| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487375
Identifier: 103487375
GI number: 103487375
Start: 1990521
End: 1991672
Strand: Reverse
Name: 103487375
Synonym: Sala_1891
Alternate gene names: NA
Gene position: 1991672-1990521 (Counterclockwise)
Preceding gene: 103487376
Following gene: 103487374
Centisome position: 59.54
GC content: 72.66
Gene sequence:
>1152_bases TTGCGCGGGCCTTTTCTGCGCGCTTGCTCGATTGCGATCCTGACCATCGCGCTCGCCTGGTTGGCGGGCGGGCAGGCGCT GCTCGGCCGGATCGATCCGGCGCTGGCGGTCCCGCTGCTGGCGCCGCCGATGCTGTTGCTCGCCTGGTGGCAGCGACGCG ATCCCGCATCCGCCCGGCGAATCACCACCCTGTTGGCGCTGGCATTGATTGCCGCGGTGCAGGCGGCGCTCGCCCTCGCG CTGGCCGGGGCGGCGGCGGCGCTTCAGTTGCTGCTGGTGGCGCTGACGGGCGGTGTTGCGGCGCTCATTGCCGATGCGCT GGTCCGGTGGCGCCCGTCGGTTCGCGCGCTGCCATGGCTTGCGGCCCTGCTTGTCGTCCCCGCCTGGTTTGGCGCGGGCC ACGCGCTGCTCGCCGTGCTCTATCGGCCTGCGGCCGCGCCTGTCGACACGCCCGCCGCGACAATGCTGACCGGCTTGCCC CTGCGCTGGCAGGGCGGCGAGAGCCTGACGTCGATGATCGCGGAGGGGTCGAATGACGATCCTGCGCTCGCGCGGCTCAA ACGTCTGGGGCCGGTGTTGCTCGTCGACAGTTTGACAGACCATGTGCCGCCGCCGGGCGGGACGCTGCTCATCGCGCACC CGCGCGCGCTCGCGCCGCGGGAACTGGTTGCGATCGACGCCTTTGTGCGCGGTGGCGGGCGCGCGGTCATCCTGGCCGAT GCCCTGTCGGGCTGGCCGCCGCGCCATCCGCTGGGCGATCCGCGCAATCCGCCGGTGACGAGCCTGCTGACGCCGCTTCT CGATCATTGGGGCATCGCGCTGGCCGCTGCGCCGGCCGAGGACGAAGCGGCGATCGCGGTCGACGTCGGGCACAGGCGGC TTCGCCTGTCGAGCGCCGGACGTTTCGGCGGGCTTCCTTCACCATGCCGGGCCTTTGTCGACAATCGTGTCGCCCATTGC CCGATCGGCAGGGGCGAGGCGTGGCTCGTCGGCGACGCGGACCTGCTGTTCGCTCCCTTGTGGCGCCCGCTCGCGCCCGG CGCCGAGCATCTGCGACAGGCTGATACCATGGAGTGGCTCGCGGCGCGGCTGTGGCCCGGCGCCGGGCAGGCGACGCTAC GCCCGATCTGGATTCGCGCGCGGGTCGGCTGA
Upstream 100 bases:
>100_bases TAAAGGTGCCGCAGGCCATGGCGCCGACGGCGACCGTTCCCGATCTCGAACCCGATCCCGAACTTCAGCGCGCGCGCCAG TCGGCGCCGTGACGGCAGGG
Downstream 100 bases:
>100_bases GTCGCACCTTTTTCCCCAAAAATGCCCGTGGCACCCCGTTTCACGCTGCATCCTTGCGCTGCAGGACCGTTATTTGCCCA ATTCGGACGGCATTTTGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 383; Mature: 383
Protein sequence:
>383_residues MRGPFLRACSIAILTIALAWLAGGQALLGRIDPALAVPLLAPPMLLLAWWQRRDPASARRITTLLALALIAAVQAALALA LAGAAAALQLLLVALTGGVAALIADALVRWRPSVRALPWLAALLVVPAWFGAGHALLAVLYRPAAAPVDTPAATMLTGLP LRWQGGESLTSMIAEGSNDDPALARLKRLGPVLLVDSLTDHVPPPGGTLLIAHPRALAPRELVAIDAFVRGGGRAVILAD ALSGWPPRHPLGDPRNPPVTSLLTPLLDHWGIALAAAPAEDEAAIAVDVGHRRLRLSSAGRFGGLPSPCRAFVDNRVAHC PIGRGEAWLVGDADLLFAPLWRPLAPGAEHLRQADTMEWLAARLWPGAGQATLRPIWIRARVG
Sequences:
>Translated_383_residues MRGPFLRACSIAILTIALAWLAGGQALLGRIDPALAVPLLAPPMLLLAWWQRRDPASARRITTLLALALIAAVQAALALA LAGAAAALQLLLVALTGGVAALIADALVRWRPSVRALPWLAALLVVPAWFGAGHALLAVLYRPAAAPVDTPAATMLTGLP LRWQGGESLTSMIAEGSNDDPALARLKRLGPVLLVDSLTDHVPPPGGTLLIAHPRALAPRELVAIDAFVRGGGRAVILAD ALSGWPPRHPLGDPRNPPVTSLLTPLLDHWGIALAAAPAEDEAAIAVDVGHRRLRLSSAGRFGGLPSPCRAFVDNRVAHC PIGRGEAWLVGDADLLFAPLWRPLAPGAEHLRQADTMEWLAARLWPGAGQATLRPIWIRARVG >Mature_383_residues MRGPFLRACSIAILTIALAWLAGGQALLGRIDPALAVPLLAPPMLLLAWWQRRDPASARRITTLLALALIAAVQAALALA LAGAAAALQLLLVALTGGVAALIADALVRWRPSVRALPWLAALLVVPAWFGAGHALLAVLYRPAAAPVDTPAATMLTGLP LRWQGGESLTSMIAEGSNDDPALARLKRLGPVLLVDSLTDHVPPPGGTLLIAHPRALAPRELVAIDAFVRGGGRAVILAD ALSGWPPRHPLGDPRNPPVTSLLTPLLDHWGIALAAAPAEDEAAIAVDVGHRRLRLSSAGRFGGLPSPCRAFVDNRVAHC PIGRGEAWLVGDADLLFAPLWRPLAPGAEHLRQADTMEWLAARLWPGAGQATLRPIWIRARVG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40203; Mature: 40203
Theoretical pI: Translated: 11.37; Mature: 11.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGPFLRACSIAILTIALAWLAGGQALLGRIDPALAVPLLAPPMLLLAWWQRRDPASARR CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH ITTLLALALIAAVQAALALALAGAAAALQLLLVALTGGVAALIADALVRWRPSVRALPWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHH AALLVVPAWFGAGHALLAVLYRPAAAPVDTPAATMLTGLPLRWQGGESLTSMIAEGSNDD HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCEECCCHHHHHHHHCCCCCC PALARLKRLGPVLLVDSLTDHVPPPGGTLLIAHPRALAPRELVAIDAFVRGGGRAVILAD HHHHHHHHCCCEEEEHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEE ALSGWPPRHPLGDPRNPPVTSLLTPLLDHWGIALAAAPAEDEAAIAVDVGHRRLRLSSAG CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCCCEEEECCCC RFGGLPSPCRAFVDNRVAHCPIGRGEAWLVGDADLLFAPLWRPLAPGAEHLRQADTMEWL CCCCCCHHHHHHHCCCCEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHH AARLWPGAGQATLRPIWIRARVG HHHHCCCCCCCCEEEEEEEEECC >Mature Secondary Structure MRGPFLRACSIAILTIALAWLAGGQALLGRIDPALAVPLLAPPMLLLAWWQRRDPASARR CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH ITTLLALALIAAVQAALALALAGAAAALQLLLVALTGGVAALIADALVRWRPSVRALPWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHH AALLVVPAWFGAGHALLAVLYRPAAAPVDTPAATMLTGLPLRWQGGESLTSMIAEGSNDD HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCEECCCHHHHHHHHCCCCCC PALARLKRLGPVLLVDSLTDHVPPPGGTLLIAHPRALAPRELVAIDAFVRGGGRAVILAD HHHHHHHHCCCEEEEHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEE ALSGWPPRHPLGDPRNPPVTSLLTPLLDHWGIALAAAPAEDEAAIAVDVGHRRLRLSSAG CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCCCEEEECCCC RFGGLPSPCRAFVDNRVAHCPIGRGEAWLVGDADLLFAPLWRPLAPGAEHLRQADTMEWL CCCCCCHHHHHHHCCCCEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHH AARLWPGAGQATLRPIWIRARVG HHHHCCCCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA