Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487353

Identifier: 103487353

GI number: 103487353

Start: 1965381

End: 1966205

Strand: Reverse

Name: 103487353

Synonym: Sala_1869

Alternate gene names: NA

Gene position: 1966205-1965381 (Counterclockwise)

Preceding gene: 103487354

Following gene: 103487352

Centisome position: 58.78

GC content: 66.3

Gene sequence:

>825_bases
ATGATGACCGCAGCCGATCCCGCGCTGGCCAAGTGCCGCCTGATGGTGGCGACGCCCATTTATGAGGGCGCACAGGGCAC
CTATGTCCGCGCCGCGCTCGATCTGGCGCTGCGCGCGCAGGCGATGGGCGTGCCGGTGCGGTTCGAGTTCATCCTGTATC
AGCCGTCGATCACCCGCGCGCGCAACATGCTGGCCGCGATGTTCCTCGCGAGCGACTGCACCCACCTGCTGTTCGTCGAT
GCCGACATCGATTTTTCGGTCGACGATGTCTTCTCGCTGGTCCGCGCGATGGACGCGCACGCCGAAGTCGGCGTCCTCGG
TGGCCCCTGTCCGCGGCGGATGATCAACTGGCGCAACGTCGCACGCGCGGTCGAGCAGGGGCTGGCAAAGGACAACCCCG
CCGATCTTGCGCGTTATTCGGGGGATTATGCGCTGCATTTCCTGAACCCGCGGCAAAGCTTCAAGATGACCGACCTGGTC
GAGCTGGCGCGGCTCGGCACCGCGATGATGCTGATCCGCCGCGAGGTGCTCGAAGCGATGCGCACCGCCTTGCCCGATCT
CGTCTTTCGCCCCGATCCCGCCGAGCGGCAGGCGCATGGCGTCGGCGAACGCGAGCCCGCCTTTTTCTGCCCGATGATCG
AGCCCGAAAGCGAGGCGCTGCTGTCCGACGACTATGCCTTTTGCCGCCGCGTGCGCGACGCGGGCTTTCGCATCTGGCTC
GCGCCGTGGGTCCGCACCACCCATGCGGGGCCGATGGTCTTCGCCGGTGCGCTTGCCGACACGGCGCAGCTTTATTCTGT
CAATCCAGACTCTTCTGTGGAGTAG

Upstream 100 bases:

>100_bases
AAGAGCCAGCTCGACGCCCTGATGGACGCAAAGGCCTACAAGGCTTTCTGCGACGCCCTCTAACCGACCGCCCCGCCCGC
GGACGGGAGGGGGAAGGGAC

Downstream 100 bases:

>100_bases
TTCATGCGTTATCTCCCGCTCACTCCCGATGACCGCGCAGCGATGCTGGGGGCCATCGGTGCGTCGTCGATCGACGAACT
GTTCGCCGATGTCCCCGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MMTAADPALAKCRLMVATPIYEGAQGTYVRAALDLALRAQAMGVPVRFEFILYQPSITRARNMLAAMFLASDCTHLLFVD
ADIDFSVDDVFSLVRAMDAHAEVGVLGGPCPRRMINWRNVARAVEQGLAKDNPADLARYSGDYALHFLNPRQSFKMTDLV
ELARLGTAMMLIRREVLEAMRTALPDLVFRPDPAERQAHGVGEREPAFFCPMIEPESEALLSDDYAFCRRVRDAGFRIWL
APWVRTTHAGPMVFAGALADTAQLYSVNPDSSVE

Sequences:

>Translated_274_residues
MMTAADPALAKCRLMVATPIYEGAQGTYVRAALDLALRAQAMGVPVRFEFILYQPSITRARNMLAAMFLASDCTHLLFVD
ADIDFSVDDVFSLVRAMDAHAEVGVLGGPCPRRMINWRNVARAVEQGLAKDNPADLARYSGDYALHFLNPRQSFKMTDLV
ELARLGTAMMLIRREVLEAMRTALPDLVFRPDPAERQAHGVGEREPAFFCPMIEPESEALLSDDYAFCRRVRDAGFRIWL
APWVRTTHAGPMVFAGALADTAQLYSVNPDSSVE
>Mature_274_residues
MMTAADPALAKCRLMVATPIYEGAQGTYVRAALDLALRAQAMGVPVRFEFILYQPSITRARNMLAAMFLASDCTHLLFVD
ADIDFSVDDVFSLVRAMDAHAEVGVLGGPCPRRMINWRNVARAVEQGLAKDNPADLARYSGDYALHFLNPRQSFKMTDLV
ELARLGTAMMLIRREVLEAMRTALPDLVFRPDPAERQAHGVGEREPAFFCPMIEPESEALLSDDYAFCRRVRDAGFRIWL
APWVRTTHAGPMVFAGALADTAQLYSVNPDSSVE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30387; Mature: 30387

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTAADPALAKCRLMVATPIYEGAQGTYVRAALDLALRAQAMGVPVRFEFILYQPSITRA
CCCCCCCHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHH
RNMLAAMFLASDCTHLLFVDADIDFSVDDVFSLVRAMDAHAEVGVLGGPCPRRMINWRNV
HHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
ARAVEQGLAKDNPADLARYSGDYALHFLNPRQSFKMTDLVELARLGTAMMLIRREVLEAM
HHHHHHCCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RTALPDLVFRPDPAERQAHGVGEREPAFFCPMIEPESEALLSDDYAFCRRVRDAGFRIWL
HHHCCHHEECCCCHHHHHCCCCCCCCCEECCCCCCCCHHHHCCHHHHHHHHHHCCCEEEE
APWVRTTHAGPMVFAGALADTAQLYSVNPDSSVE
ECHHHHCCCCHHHHHHHHHCCHHEEEECCCCCCC
>Mature Secondary Structure
MMTAADPALAKCRLMVATPIYEGAQGTYVRAALDLALRAQAMGVPVRFEFILYQPSITRA
CCCCCCCHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHH
RNMLAAMFLASDCTHLLFVDADIDFSVDDVFSLVRAMDAHAEVGVLGGPCPRRMINWRNV
HHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
ARAVEQGLAKDNPADLARYSGDYALHFLNPRQSFKMTDLVELARLGTAMMLIRREVLEAM
HHHHHHCCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RTALPDLVFRPDPAERQAHGVGEREPAFFCPMIEPESEALLSDDYAFCRRVRDAGFRIWL
HHHCCHHEECCCCHHHHHCCCCCCCCCEECCCCCCCCHHHHCCHHHHHHHHHHCCCEEEE
APWVRTTHAGPMVFAGALADTAQLYSVNPDSSVE
ECHHHHCCCCHHHHHHHHHCCHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA