACGATCAGCGGCCTGGCGCGCG
GGCGGATCGAGGCGGCGCGCGGACTCAATCTGGAGGCGGGGGCGCTGGCGACGCGCACGCGCGCCGACGGGCAGGGCGCC
GACAGCGGGTTGTTCATCGGCGATGCCAGCAATGTCGCGGACCTTTATTCCATCTATGCCGGGCCGACCTTTGCACGGCG
CATCGCCGGGCTCGACGTCGGCGCGGGTTATCGCTTCGGCTATACCAAGGTCGATATCGACACCCCCGCGATCCTGTCGC
CGGGCAGCCGGCCGCAGGATATTTTCGACAGTTCGACCAACCACGTCGCCTGGGCCAGCGTCGGCGCGCGGCCCGGCGAC
CTGCCGTTCGGCTGGCAGGTGTCGGGTGGTTACGAGCGCGAGGATGCGAGCCAGCTCGACCAGCGTTTCGAGGGCAAATA
TGCGCGCGCCGACGTCACCGTGCCGGTCGGCCCGACCGTCGCGTTGCTGGGCGGCGTCGGTTACGAGGACATCGAAATCG
GCCAGCGCGATCCGGTGCTCGACGCGAATGGCCTTCCGGTGCGCGACGCGAACGGTCGTTTCGTCACCGACAAATCGACC
CCGCGCCGCCTGTCGTTCGACACCGACGGGCTGATCTGGGACGCCGGGGTGATGTGGCGCCCGAGCCGCCGCACCTCGCT
CACCGCCCGCGTCGGGCGGCGCTATGGCGACACCATCTATACGGGCAGCTTCGCCTATCGCGCCGATCATGCGACGACGG
TGCAGGTCGGCGTCTATGACGGGCTGTCGAGCCTCGGACGCGGGCTGTCGGGCGGGCTGGCGGCGCTGCCGACGCAGTTC
GACCCGACGCGCAATCCGATCGACGGCGACATCAATCCCTGCGTCTTTGGCCAGCAGGGCGGCGGCTGTCTCAACAACCA
GCTCGGCAACGCCACCGCGGCGCAATATCGCAGCCGCGGGGTGCAGGCGACGATGTCGTCGCGTTATGGCCGCTGGGCCT
ATGGCGTCGGCGTCGGTTACGATCAGCGCCGCCTGCTCGCGCCGCAGCTGTCGCCGATCGCCGACCTTGACGGGATCACG
GACGAAAACTGGTATCTTTTCGTGTCCGCAGGGCGCCAGCTTGACGCCGATTCGGACCTCAGCCTGTCGGGCTATGTCAA
TTATTTCGACAATGGCGCGCCGGGTGCCAGCGACGTCCAGTCGGCGGGGCTGGCGGCCGCCTATTCACGGCGCTTCTGGC
GCGGCCTGACCGGCACCGCGGCGGCCAGCCTCAACGCTTTCGATCAGGACGGCTTCAACAGCCAGCTCATAGGTTCAGCT
TTGGTGGGACTGCGTTACAACTTCTGA

Upstream 100 bases:

>100_bases
TGATGGGCGCGTGTCCGCAGATCCAGCTGCTTCTGAACGGGGTCAAATTCTCGCCGGGCGGGCGCCGCTTCGGCACCTAT
TACGGACAGGGAAGCGCCTG

Downstream 100 bases:

>100_bases
CCAAGCAACGGGATTTTTTGCGATGTACGATCAGTATTATGGTTTCACCGGCCGTCCGTTCCAGCTGACGCCAGATCCGC
ATTTCTATTTCGAGAGCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 568; Mature: 568

Protein sequence:

>568_residues
MNAHLALRGASMLVALSLAGAATSAHAQFSGDPGASDAPPSAPQAESGRAASRAEGRRAQKTVDVSPYLEIGQVLTADLK
NGGDVLTYTTVAAGIDAAIVTRRAEVAATLRYEHRFGWNGDLGDSGTISGLARGRIEAARGLNLEAGALATRTRADGQGA
DSGLFIGDASNVADLYSIYAGPTFARRIAGLDVGAGYRFGYTKVDIDTPAILSPGSRPQDIFDSSTNHVAWASVGARPGD
LPFGWQVSGGYEREDASQLDQRFEGKYARADVTVPVGPTVALLGGVGYEDIEIGQRDPVLDANGLPVRDANGRFVTDKST
PRRLSFDTDGLIWDAGVMWRPSRRTSLTARVGRRYGDTIYTGSFAYRADHATTVQVGVYDGLSSLGRGLSGGLAALPTQF
DPTRNPIDGDINPCVFGQQGGGCLNNQLGNATAAQYRSRGVQATMSSRYGRWAYGVGVGYDQRRLLAPQLSPIADLDGIT
DENWYLFVSAGRQLDADSDLSLSGYVNYFDNGAPGASDVQSAGLAAAYSRRFWRGLTGTAAASLNAFDQDGFNSQLIGSA
LVGLRYNF

Sequences:

>Translated_568_residues
MNAHLALRGASMLVALSLAGAATSAHAQFSGDPGASDAPPSAPQAESGRAASRAEGRRAQKTVDVSPYLEIGQVLTADLK
NGGDVLTYTTVAAGIDAAIVTRRAEVAATLRYEHRFGWNGDLGDSGTISGLARGRIEAARGLNLEAGALATRTRADGQGA
DSGLFIGDASNVADLYSIYAGPTFARRIAGLDVGAGYRFGYTKVDIDTPAILSPGSRPQDIFDSSTNHVAWASVGARPGD
LPFGWQVSGGYEREDASQLDQRFEGKYARADVTVPVGPTVALLGGVGYEDIEIGQRDPVLDANGLPVRDANGRFVTDKST
PRRLSFDTDGLIWDAGVMWRPSRRTSLTARVGRRYGDTIYTGSFAYRADHATTVQVGVYDGLSSLGRGLSGGLAALPTQF
DPTRNPIDGDINPCVFGQQGGGCLNNQLGNATAAQYRSRGVQATMSSRYGRWAYGVGVGYDQRRLLAPQLSPIADLDGIT
DENWYLFVSAGRQLDADSDLSLSGYVNYFDNGAPGASDVQSAGLAAAYSRRFWRGLTGTAAASLNAFDQDGFNSQLIGSA
LVGLRYNF
>Mature_568_residues
MNAHLALRGASMLVALSLAGAATSAHAQFSGDPGASDAPPSAPQAESGRAASRAEGRRAQKTVDVSPYLEIGQVLTADLK
NGGDVLTYTTVAAGIDAAIVTRRAEVAATLRYEHRFGWNGDLGDSGTISGLARGRIEAARGLNLEAGALATRTRADGQGA
DSGLFIGDASNVADLYSIYAGPTFARRIAGLDVGAGYRFGYTKVDIDTPAILSPGSRPQDIFDSSTNHVAWASVGARPGD
LPFGWQVSGGYEREDASQLDQRFEGKYARADVTVPVGPTVALLGGVGYEDIEIGQRDPVLDANGLPVRDANGRFVTDKST
PRRLSFDTDGLIWDAGVMWRPSRRTSLTARVGRRYGDTIYTGSFAYRADHATTVQVGVYDGLSSLGRGLSGGLAALPTQF
DPTRNPIDGDINPCVFGQQGGGCLNNQLGNATAAQYRSRGVQATMSSRYGRWAYGVGVGYDQRRLLAPQLSPIADLDGIT
DENWYLFVSAGRQLDADSDLSLSGYVNYFDNGAPGASDVQSAGLAAAYSRRFWRGLTGTAAASLNAFDQDGFNSQLIGSA
LVGLRYNF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59857; Mature: 59857

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAHLALRGASMLVALSLAGAATSAHAQFSGDPGASDAPPSAPQAESGRAASRAEGRRAQ
CCCEEEECCCCEEEEEEHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCHHH
KTVDVSPYLEIGQVLTADLKNGGDVLTYTTVAAGIDAAIVTRRAEVAATLRYEHRFGWNG
EEECCCCHHHHHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHHHHHHEEEEEEEECCCCCC
DLGDSGTISGLARGRIEAARGLNLEAGALATRTRADGQGADSGLFIGDASNVADLYSIYA
CCCCCCCHHHHHHCHHHHHCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCHHHHHHHHC
GPTFARRIAGLDVGAGYRFGYTKVDIDTPAILSPGSRPQDIFDSSTNHVAWASVGARPGD
CCHHHHHHHCCCCCCCCCCCCEEEECCCCCEECCCCCCHHHHCCCCCEEEEEECCCCCCC
LPFGWQVSGGYEREDASQLDQRFEGKYARADVTVPVGPTVALLGGVGYEDIEIGQRDPVL
CCCCEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCC
DANGLPVRDANGRFVTDKSTPRRLSFDTDGLIWDAGVMWRPSRRTSLTARVGRRYGDTIY
CCCCCEEECCCCCEEECCCCCCEEECCCCCEEECCCCEECCCCCCHHHHHHHHHCCCEEE
TGSFAYRADHATTVQVGVYDGLSSLGRGLSGGLAALPTQFDPTRNPIDGDINPCVFGQQG
ECCEEEECCCCEEEEEEEHHCHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCC
GGCLNNQLGNATAAQYRSRGVQATMSSRYGRWAYGVGVGYDQRRLLAPQLSPIADLDGIT
CCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCHHCCCCCCCCHHCCCCC
DENWYLFVSAGRQLDADSDLSLSGYVNYFDNGAPGASDVQSAGLAAAYSRRFWRGLTGTA
CCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
AASLNAFDQDGFNSQLIGSALVGLRYNF
HHHCCCCCCCCCCHHHHHHHHHEEEECC
>Mature Secondary Structure
MNAHLALRGASMLVALSLAGAATSAHAQFSGDPGASDAPPSAPQAESGRAASRAEGRRAQ
CCCEEEECCCCEEEEEEHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCHHH
KTVDVSPYLEIGQVLTADLKNGGDVLTYTTVAAGIDAAIVTRRAEVAATLRYEHRFGWNG
EEECCCCHHHHHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHHHHHHEEEEEEEECCCCCC
DLGDSGTISGLARGRIEAARGLNLEAGALATRTRADGQGADSGLFIGDASNVADLYSIYA
CCCCCCCHHHHHHCHHHHHCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCHHHHHHHHC
GPTFARRIAGLDVGAGYRFGYTKVDIDTPAILSPGSRPQDIFDSSTNHVAWASVGARPGD
CCHHHHHHHCCCCCCCCCCCCEEEECCCCCEECCCCCCHHHHCCCCCEEEEEECCCCCCC
LPFGWQVSGGYEREDASQLDQRFEGKYARADVTVPVGPTVALLGGVGYEDIEIGQRDPVL
CCCCEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCC
DANGLPVRDANGRFVTDKSTPRRLSFDTDGLIWDAGVMWRPSRRTSLTARVGRRYGDTIY
CCCCCEEECCCCCEEECCCCCCEEECCCCCEEECCCCEECCCCCCHHHHHHHHHCCCEEE
TGSFAYRADHATTVQVGVYDGLSSLGRGLSGGLAALPTQFDPTRNPIDGDINPCVFGQQG
ECCEEEECCCCEEEEEEEHHCHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCC
GGCLNNQLGNATAAQYRSRGVQATMSSRYGRWAYGVGVGYDQRRLLAPQLSPIADLDGIT
CCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCHHCCCCCCCCHHCCCCC
DENWYLFVSAGRQLDADSDLSLSGYVNYFDNGAPGASDVQSAGLAAAYSRRFWRGLTGTA
CCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
AASLNAFDQDGFNSQLIGSALVGLRYNF
HHHCCCCCCCCCCHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA