Click here to switch to the map view.

The map label for this gene is secF [H]

Identifier: 103487198

GI number: 103487198

Start: 1803090

End: 1804073

Strand: Reverse

Name: secF [H]

Synonym: Sala_1713

Alternate gene names: 103487198

Gene position: 1804073-1803090 (Counterclockwise)

Preceding gene: 103487199

Following gene: 103487195

Centisome position: 53.93

GC content: 62.6

Gene sequence:

>984_bases
ATGCGTTTGCTGAAACTCGTCCCCGACGACACCAATATCCAGTTCCTGAAGTGGCGCAACGTAGCCATGGCGATCAGCTT
GCTGATGATCGTCGCGTCGATCGCGCTTGTCGCGGTGCGCGGCCTGAATCTTGGCGTCGACTTTGTCGGCGGCCAGTCGG
TGCGCGTCGAGTTCACCGGGGCGATGCCGCCGATCGACGAGATCCGCGAAAAGGTCGGCGCCATCGGCCTCGGCGAAGCG
ACGATCCAGCAGTTCGGATCGGACAAGGCGGTGTCGATCCGCACCGCGCTGCCCGAAGGCGACAAGGCGGCTGCCGAACG
CGCCGGGCAACGGCTGGTCGCGGGCATTGCCGACGCCTTTCCCACCGCGAAGACCGGATCGGTCGAAACCGTGTCGGGCA
AGGTGTCGGAGGAACTGCTGCGCACCGGGGCGCTCAGCCTGATCCTCGCGATGATCGCCATCTCCATCTATATCTGGATC
CGCTTCGAATGGCAGTTCGGCGTCGGTGCGCTGTTCGCGCTGTTCCACGACGTCACGCTGACCTTTGGCTTCTTTGCGCT
GACGCAGATGCAGTTTGACCTCAACATCGTCGCCGCGCTGCTCACCATCATCGGTTATTCGCTCAACGACACGATTGTCG
TGTTCGACCGGATTCGCGAAAATCTGAAGAAATATCGCAAGATGGAGATCATCCCGCTGCTCGACCTCAGCGTCAACGAA
ACGCTGGCGCGCACCGTGATGACCAGCTTCACCATGCTGATCGCGCTGGCGGTGCTGCTGTGGGTCGGGCCCGACGTGAT
CTTCGGCTTCACCGCGGCGATGCTGCTCGGCATCTTTGTCGGCACCTATTCGTCGGTCTATATGTCGGCGCCGATCCTCG
TGTGGCTGAAAGTCGGTCCCCACAGCTTCGTGCCGCGCACCACGGCGGTGACCGAAGGCGCCGAGCGGGTGTCGAACAGG
AACGACGACGGCGCGGTGGTTTGA

Upstream 100 bases:

>100_bases
AGTGTGTTCACCGCCGTCACCGTGACGCGCCTGTTCGCCGCGCGCTGGTTGCACAAGACGCGCCCTGCGTCGCTGAACAT
TTGAAGGTAAGGGATCGACC

Downstream 100 bases:

>100_bases
CGGGGCCGGCGGGCGTCGGCTTTGGGGTGGGGAGCGGACGCTGGCCTTAGTGTTGCACCCCGGCGAAAGCCGGGGCCCAA
GGCGCCCATAAGCAAGCGTT

Product: SecF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MRLLKLVPDDTNIQFLKWRNVAMAISLLMIVASIALVAVRGLNLGVDFVGGQSVRVEFTGAMPPIDEIREKVGAIGLGEA
TIQQFGSDKAVSIRTALPEGDKAAAERAGQRLVAGIADAFPTAKTGSVETVSGKVSEELLRTGALSLILAMIAISIYIWI
RFEWQFGVGALFALFHDVTLTFGFFALTQMQFDLNIVAALLTIIGYSLNDTIVVFDRIRENLKKYRKMEIIPLLDLSVNE
TLARTVMTSFTMLIALAVLLWVGPDVIFGFTAAMLLGIFVGTYSSVYMSAPILVWLKVGPHSFVPRTTAVTEGAERVSNR
NDDGAVV

Sequences:

>Translated_327_residues
MRLLKLVPDDTNIQFLKWRNVAMAISLLMIVASIALVAVRGLNLGVDFVGGQSVRVEFTGAMPPIDEIREKVGAIGLGEA
TIQQFGSDKAVSIRTALPEGDKAAAERAGQRLVAGIADAFPTAKTGSVETVSGKVSEELLRTGALSLILAMIAISIYIWI
RFEWQFGVGALFALFHDVTLTFGFFALTQMQFDLNIVAALLTIIGYSLNDTIVVFDRIRENLKKYRKMEIIPLLDLSVNE
TLARTVMTSFTMLIALAVLLWVGPDVIFGFTAAMLLGIFVGTYSSVYMSAPILVWLKVGPHSFVPRTTAVTEGAERVSNR
NDDGAVV
>Mature_327_residues
MRLLKLVPDDTNIQFLKWRNVAMAISLLMIVASIALVAVRGLNLGVDFVGGQSVRVEFTGAMPPIDEIREKVGAIGLGEA
TIQQFGSDKAVSIRTALPEGDKAAAERAGQRLVAGIADAFPTAKTGSVETVSGKVSEELLRTGALSLILAMIAISIYIWI
RFEWQFGVGALFALFHDVTLTFGFFALTQMQFDLNIVAALLTIIGYSLNDTIVVFDRIRENLKKYRKMEIIPLLDLSVNE
TLARTVMTSFTMLIALAVLLWVGPDVIFGFTAAMLLGIFVGTYSSVYMSAPILVWLKVGPHSFVPRTTAVTEGAERVSNR
NDDGAVV

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=305, Percent_Identity=36.0655737704918, Blast_Score=191, Evalue=5e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35519; Mature: 35519

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLKLVPDDTNIQFLKWRNVAMAISLLMIVASIALVAVRGLNLGVDFVGGQSVRVEFTG
CCCEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECC
AMPPIDEIREKVGAIGLGEATIQQFGSDKAVSIRTALPEGDKAAAERAGQRLVAGIADAF
CCCCHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
PTAKTGSVETVSGKVSEELLRTGALSLILAMIAISIYIWIRFEWQFGVGALFALFHDVTL
CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCHHHHHHHHHHHHH
TFGFFALTQMQFDLNIVAALLTIIGYSLNDTIVVFDRIRENLKKYRKMEIIPLLDLSVNE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHEEEEEEECCCHHH
TLARTVMTSFTMLIALAVLLWVGPDVIFGFTAAMLLGIFVGTYSSVYMSAPILVWLKVGP
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECC
HSFVPRTTAVTEGAERVSNRNDDGAVV
CCCCCCHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRLLKLVPDDTNIQFLKWRNVAMAISLLMIVASIALVAVRGLNLGVDFVGGQSVRVEFTG
CCCEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECC
AMPPIDEIREKVGAIGLGEATIQQFGSDKAVSIRTALPEGDKAAAERAGQRLVAGIADAF
CCCCHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
PTAKTGSVETVSGKVSEELLRTGALSLILAMIAISIYIWIRFEWQFGVGALFALFHDVTL
CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCHHHHHHHHHHHHH
TFGFFALTQMQFDLNIVAALLTIIGYSLNDTIVVFDRIRENLKKYRKMEIIPLLDLSVNE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHEEEEEEECCCHHH
TLARTVMTSFTMLIALAVLLWVGPDVIFGFTAAMLLGIFVGTYSSVYMSAPILVWLKVGP
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECC
HSFVPRTTAVTEGAERVSNRNDDGAVV
CCCCCCHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9175857 [H]