Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487375

Identifier: 103487375

GI number: 103487375

Start: 1990521

End: 1991672

Strand: Reverse

Name: 103487375

Synonym: Sala_1891

Alternate gene names: NA

Gene position: 1991672-1990521 (Counterclockwise)

Preceding gene: 103487376

Following gene: 103487374

Centisome position: 59.54

GC content: 72.66

Gene sequence:

>1152_bases
TTGCGCGGGCCTTTTCTGCGCGCTTGCTCGATTGCGATCCTGACCATCGCGCTCGCCTGGTTGGCGGGCGGGCAGGCGCT
GCTCGGCCGGATCGATCCGGCGCTGGCGGTCCCGCTGCTGGCGCCGCCGATGCTGTTGCTCGCCTGGTGGCAGCGACGCG
ATCCCGCATCCGCCCGGCGAATCACCACCCTGTTGGCGCTGGCATTGATTGCCGCGGTGCAGGCGGCGCTCGCCCTCGCG
CTGGCCGGGGCGGCGGCGGCGCTTCAGTTGCTGCTGGTGGCGCTGACGGGCGGTGTTGCGGCGCTCATTGCCGATGCGCT
GGTCCGGTGGCGCCCGTCGGTTCGCGCGCTGCCATGGCTTGCGGCCCTGCTTGTCGTCCCCGCCTGGTTTGGCGCGGGCC
ACGCGCTGCTCGCCGTGCTCTATCGGCCTGCGGCCGCGCCTGTCGACACGCCCGCCGCGACAATGCTGACCGGCTTGCCC
CTGCGCTGGCAGGGCGGCGAGAGCCTGACGTCGATGATCGCGGAGGGGTCGAATGACGATCCTGCGCTCGCGCGGCTCAA
ACGTCTGGGGCCGGTGTTGCTCGTCGACAGTTTGACAGACCATGTGCCGCCGCCGGGCGGGACGCTGCTCATCGCGCACC
CGCGCGCGCTCGCGCCGCGGGAACTGGTTGCGATCGACGCCTTTGTGCGCGGTGGCGGGCGCGCGGTCATCCTGGCCGAT
GCCCTGTCGGGCTGGCCGCCGCGCCATCCGCTGGGCGATCCGCGCAATCCGCCGGTGACGAGCCTGCTGACGCCGCTTCT
CGATCATTGGGGCATCGCGCTGGCCGCTGCGCCGGCCGAGGACGAAGCGGCGATCGCGGTCGACGTCGGGCACAGGCGGC
TTCGCCTGTCGAGCGCCGGACGTTTCGGCGGGCTTCCTTCACCATGCCGGGCCTTTGTCGACAATCGTGTCGCCCATTGC
CCGATCGGCAGGGGCGAGGCGTGGCTCGTCGGCGACGCGGACCTGCTGTTCGCTCCCTTGTGGCGCCCGCTCGCGCCCGG
CGCCGAGCATCTGCGACAGGCTGATACCATGGAGTGGCTCGCGGCGCGGCTGTGGCCCGGCGCCGGGCAGGCGACGCTAC
GCCCGATCTGGATTCGCGCGCGGGTCGGCTGA

Upstream 100 bases:

>100_bases
TAAAGGTGCCGCAGGCCATGGCGCCGACGGCGACCGTTCCCGATCTCGAACCCGATCCCGAACTTCAGCGCGCGCGCCAG
TCGGCGCCGTGACGGCAGGG

Downstream 100 bases:

>100_bases
GTCGCACCTTTTTCCCCAAAAATGCCCGTGGCACCCCGTTTCACGCTGCATCCTTGCGCTGCAGGACCGTTATTTGCCCA
ATTCGGACGGCATTTTGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MRGPFLRACSIAILTIALAWLAGGQALLGRIDPALAVPLLAPPMLLLAWWQRRDPASARRITTLLALALIAAVQAALALA
LAGAAAALQLLLVALTGGVAALIADALVRWRPSVRALPWLAALLVVPAWFGAGHALLAVLYRPAAAPVDTPAATMLTGLP
LRWQGGESLTSMIAEGSNDDPALARLKRLGPVLLVDSLTDHVPPPGGTLLIAHPRALAPRELVAIDAFVRGGGRAVILAD
ALSGWPPRHPLGDPRNPPVTSLLTPLLDHWGIALAAAPAEDEAAIAVDVGHRRLRLSSAGRFGGLPSPCRAFVDNRVAHC
PIGRGEAWLVGDADLLFAPLWRPLAPGAEHLRQADTMEWLAARLWPGAGQATLRPIWIRARVG

Sequences:

>Translated_383_residues
MRGPFLRACSIAILTIALAWLAGGQALLGRIDPALAVPLLAPPMLLLAWWQRRDPASARRITTLLALALIAAVQAALALA
LAGAAAALQLLLVALTGGVAALIADALVRWRPSVRALPWLAALLVVPAWFGAGHALLAVLYRPAAAPVDTPAATMLTGLP
LRWQGGESLTSMIAEGSNDDPALARLKRLGPVLLVDSLTDHVPPPGGTLLIAHPRALAPRELVAIDAFVRGGGRAVILAD
ALSGWPPRHPLGDPRNPPVTSLLTPLLDHWGIALAAAPAEDEAAIAVDVGHRRLRLSSAGRFGGLPSPCRAFVDNRVAHC
PIGRGEAWLVGDADLLFAPLWRPLAPGAEHLRQADTMEWLAARLWPGAGQATLRPIWIRARVG
>Mature_383_residues
MRGPFLRACSIAILTIALAWLAGGQALLGRIDPALAVPLLAPPMLLLAWWQRRDPASARRITTLLALALIAAVQAALALA
LAGAAAALQLLLVALTGGVAALIADALVRWRPSVRALPWLAALLVVPAWFGAGHALLAVLYRPAAAPVDTPAATMLTGLP
LRWQGGESLTSMIAEGSNDDPALARLKRLGPVLLVDSLTDHVPPPGGTLLIAHPRALAPRELVAIDAFVRGGGRAVILAD
ALSGWPPRHPLGDPRNPPVTSLLTPLLDHWGIALAAAPAEDEAAIAVDVGHRRLRLSSAGRFGGLPSPCRAFVDNRVAHC
PIGRGEAWLVGDADLLFAPLWRPLAPGAEHLRQADTMEWLAARLWPGAGQATLRPIWIRARVG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40203; Mature: 40203

Theoretical pI: Translated: 11.37; Mature: 11.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGPFLRACSIAILTIALAWLAGGQALLGRIDPALAVPLLAPPMLLLAWWQRRDPASARR
CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ITTLLALALIAAVQAALALALAGAAAALQLLLVALTGGVAALIADALVRWRPSVRALPWL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHH
AALLVVPAWFGAGHALLAVLYRPAAAPVDTPAATMLTGLPLRWQGGESLTSMIAEGSNDD
HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCEECCCHHHHHHHHCCCCCC
PALARLKRLGPVLLVDSLTDHVPPPGGTLLIAHPRALAPRELVAIDAFVRGGGRAVILAD
HHHHHHHHCCCEEEEHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEE
ALSGWPPRHPLGDPRNPPVTSLLTPLLDHWGIALAAAPAEDEAAIAVDVGHRRLRLSSAG
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCCCEEEECCCC
RFGGLPSPCRAFVDNRVAHCPIGRGEAWLVGDADLLFAPLWRPLAPGAEHLRQADTMEWL
CCCCCCHHHHHHHCCCCEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
AARLWPGAGQATLRPIWIRARVG
HHHHCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MRGPFLRACSIAILTIALAWLAGGQALLGRIDPALAVPLLAPPMLLLAWWQRRDPASARR
CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ITTLLALALIAAVQAALALALAGAAAALQLLLVALTGGVAALIADALVRWRPSVRALPWL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHH
AALLVVPAWFGAGHALLAVLYRPAAAPVDTPAATMLTGLPLRWQGGESLTSMIAEGSNDD
HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCEECCCHHHHHHHHCCCCCC
PALARLKRLGPVLLVDSLTDHVPPPGGTLLIAHPRALAPRELVAIDAFVRGGGRAVILAD
HHHHHHHHCCCEEEEHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEE
ALSGWPPRHPLGDPRNPPVTSLLTPLLDHWGIALAAAPAEDEAAIAVDVGHRRLRLSSAG
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCCCEEEECCCC
RFGGLPSPCRAFVDNRVAHCPIGRGEAWLVGDADLLFAPLWRPLAPGAEHLRQADTMEWL
CCCCCCHHHHHHHCCCCEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
AARLWPGAGQATLRPIWIRARVG
HHHHCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA