| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yveL [H]
Identifier: 103487410
GI number: 103487410
Start: 2030975
End: 2031967
Strand: Reverse
Name: yveL [H]
Synonym: Sala_1926
Alternate gene names: 103487410
Gene position: 2031967-2030975 (Counterclockwise)
Preceding gene: 103487411
Following gene: 103487409
Centisome position: 60.74
GC content: 67.98
Gene sequence:
>993_bases ATGAACGACCAACGCAAAATCAAGCGTCCACCCTCGCTGCTCGAACGCGCTGCCGACATGTTCGGGCTCGACCCCGTCGG CAATGCGCCGACGATCGACGTATCGAGCCTGCCGCCCGAACCGGAGAAGAAGGCGAAGAAGGTCAAGGCGGAGCCCGTCG CCGGTGCGCCGACCGCCGAACACTGCGAACCCGTCGTCGAAACCGCACCGTCGCCGGGCAAGGAGCTTGCAAAGGCCGCG CCCGCGATCGTGCCGACGCGGCAGGGGACGATCGATCGCGAGCGGCTTGCGGCGCACGGGATGGTCGTGCCGGGCACCCC GGTCACGGGCATTTCCGAAGAATATCGCATCGTGAAGCGCGAGTTGATCCGCAATATCGGCGGCGCGGGCAATCGCCCGA TCCTGCCGCGCGGGCACCGCGTGCTGATCGCCTCGGCCAATCCGGGCGAGGGCAAGACCTTTTCGGCGGTCAATCTGGCG CTCAGCCTGGCAGTCGAGGCCGATCACGACGTGCTGCTGATCGACGCCGACATTGCGAAGCCGAGCGTGCTCGACACGCT CGGGCTGGAAAATGGCCCCGGCCTGATGGATGCGCTCGCCGACCCGCATCTGGCGGTTGGCGACTGCCTGATCCAGACCG ACATTCCGGGGCTGAAAGTCATGCCCGCGGGCGCGCATCACATGCACGACACCGAATTGCTCGCCTCGGCGCGGACGGAG GCGCTGCTCGCGCAGCTCGAAGCCGGGGCGCCGGGGCGCATCCTGATCCTCGATTCGCCGCCGATTCTCGCGGCATCGCC CGCGGCGGTGCTCGCGGGGCATGTCGGACAGACGATCCTGGTCGTGCGCGCCGACACGACGCTTGAAAGCGCGCTGCGCG ACGCGATCGGGCTGATGGGCGCGTGTCCGCAGATCCAGCTGCTTCTGAACGGGGTCAAATTCTCGCCGGGCGGGCGCCGC TTCGGCACCTATTACGGACAGGGAAGCGCCTGA
Upstream 100 bases:
>100_bases GGCTGGCAGGGGGAGGAGGCGCGCTCGTCGGGCTTTATGCGTTGCTGCTGGTCGTAGAGTTCATCCAGCGCGGCATGGTT GCGTGACGGGGGACGATGAC
Downstream 100 bases:
>100_bases TGAACGCGCATCTTGCCTTGCGCGGCGCGAGTATGCTGGTCGCGCTATCGCTCGCGGGAGCCGCGACCAGCGCGCACGCC CAGTTTTCGGGCGATCCGGG
Product: protein-tyrosine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 330; Mature: 330
Protein sequence:
>330_residues MNDQRKIKRPPSLLERAADMFGLDPVGNAPTIDVSSLPPEPEKKAKKVKAEPVAGAPTAEHCEPVVETAPSPGKELAKAA PAIVPTRQGTIDRERLAAHGMVVPGTPVTGISEEYRIVKRELIRNIGGAGNRPILPRGHRVLIASANPGEGKTFSAVNLA LSLAVEADHDVLLIDADIAKPSVLDTLGLENGPGLMDALADPHLAVGDCLIQTDIPGLKVMPAGAHHMHDTELLASARTE ALLAQLEAGAPGRILILDSPPILAASPAAVLAGHVGQTILVVRADTTLESALRDAIGLMGACPQIQLLLNGVKFSPGGRR FGTYYGQGSA
Sequences:
>Translated_330_residues MNDQRKIKRPPSLLERAADMFGLDPVGNAPTIDVSSLPPEPEKKAKKVKAEPVAGAPTAEHCEPVVETAPSPGKELAKAA PAIVPTRQGTIDRERLAAHGMVVPGTPVTGISEEYRIVKRELIRNIGGAGNRPILPRGHRVLIASANPGEGKTFSAVNLA LSLAVEADHDVLLIDADIAKPSVLDTLGLENGPGLMDALADPHLAVGDCLIQTDIPGLKVMPAGAHHMHDTELLASARTE ALLAQLEAGAPGRILILDSPPILAASPAAVLAGHVGQTILVVRADTTLESALRDAIGLMGACPQIQLLLNGVKFSPGGRR FGTYYGQGSA >Mature_330_residues MNDQRKIKRPPSLLERAADMFGLDPVGNAPTIDVSSLPPEPEKKAKKVKAEPVAGAPTAEHCEPVVETAPSPGKELAKAA PAIVPTRQGTIDRERLAAHGMVVPGTPVTGISEEYRIVKRELIRNIGGAGNRPILPRGHRVLIASANPGEGKTFSAVNLA LSLAVEADHDVLLIDADIAKPSVLDTLGLENGPGLMDALADPHLAVGDCLIQTDIPGLKVMPAGAHHMHDTELLASARTE ALLAQLEAGAPGRILILDSPPILAASPAAVLAGHVGQTILVVRADTTLESALRDAIGLMGACPQIQLLLNGVKFSPGGRR FGTYYGQGSA
Specific function: Required For The Extracellular Polysaccharide Colanic Acid Synthesis. The Autophosphorylated Form Is Inactive. Probably Involved In The Export Of Colanic Acid From The Cell To Medium. [C]
COG id: COG0489
COG function: function code D; ATPases involved in chromosome partitioning
Gene ontology:
Cell location: Inner membrane (Probable) [C]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CpsD/CapB family [H]
Homologues:
Organism=Escherichia coli, GI87082032, Length=167, Percent_Identity=31.7365269461078, Blast_Score=65, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002586 - InterPro: IPR005702 [H]
Pfam domain/function: PF01656 CbiA [H]
EC number: =2.7.10.2 [H]
Molecular weight: Translated: 34332; Mature: 34332
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDQRKIKRPPSLLERAADMFGLDPVGNAPTIDVSSLPPEPEKKAKKVKAEPVAGAPTAE CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCHH HCEPVVETAPSPGKELAKAAPAIVPTRQGTIDRERLAAHGMVVPGTPVTGISEEYRIVKR HCCHHHHCCCCCHHHHHHHCCCEECCCCCCCCHHHHHHCCEEECCCCCCCCCHHHHHHHH ELIRNIGGAGNRPILPRGHRVLIASANPGEGKTFSAVNLALSLAVEADHDVLLIDADIAK HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEEHHEEEEEEEEEECCCCEEEEECCCCC PSVLDTLGLENGPGLMDALADPHLAVGDCLIQTDIPGLKVMPAGAHHMHDTELLASARTE CHHHHHHCCCCCCCHHHHHCCCCEECCCEEEECCCCCEEEECCCCCCCCHHHHHHHHHHH ALLAQLEAGAPGRILILDSPPILAASPAAVLAGHVGQTILVVRADTTLESALRDAIGLMG HHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHC ACPQIQLLLNGVKFSPGGRRFGTYYGQGSA CCCHHHHHHCCCEECCCCCEECCCCCCCCC >Mature Secondary Structure MNDQRKIKRPPSLLERAADMFGLDPVGNAPTIDVSSLPPEPEKKAKKVKAEPVAGAPTAE CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCHH HCEPVVETAPSPGKELAKAAPAIVPTRQGTIDRERLAAHGMVVPGTPVTGISEEYRIVKR HCCHHHHCCCCCHHHHHHHCCCEECCCCCCCCHHHHHHCCEEECCCCCCCCCHHHHHHHH ELIRNIGGAGNRPILPRGHRVLIASANPGEGKTFSAVNLALSLAVEADHDVLLIDADIAK HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEEHHEEEEEEEEEECCCCEEEEECCCCC PSVLDTLGLENGPGLMDALADPHLAVGDCLIQTDIPGLKVMPAGAHHMHDTELLASARTE CHHHHHHCCCCCCCHHHHHCCCCEECCCEEEECCCCCEEEECCCCCCCCHHHHHHHHHHH ALLAQLEAGAPGRILILDSPPILAASPAAVLAGHVGQTILVVRADTTLESALRDAIGLMG HHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHC ACPQIQLLLNGVKFSPGGRRFGTYYGQGSA CCCHHHHHHCCCEECCCCCEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]