Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487282

Identifier: 103487282

GI number: 103487282

Start: 1893890

End: 1895677

Strand: Reverse

Name: 103487282

Synonym: Sala_1798

Alternate gene names: NA

Gene position: 1895677-1893890 (Counterclockwise)

Preceding gene: 103487285

Following gene: 103487281

Centisome position: 56.67

GC content: 72.09

Gene sequence:

>1788_bases
ATGAAGCGAACGACCCTGTCCCTGGCGCTGGGCCTGTCGGCGGCGGTGCTGGTGCTGCCGGCGATCGCGCAGGAATCGCT
GTTGCCCGAAGGGTTCGGCAATCCCGCCGACACACCCGCGCCGCGTCCCGCCCCGACGCCCGCGCCGTCGCCGACGCCGG
GGCCGCCCGTGAATGGCAGCGCGCCGCCCGTGGTCGTCCCGACGGTCGGCAGCGCCGACAGCGATGCCGACGATGATGAG
GAAGCAGGTGACGAAGAGGTCGAATCGGGCGGGCTGAAATATGACCTGCCCCCCGGCGCGCGCCGCCTGCTGACGCGCAT
CGGACCGCTGACCCCCGCAACCGGCGGGATGGCGCCCGACGCCTTTGGGGTGCGCGGCCAATATGCCGCGGCGATCATGC
GGAAGACGAATGGCCAGTTCGCGTCGCGCTGGGGGCAGATACTGCTCCGCCGCGCGCTGGCCTCGGCAATCGACACACCC
GCGACGATCAACGGCGCCGACCTGGCCGCCGAGCGCGCGTCGCTGCTGCTCCGCATGGGCGAATCGACGGCGGCGCGGCG
GATCGTCCAGTCGGTCGATTACGACCGCGCCACCCCCCGTCTCGTCGCCGCGGCACAACAGGTCTATCTGGCCACTGCCG
ACCCGGCGGGACTCTGCCCCTATGTGCCTGCGGGCCTGGCGCATGGCGACGAGCATAGCTGGCGGCTTGCGTCGGCGATC
TGTTCGGGGCTGTCGGGCGAGGCGGGGCCGGCAGGCTGGGCGATCGGGCGCGTGCGGTCGAGCGGCAGGCTGTCGAACTT
CGACATCCTGCTCACTGAGCGCGTACTCGGCGCGACGGGCGCCGGGCGGCGGTCGACGACGATCGAATGGGACAATGTCG
ACCGGCTGACGAGCTGGCGCTTCGGCATGGCGACCGCGACGGCGATTCCGGTGCCCGATGCGCTGCGCGCCGCGGCGCCC
GCCTATATGAAGGGCTGGACCGTCCTCGCGCCGATGACCGACATTGCGCAGCGCGTTGCCGCGGCGCCGGAAGCGGCAGC
GCGCGGCGTGCTGTCGAGCGACGCTTATGTGTCGCTGTTGAGCGCAGCCGCGGGCGAGGAGGAGCCGAGCGAGGCACTGA
CCGCACAGACCGTCCAGCTGCGCACCGCGTTCAGCGCGGCGGCCGGTGCCGATCGTTATGCGGCGATGGAGGAACTTTGG
AGCGCGGCGAGGACGCCCGCGGAGGCCTATGCGGCGATGATCGCGACCGCGCGCGCGGCCGCGGCGCTTCCCCCCGGCAC
CGATGTCGGCGGCGATCCGTGGCAGCTCCTCGGTTCGATGCTCGCAGCGGGCTATGATGCCAACGCGCTGGCGTGGGCGT
CCAATGTGACGCCGGGAAGCCATGCCTGGGGAGTCCTTGCGGTCGGCTCGCCGCGCGCGCTGAACGGCCTGAGCGCGAGC
ACCGTCGAGCGTTTTTCGAACGCGGACGACAGCGCCGCTTCTCTGCGGTCGAAGTTCCTGCTTGCGGGGCTTGCCGGGCT
CGGACGCCTCGATGCCGCCGCCGCCGCCGCGGCGGCGCGCGATCTCGACGTCGATCTGGGACGGCAGACGCGCTGGACGC
GAGCGATCGCAGCGGCGGCCGAGCGCCGGGAGCCCGGAATGGTCGCCTTGCTCGCGGCAGCCGGGATGCAGGGCGACTGG
TCGAAGGTGCCGCCCTATCACCTCTATAATATCGTCCGCGCGCTGCGCGAGGTGGGGCTCGCCGCCGAAGCGCGGATGAT
CGCCGCTGAAGCGCTGGTGCGTGTCTGA

Upstream 100 bases:

>100_bases
TTTTGCTGCGAGCCAAACGGGATGAACCAAGCCCGCGCGATATTCCGCGCCGGTCGATCGAGGTGGATGTGAACGACAAG
ATGGCCGAAAGCCCGCTGCC

Downstream 100 bases:

>100_bases
CGCGGCCTCAATAGACCGCTTTCTGGAGATGATGGCGGCCGAGCGCGGTGCTTCCCGCAACACGCTCACTGCCTATCGCC
GCGATCTGGAGCAGGCGGCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 595; Mature: 595

Protein sequence:

>595_residues
MKRTTLSLALGLSAAVLVLPAIAQESLLPEGFGNPADTPAPRPAPTPAPSPTPGPPVNGSAPPVVVPTVGSADSDADDDE
EAGDEEVESGGLKYDLPPGARRLLTRIGPLTPATGGMAPDAFGVRGQYAAAIMRKTNGQFASRWGQILLRRALASAIDTP
ATINGADLAAERASLLLRMGESTAARRIVQSVDYDRATPRLVAAAQQVYLATADPAGLCPYVPAGLAHGDEHSWRLASAI
CSGLSGEAGPAGWAIGRVRSSGRLSNFDILLTERVLGATGAGRRSTTIEWDNVDRLTSWRFGMATATAIPVPDALRAAAP
AYMKGWTVLAPMTDIAQRVAAAPEAAARGVLSSDAYVSLLSAAAGEEEPSEALTAQTVQLRTAFSAAAGADRYAAMEELW
SAARTPAEAYAAMIATARAAAALPPGTDVGGDPWQLLGSMLAAGYDANALAWASNVTPGSHAWGVLAVGSPRALNGLSAS
TVERFSNADDSAASLRSKFLLAGLAGLGRLDAAAAAAAARDLDVDLGRQTRWTRAIAAAAERREPGMVALLAAAGMQGDW
SKVPPYHLYNIVRALREVGLAAEARMIAAEALVRV

Sequences:

>Translated_595_residues
MKRTTLSLALGLSAAVLVLPAIAQESLLPEGFGNPADTPAPRPAPTPAPSPTPGPPVNGSAPPVVVPTVGSADSDADDDE
EAGDEEVESGGLKYDLPPGARRLLTRIGPLTPATGGMAPDAFGVRGQYAAAIMRKTNGQFASRWGQILLRRALASAIDTP
ATINGADLAAERASLLLRMGESTAARRIVQSVDYDRATPRLVAAAQQVYLATADPAGLCPYVPAGLAHGDEHSWRLASAI
CSGLSGEAGPAGWAIGRVRSSGRLSNFDILLTERVLGATGAGRRSTTIEWDNVDRLTSWRFGMATATAIPVPDALRAAAP
AYMKGWTVLAPMTDIAQRVAAAPEAAARGVLSSDAYVSLLSAAAGEEEPSEALTAQTVQLRTAFSAAAGADRYAAMEELW
SAARTPAEAYAAMIATARAAAALPPGTDVGGDPWQLLGSMLAAGYDANALAWASNVTPGSHAWGVLAVGSPRALNGLSAS
TVERFSNADDSAASLRSKFLLAGLAGLGRLDAAAAAAAARDLDVDLGRQTRWTRAIAAAAERREPGMVALLAAAGMQGDW
SKVPPYHLYNIVRALREVGLAAEARMIAAEALVRV
>Mature_595_residues
MKRTTLSLALGLSAAVLVLPAIAQESLLPEGFGNPADTPAPRPAPTPAPSPTPGPPVNGSAPPVVVPTVGSADSDADDDE
EAGDEEVESGGLKYDLPPGARRLLTRIGPLTPATGGMAPDAFGVRGQYAAAIMRKTNGQFASRWGQILLRRALASAIDTP
ATINGADLAAERASLLLRMGESTAARRIVQSVDYDRATPRLVAAAQQVYLATADPAGLCPYVPAGLAHGDEHSWRLASAI
CSGLSGEAGPAGWAIGRVRSSGRLSNFDILLTERVLGATGAGRRSTTIEWDNVDRLTSWRFGMATATAIPVPDALRAAAP
AYMKGWTVLAPMTDIAQRVAAAPEAAARGVLSSDAYVSLLSAAAGEEEPSEALTAQTVQLRTAFSAAAGADRYAAMEELW
SAARTPAEAYAAMIATARAAAALPPGTDVGGDPWQLLGSMLAAGYDANALAWASNVTPGSHAWGVLAVGSPRALNGLSAS
TVERFSNADDSAASLRSKFLLAGLAGLGRLDAAAAAAAARDLDVDLGRQTRWTRAIAAAAERREPGMVALLAAAGMQGDW
SKVPPYHLYNIVRALREVGLAAEARMIAAEALVRV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61239; Mature: 61239

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTTLSLALGLSAAVLVLPAIAQESLLPEGFGNPADTPAPRPAPTPAPSPTPGPPVNGS
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APPVVVPTVGSADSDADDDEEAGDEEVESGGLKYDLPPGARRLLTRIGPLTPATGGMAPD
CCCEEEECCCCCCCCCCCCHHCCCHHHHCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCC
AFGVRGQYAAAIMRKTNGQFASRWGQILLRRALASAIDTPATINGADLAAERASLLLRMG
CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
ESTAARRIVQSVDYDRATPRLVAAAQQVYLATADPAGLCPYVPAGLAHGDEHSWRLASAI
CHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH
CSGLSGEAGPAGWAIGRVRSSGRLSNFDILLTERVLGATGAGRRSTTIEWDNVDRLTSWR
HCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHCCCCCCCCCCEEECCCCHHHHHHH
FGMATATAIPVPDALRAAAPAYMKGWTVLAPMTDIAQRVAAAPEAAARGVLSSDAYVSLL
HCHHHHCCCCCCHHHHHHCCHHHCCCEEECCHHHHHHHHHCCCHHHHHCCCCCHHHHHHH
SAAAGEEEPSEALTAQTVQLRTAFSAAAGADRYAAMEELWSAARTPAEAYAAMIATARAA
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AALPPGTDVGGDPWQLLGSMLAAGYDANALAWASNVTPGSHAWGVLAVGSPRALNGLSAS
HCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEECCCHHCCCCCHH
TVERFSNADDSAASLRSKFLLAGLAGLGRLDAAAAAAAARDLDVDLGRQTRWTRAIAAAA
HHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
ERREPGMVALLAAAGMQGDWSKVPPYHLYNIVRALREVGLAAEARMIAAEALVRV
HHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKRTTLSLALGLSAAVLVLPAIAQESLLPEGFGNPADTPAPRPAPTPAPSPTPGPPVNGS
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APPVVVPTVGSADSDADDDEEAGDEEVESGGLKYDLPPGARRLLTRIGPLTPATGGMAPD
CCCEEEECCCCCCCCCCCCHHCCCHHHHCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCC
AFGVRGQYAAAIMRKTNGQFASRWGQILLRRALASAIDTPATINGADLAAERASLLLRMG
CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
ESTAARRIVQSVDYDRATPRLVAAAQQVYLATADPAGLCPYVPAGLAHGDEHSWRLASAI
CHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH
CSGLSGEAGPAGWAIGRVRSSGRLSNFDILLTERVLGATGAGRRSTTIEWDNVDRLTSWR
HCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHCCCCCCCCCCEEECCCCHHHHHHH
FGMATATAIPVPDALRAAAPAYMKGWTVLAPMTDIAQRVAAAPEAAARGVLSSDAYVSLL
HCHHHHCCCCCCHHHHHHCCHHHCCCEEECCHHHHHHHHHCCCHHHHHCCCCCHHHHHHH
SAAAGEEEPSEALTAQTVQLRTAFSAAAGADRYAAMEELWSAARTPAEAYAAMIATARAA
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AALPPGTDVGGDPWQLLGSMLAAGYDANALAWASNVTPGSHAWGVLAVGSPRALNGLSAS
HCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEECCCHHCCCCCHH
TVERFSNADDSAASLRSKFLLAGLAGLGRLDAAAAAAAARDLDVDLGRQTRWTRAIAAAA
HHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
ERREPGMVALLAAAGMQGDWSKVPPYHLYNIVRALREVGLAAEARMIAAEALVRV
HHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA