| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487405
Identifier: 103487405
GI number: 103487405
Start: 2024692
End: 2025897
Strand: Reverse
Name: 103487405
Synonym: Sala_1921
Alternate gene names: NA
Gene position: 2025897-2024692 (Counterclockwise)
Preceding gene: 103487406
Following gene: 103487404
Centisome position: 60.56
GC content: 70.07
Gene sequence:
>1206_bases ATGCCTGAAATCCTGTTCCTCGTGCATCGCGCGCCGTGGCCGCCCGACCGCGGCGACCGCATCCGCAGCTGGCATATGTT CGAGGCGCTGGCGAAACTGGCGCCGGTGCATGTGGCGGCGCTCGCCGATAATGATGCCGATGCCGCACTTGCGCGCGCGA AACTGGCGCCGCTTTGCAAGAGCCTGGCGATCGAAGGGCGCCGGGTGTCGCGTCCGATCGCCTTGGCAGAGGCCGTGCTG CGCCGTGAGCCGGTGTCGATCCACCTGTTTCGGAGCAAGGCCCTGGCGCGTCAGGTCGATGCGCTGATCGGGCGGGGCGA CATCAGCCATATCGTCGCCTTTTCGGGGCAGATGGCGCAATATCTGCCCGCCCGGTTCGACGGCCCGGTGCTGATGGATT TCGTCGACGTCGATTCGGCCAAGTTCGGCGCCTACGCCAAGCAGGACAGGCGCCAGCCGCTCAACTGGGTGCATCGGCGC GAGGCGCGGGTGCTCGGCGCCTATGAGGTCGGGATCGCGCGGCGCGTCGCCGCCAGCCTGTTCGTCAGCGAGGCCGAAGC GGCGCTCTTTCGGCAAAAGAGCGGGTTGGCGGCCGATAAGGTGCTGGCGGTCGGGAACGGGATCGACACCGATCGTTTCG ACCCGGCGCTGCCGTTTGATCCGGTGGGTCATGGCGACGGGCCGCTTGCGGTGTTCACCGGGCAGATGGACTATCGCCCC AATATCGACGCGGCGCGCTGGTTCGCCGCCGATATTTTGCCGCTGATCCGGCGGCGACACCCCGCGGCGCGCTTCGCGGT CGTCGGGCGCGCGCCGAGCGCGGAGGTGCGCGCGCTCGCGAAGCAGCCCGGCGTGATCGTGACCGGCGAAGTGCCCGACG TGCGGCCGTGGCTTGCCGCCGCCGACGCGGTGGTGGCCCCGCTCCTGCTCGCGCGCGGTGTGCAGAACAAATTGCTCGAG GCGATGGCGATGGCGCGACCGGTAGTGGCGAGCGCCGCCGCGGCGACGGGAATCGACGCGGCGCCGGGCGAACATCTGCT CGTCGCGGATGATGCCGCGGCGATGGCCGACGCGGTGTGCATGCTGTTCGGCGATCGCGATGCGGCGGCGCACATGGGAC AGGCGGCACGCGCACGGATGATCGCGCGCTATGGCTGGGACGCGCGCATGGCGCCGCTTGGCGCATTGCTGGGGCTGCCC GCATGA
Upstream 100 bases:
>100_bases CCGCAGGCGAAGCAATCTCCAGAAGGCGGCCTTGTGCGCGGTCGATGGCTGGAGATTGCCGCGTCGCCTTCGGCTCCTCA CAATGATGGAGTAGGGGGCG
Downstream 100 bases:
>100_bases CACGCTGGCAGCGCCATCTGGTCACGCTGGCCTTGCTGGCGGCGGTGATCCTCGCGCTCTTCTGGCGCGACGCCGCCGAC ATGGCGGGCATCTGGTGGAA
Product: glycosyl transferase, group 1
Products: NA
Alternate protein names: Glycosyltransferase; Glycosyl Transferase; Glycosyl Transferase Group 1 Family Protein; Sugar Transferase; Glycosyltransferase Group 1 Protein; Glycosyltransferase-Like Protein
Number of amino acids: Translated: 401; Mature: 400
Protein sequence:
>401_residues MPEILFLVHRAPWPPDRGDRIRSWHMFEALAKLAPVHVAALADNDADAALARAKLAPLCKSLAIEGRRVSRPIALAEAVL RREPVSIHLFRSKALARQVDALIGRGDISHIVAFSGQMAQYLPARFDGPVLMDFVDVDSAKFGAYAKQDRRQPLNWVHRR EARVLGAYEVGIARRVAASLFVSEAEAALFRQKSGLAADKVLAVGNGIDTDRFDPALPFDPVGHGDGPLAVFTGQMDYRP NIDAARWFAADILPLIRRRHPAARFAVVGRAPSAEVRALAKQPGVIVTGEVPDVRPWLAAADAVVAPLLLARGVQNKLLE AMAMARPVVASAAAATGIDAAPGEHLLVADDAAAMADAVCMLFGDRDAAAHMGQAARARMIARYGWDARMAPLGALLGLP A
Sequences:
>Translated_401_residues MPEILFLVHRAPWPPDRGDRIRSWHMFEALAKLAPVHVAALADNDADAALARAKLAPLCKSLAIEGRRVSRPIALAEAVL RREPVSIHLFRSKALARQVDALIGRGDISHIVAFSGQMAQYLPARFDGPVLMDFVDVDSAKFGAYAKQDRRQPLNWVHRR EARVLGAYEVGIARRVAASLFVSEAEAALFRQKSGLAADKVLAVGNGIDTDRFDPALPFDPVGHGDGPLAVFTGQMDYRP NIDAARWFAADILPLIRRRHPAARFAVVGRAPSAEVRALAKQPGVIVTGEVPDVRPWLAAADAVVAPLLLARGVQNKLLE AMAMARPVVASAAAATGIDAAPGEHLLVADDAAAMADAVCMLFGDRDAAAHMGQAARARMIARYGWDARMAPLGALLGLP A >Mature_400_residues PEILFLVHRAPWPPDRGDRIRSWHMFEALAKLAPVHVAALADNDADAALARAKLAPLCKSLAIEGRRVSRPIALAEAVLR REPVSIHLFRSKALARQVDALIGRGDISHIVAFSGQMAQYLPARFDGPVLMDFVDVDSAKFGAYAKQDRRQPLNWVHRRE ARVLGAYEVGIARRVAASLFVSEAEAALFRQKSGLAADKVLAVGNGIDTDRFDPALPFDPVGHGDGPLAVFTGQMDYRPN IDAARWFAADILPLIRRRHPAARFAVVGRAPSAEVRALAKQPGVIVTGEVPDVRPWLAAADAVVAPLLLARGVQNKLLEA MAMARPVVASAAAATGIDAAPGEHLLVADDAAAMADAVCMLFGDRDAAAHMGQAARARMIARYGWDARMAPLGALLGLPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42973; Mature: 42842
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEILFLVHRAPWPPDRGDRIRSWHMFEALAKLAPVHVAALADNDADAALARAKLAPLCK CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHH SLAIEGRRVSRPIALAEAVLRREPVSIHLFRSKALARQVDALIGRGDISHIVAFSGQMAQ HHHCCCCHHCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHH YLPARFDGPVLMDFVDVDSAKFGAYAKQDRRQPLNWVHRREARVLGAYEVGIARRVAASL HCCCCCCCCEEEEEEECCCCHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVSEAEAALFRQKSGLAADKVLAVGNGIDTDRFDPALPFDPVGHGDGPLAVFTGQMDYRP HHHHHHHHHHHHHCCCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC NIDAARWFAADILPLIRRRHPAARFAVVGRAPSAEVRALAKQPGVIVTGEVPDVRPWLAA CCCHHHHHHHHHHHHHHCCCCCHHEEEECCCCCHHHHHHHHCCCEEEECCCCCCCHHHHH ADAVVAPLLLARGVQNKLLEAMAMARPVVASAAAATGIDAAPGEHLLVADDAAAMADAVC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHH MLFGDRDAAAHMGQAARARMIARYGWDARMAPLGALLGLPA HHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC >Mature Secondary Structure PEILFLVHRAPWPPDRGDRIRSWHMFEALAKLAPVHVAALADNDADAALARAKLAPLCK CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHH SLAIEGRRVSRPIALAEAVLRREPVSIHLFRSKALARQVDALIGRGDISHIVAFSGQMAQ HHHCCCCHHCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHH YLPARFDGPVLMDFVDVDSAKFGAYAKQDRRQPLNWVHRREARVLGAYEVGIARRVAASL HCCCCCCCCEEEEEEECCCCHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVSEAEAALFRQKSGLAADKVLAVGNGIDTDRFDPALPFDPVGHGDGPLAVFTGQMDYRP HHHHHHHHHHHHHCCCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC NIDAARWFAADILPLIRRRHPAARFAVVGRAPSAEVRALAKQPGVIVTGEVPDVRPWLAA CCCHHHHHHHHHHHHHHCCCCCHHEEEECCCCCHHHHHHHHCCCEEEECCCCCCCHHHHH ADAVVAPLLLARGVQNKLLEAMAMARPVVASAAAATGIDAAPGEHLLVADDAAAMADAVC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHH MLFGDRDAAAHMGQAARARMIARYGWDARMAPLGALLGLPA HHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA