Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487404

Identifier: 103487404

GI number: 103487404

Start: 2023217

End: 2024695

Strand: Reverse

Name: 103487404

Synonym: Sala_1920

Alternate gene names: NA

Gene position: 2024695-2023217 (Counterclockwise)

Preceding gene: 103487405

Following gene: 103487403

Centisome position: 60.53

GC content: 70.45

Gene sequence:

>1479_bases
ATGACACGCTGGCAGCGCCATCTGGTCACGCTGGCCTTGCTGGCGGCGGTGATCCTCGCGCTCTTCTGGCGCGACGCCGC
CGACATGGCGGGCATCTGGTGGAACAGTTCGACCTTTACCCATTGCCTGCTGATGGTGCCGCTGATCGGCTGGCTGGTCG
CGCAGCGGATCGACCTGTTGCGCCCGCTGGCGCCGACCTTCTGGTGGCCCGCGTTGCTGTGGATGACGGGGGCGGGGTGC
GTCTGGCTCGTCGGCGAGGCGGCGGGGGTGGCGTTGTTCCGCCAGCTCGGCCTCGTGCTGATGCTCCAGGGCGCGGTGGG
CGTCGCGCTCGGCGAAAAGCTGGTGCGCGGGCTGCTCTTCCCGCTCGCCTATGCGCTGCTGCTCGTTCCCTTCGGCGAGG
AGCTGGTGCCGCTGCTCCAGACCTTTACCGCACATATCAGCGTCGCGCTGCTCCACCTGTCGGGCTTCGCTGCCGAGATG
CAGGGCGTGTTCATCACCACGCGCGCGGGTTTTTTCGAGGTGGCCGAGGAATGTTCGGGAGTCAATTTCCTGATCGCGAT
GCTCGCCTATGCCGCGTTCGCGGCGCATCTTTGCTTCAAGAGCTGGACGCGGCGGATCGTCTTTGTCGTCGCCGCGCTCG
CGACGACGATCCTGGCCAATGCGCTGCGCGCCTATGGGACGATGCTCGCGGCCGAGGTCTGGGGGATCGAGGCGGCGGGC
GGGATCGACCATATTGTCTATGGCTGGATCTTCTTCGGCCTCGTCATCCTGATCGTGATGCTGGCGGCGCGGCGCTGGTT
CGACCGGCCCGCGAACGACGCCGCCGTGGATGTGCGTGGGCTGGAGGGGCCGATCCGTTTTGCGGGGCCGGGCCGCGCGG
TGCTGCCCGCCGCCTTGCTCTTGCCGCTGCTGTTCGCCGCATGGGGTCTGCTCGTCGCCGGGCGCAGCGCGCCGTTGCCG
CCCACCATGGCGGTCGAGGCGCCGCCGGGCTGGCGCGAAGCGCGTGTCGGCGGCATCCCCTGGACGCCGCGCTTCGACGG
CGCCGACCAGCGGCTTTTGCGGCACTTTGCGAACGCGAAGGGGCAGGTCGTGACCGTCGCGATCGGCGGTTATGAGCGCC
AGGCCGAGGGGCGCGAGGTCGTCGCCTTCGGGCAGGGCGCGGTCGATCCCGACAGCCGATGGGCGTGGAGCGCGGCGCTG
CCCGCCGTCGATGGGGGCAAGACCGAACGCCTGCTGCACCCCGGCCCGGTGCTGCGCGACGCCGCGACCTGGTATGTCGT
CGGCGGCGACGTGACGGGCAGCGCGCGTTCGGCCAAGCTGGCGGGGCTGAAAGCGCGCCTTGCCGGCGGCGACCCGCGCG
CGCTGACGCTGATCGTGTCGAGCGAGACGGCGCAGGGCGGGCGCGATGCGATCAGGGATTTCGTTTCCGCGTCGGGCGGA
GCCAGGGCGATGGCTGACCGCGCGCTCAAAAGCCGCTAG

Upstream 100 bases:

>100_bases
CGGCGGCGCACATGGGACAGGCGGCACGCGCACGGATGATCGCGCGCTATGGCTGGGACGCGCGCATGGCGCCGCTTGGC
GCATTGCTGGGGCTGCCCGC

Downstream 100 bases:

>100_bases
GACCGACCCATGTGCGGCATCGCGGGCATCTATCATCTTGAGACCGCGAAACCGGTCGATCCGGCGCGGCTGCGCGCGAT
GCTCCAGCCGATGCAGCATC

Product: ABC transporter related

Products: NA

Alternate protein names: ABC Transporter

Number of amino acids: Translated: 492; Mature: 491

Protein sequence:

>492_residues
MTRWQRHLVTLALLAAVILALFWRDAADMAGIWWNSSTFTHCLLMVPLIGWLVAQRIDLLRPLAPTFWWPALLWMTGAGC
VWLVGEAAGVALFRQLGLVLMLQGAVGVALGEKLVRGLLFPLAYALLLVPFGEELVPLLQTFTAHISVALLHLSGFAAEM
QGVFITTRAGFFEVAEECSGVNFLIAMLAYAAFAAHLCFKSWTRRIVFVVAALATTILANALRAYGTMLAAEVWGIEAAG
GIDHIVYGWIFFGLVILIVMLAARRWFDRPANDAAVDVRGLEGPIRFAGPGRAVLPAALLLPLLFAAWGLLVAGRSAPLP
PTMAVEAPPGWREARVGGIPWTPRFDGADQRLLRHFANAKGQVVTVAIGGYERQAEGREVVAFGQGAVDPDSRWAWSAAL
PAVDGGKTERLLHPGPVLRDAATWYVVGGDVTGSARSAKLAGLKARLAGGDPRALTLIVSSETAQGGRDAIRDFVSASGG
ARAMADRALKSR

Sequences:

>Translated_492_residues
MTRWQRHLVTLALLAAVILALFWRDAADMAGIWWNSSTFTHCLLMVPLIGWLVAQRIDLLRPLAPTFWWPALLWMTGAGC
VWLVGEAAGVALFRQLGLVLMLQGAVGVALGEKLVRGLLFPLAYALLLVPFGEELVPLLQTFTAHISVALLHLSGFAAEM
QGVFITTRAGFFEVAEECSGVNFLIAMLAYAAFAAHLCFKSWTRRIVFVVAALATTILANALRAYGTMLAAEVWGIEAAG
GIDHIVYGWIFFGLVILIVMLAARRWFDRPANDAAVDVRGLEGPIRFAGPGRAVLPAALLLPLLFAAWGLLVAGRSAPLP
PTMAVEAPPGWREARVGGIPWTPRFDGADQRLLRHFANAKGQVVTVAIGGYERQAEGREVVAFGQGAVDPDSRWAWSAAL
PAVDGGKTERLLHPGPVLRDAATWYVVGGDVTGSARSAKLAGLKARLAGGDPRALTLIVSSETAQGGRDAIRDFVSASGG
ARAMADRALKSR
>Mature_491_residues
TRWQRHLVTLALLAAVILALFWRDAADMAGIWWNSSTFTHCLLMVPLIGWLVAQRIDLLRPLAPTFWWPALLWMTGAGCV
WLVGEAAGVALFRQLGLVLMLQGAVGVALGEKLVRGLLFPLAYALLLVPFGEELVPLLQTFTAHISVALLHLSGFAAEMQ
GVFITTRAGFFEVAEECSGVNFLIAMLAYAAFAAHLCFKSWTRRIVFVVAALATTILANALRAYGTMLAAEVWGIEAAGG
IDHIVYGWIFFGLVILIVMLAARRWFDRPANDAAVDVRGLEGPIRFAGPGRAVLPAALLLPLLFAAWGLLVAGRSAPLPP
TMAVEAPPGWREARVGGIPWTPRFDGADQRLLRHFANAKGQVVTVAIGGYERQAEGREVVAFGQGAVDPDSRWAWSAALP
AVDGGKTERLLHPGPVLRDAATWYVVGGDVTGSARSAKLAGLKARLAGGDPRALTLIVSSETAQGGRDAIRDFVSASGGA
RAMADRALKSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52710; Mature: 52579

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRWQRHLVTLALLAAVILALFWRDAADMAGIWWNSSTFTHCLLMVPLIGWLVAQRIDLL
CCHHHHHHHHHHHHHHHHHHHHHHCHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
RPLAPTFWWPALLWMTGAGCVWLVGEAAGVALFRQLGLVLMLQGAVGVALGEKLVRGLLF
HHCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLAYALLLVPFGEELVPLLQTFTAHISVALLHLSGFAAEMQGVFITTRAGFFEVAEECSG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHCC
VNFLIAMLAYAAFAAHLCFKSWTRRIVFVVAALATTILANALRAYGTMLAAEVWGIEAAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GIDHIVYGWIFFGLVILIVMLAARRWFDRPANDAAVDVRGLEGPIRFAGPGRAVLPAALL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCCCCHHHHHHHH
LPLLFAAWGLLVAGRSAPLPPTMAVEAPPGWREARVGGIPWTPRFDGADQRLLRHFANAK
HHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
GQVVTVAIGGYERQAEGREVVAFGQGAVDPDSRWAWSAALPAVDGGKTERLLHPGPVLRD
CCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHC
AATWYVVGGDVTGSARSAKLAGLKARLAGGDPRALTLIVSSETAQGGRDAIRDFVSASGG
CCEEEEEECCCCCCCCHHHHHHHHHEECCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCC
ARAMADRALKSR
HHHHHHHHHHCC
>Mature Secondary Structure 
TRWQRHLVTLALLAAVILALFWRDAADMAGIWWNSSTFTHCLLMVPLIGWLVAQRIDLL
CHHHHHHHHHHHHHHHHHHHHHHCHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
RPLAPTFWWPALLWMTGAGCVWLVGEAAGVALFRQLGLVLMLQGAVGVALGEKLVRGLLF
HHCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLAYALLLVPFGEELVPLLQTFTAHISVALLHLSGFAAEMQGVFITTRAGFFEVAEECSG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHCC
VNFLIAMLAYAAFAAHLCFKSWTRRIVFVVAALATTILANALRAYGTMLAAEVWGIEAAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GIDHIVYGWIFFGLVILIVMLAARRWFDRPANDAAVDVRGLEGPIRFAGPGRAVLPAALL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCCCCHHHHHHHH
LPLLFAAWGLLVAGRSAPLPPTMAVEAPPGWREARVGGIPWTPRFDGADQRLLRHFANAK
HHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
GQVVTVAIGGYERQAEGREVVAFGQGAVDPDSRWAWSAALPAVDGGKTERLLHPGPVLRD
CCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHC
AATWYVVGGDVTGSARSAKLAGLKARLAGGDPRALTLIVSSETAQGGRDAIRDFVSASGG
CCEEEEEECCCCCCCCHHHHHHHHHEECCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCC
ARAMADRALKSR
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA