Click here to switch to the map view.

The map label for this gene is xerC [H]

Identifier: 103487281

GI number: 103487281

Start: 1892986

End: 1893897

Strand: Reverse

Name: xerC [H]

Synonym: Sala_1797

Alternate gene names: 103487281

Gene position: 1893897-1892986 (Counterclockwise)

Preceding gene: 103487282

Following gene: 103487280

Centisome position: 56.62

GC content: 67.98

Gene sequence:

>912_bases
GTGTCTGACGCGGCCTCAATAGACCGCTTTCTGGAGATGATGGCGGCCGAGCGCGGTGCTTCCCGCAACACGCTCACTGC
CTATCGCCGCGATCTGGAGCAGGCGGCCGAGCGGGTCAAAGGGCCGCTGGGTGCGGCCGATGCGGCGGCGCTGCGCCAAT
TGATGGCCGATTATCGCTCGCTGTCCGCGAGCAGCGCGGCGCGCAAGCTGTCGGCGCTGCGACAATTTTTTGCCTTCCTC
CTCGACGAAGGCGAACGCGCGGACAATCCGGCGCTCGACATCGCGCGTCCGGCGACGCGGCGCCCATTGCCGCGCATTCT
GACTCACGACGAGATCCGGCGTTTGTTCGAACAGGCGGTCGCCGAAGCCGAAGGCGAAGCGCCGCCCGCGGGTGCGGTGC
GGATGCTGCTGCTCCTCGAACTCCTTTATGGATCGGGGCTGCGCGCGACCGAGCTGGTGTCGCTGCCGCGGCGCGCGGTG
CTTCGCGAGCGCGAATATCTGATCGTCCGCGGCAAGGGCGACAAGGAACGTCTGGTGCCGCTTTCGGCCCGCGCACGCGC
GGCGTTCGATCGCTGGCTGCCGCTGCTCGCCGACGGATCGCCATGGCTTTTCCCCTCCGGCAAGGCGCATATCTCGCGGG
TGCGGCTGTTTCAGATGCTGCGCGATCTTGCGGCGCGCGCAGGCGTCGATCCGGCTGCGGTCAGCCCGCACGTCCTGCGC
CACGCCTTTGCGACACACCTGCTCGAAGGCGGGGCCGACCTGCGCGCGCTGCAACTCATGCTCGGCCATGCCGACATTGC
AACGACCGAGATTTACACGCATGTCGACAGCCGCCGCCTCGTCGAACTGGTCAACCGGCGGCACCCGCTGGCGCATATGG
ATGACGTTGACCTGACGGCGCCTTCGGCCTAG

Upstream 100 bases:

>100_bases
TCGAAGGTGCCGCCCTATCACCTCTATAATATCGTCCGCGCGCTGCGCGAGGTGGGGCTCGCCGCCGAAGCGCGGATGAT
CGCCGCTGAAGCGCTGGTGC

Downstream 100 bases:

>100_bases
CGACGGCGCATGACAGCCTTTCTGGACTTCGAAAAACAGGTCGCCGCACTCGATCGACAGATTGCCGAACTGCGCGAAAT
GGGGGATGATCCCACGCTCG

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MSDAASIDRFLEMMAAERGASRNTLTAYRRDLEQAAERVKGPLGAADAAALRQLMADYRSLSASSAARKLSALRQFFAFL
LDEGERADNPALDIARPATRRPLPRILTHDEIRRLFEQAVAEAEGEAPPAGAVRMLLLLELLYGSGLRATELVSLPRRAV
LREREYLIVRGKGDKERLVPLSARARAAFDRWLPLLADGSPWLFPSGKAHISRVRLFQMLRDLAARAGVDPAAVSPHVLR
HAFATHLLEGGADLRALQLMLGHADIATTEIYTHVDSRRLVELVNRRHPLAHMDDVDLTAPSA

Sequences:

>Translated_303_residues
MSDAASIDRFLEMMAAERGASRNTLTAYRRDLEQAAERVKGPLGAADAAALRQLMADYRSLSASSAARKLSALRQFFAFL
LDEGERADNPALDIARPATRRPLPRILTHDEIRRLFEQAVAEAEGEAPPAGAVRMLLLLELLYGSGLRATELVSLPRRAV
LREREYLIVRGKGDKERLVPLSARARAAFDRWLPLLADGSPWLFPSGKAHISRVRLFQMLRDLAARAGVDPAAVSPHVLR
HAFATHLLEGGADLRALQLMLGHADIATTEIYTHVDSRRLVELVNRRHPLAHMDDVDLTAPSA
>Mature_302_residues
SDAASIDRFLEMMAAERGASRNTLTAYRRDLEQAAERVKGPLGAADAAALRQLMADYRSLSASSAARKLSALRQFFAFLL
DEGERADNPALDIARPATRRPLPRILTHDEIRRLFEQAVAEAEGEAPPAGAVRMLLLLELLYGSGLRATELVSLPRRAVL
REREYLIVRGKGDKERLVPLSARARAAFDRWLPLLADGSPWLFPSGKAHISRVRLFQMLRDLAARAGVDPAAVSPHVLRH
AFATHLLEGGADLRALQLMLGHADIATTEIYTHVDSRRLVELVNRRHPLAHMDDVDLTAPSA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=305, Percent_Identity=38.6885245901639, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1790244, Length=296, Percent_Identity=35.8108108108108, Blast_Score=150, Evalue=9e-38,
Organism=Escherichia coli, GI1790768, Length=192, Percent_Identity=31.25, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33438; Mature: 33307

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDAASIDRFLEMMAAERGASRNTLTAYRRDLEQAAERVKGPLGAADAAALRQLMADYRS
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LSASSAARKLSALRQFFAFLLDEGERADNPALDIARPATRRPLPRILTHDEIRRLFEQAV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHH
AEAEGEAPPAGAVRMLLLLELLYGSGLRATELVSLPRRAVLREREYLIVRGKGDKERLVP
HHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCC
LSARARAAFDRWLPLLADGSPWLFPSGKAHISRVRLFQMLRDLAARAGVDPAAVSPHVLR
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
HAFATHLLEGGADLRALQLMLGHADIATTEIYTHVDSRRLVELVNRRHPLAHMDDVDLTA
HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PSA
CCC
>Mature Secondary Structure 
SDAASIDRFLEMMAAERGASRNTLTAYRRDLEQAAERVKGPLGAADAAALRQLMADYRS
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LSASSAARKLSALRQFFAFLLDEGERADNPALDIARPATRRPLPRILTHDEIRRLFEQAV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHH
AEAEGEAPPAGAVRMLLLLELLYGSGLRATELVSLPRRAVLREREYLIVRGKGDKERLVP
HHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCC
LSARARAAFDRWLPLLADGSPWLFPSGKAHISRVRLFQMLRDLAARAGVDPAAVSPHVLR
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
HAFATHLLEGGADLRALQLMLGHADIATTEIYTHVDSRRLVELVNRRHPLAHMDDVDLTA
HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PSA
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA