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The map label for this gene is secD [H]

Identifier: 103487199

GI number: 103487199

Start: 1804090

End: 1805703

Strand: Reverse

Name: secD [H]

Synonym: Sala_1714

Alternate gene names: 103487199

Gene position: 1805703-1804090 (Counterclockwise)

Preceding gene: 103487200

Following gene: 103487198

Centisome position: 53.98

GC content: 65.86

Gene sequence:

>1614_bases
ATGCTCGATTTCCCGCGCTGGAAAACCATCGGCATCAGCATCATCCTGCTGCTCGGCGTCCTTTTTGCCATTCCCAGCTT
CCTGCCGCCCAAGGCGTTCGAGAGCCTGCCCGGCTTTGCACAGGCGAAGGTCAATCTGGGGCTCGACCTTGCGGGCGGCA
GCCACCTGCTGCTCGAGGCCGACATCAACGACCTGCGCAAGACGCAGCTTACGAACATGGAAAAGACGGTGCGTACCGCG
ATGCGCGGGCAGAGCGGGCCCGACGACGACATCGCGATCGGCGAATTGTCGACGACGGGCGGGCGGATCAGCTTCCTCGT
CCGCGACGCCGCGAAGCTCGACGCCGCGCGCGAGCGGCTGTTCAGCGAGACGCAGGGCGCCGGGCTGACGGGCCAGCGCG
ACTGGAATATCGACGTCGTCGATTCGACGCGCATCGTGATGAGCCCGACGAGCGCCGGGCAGACGCAGGCGGTGGCGAAC
GCGATGGACACCGCGCGCGACATCATCGACAAGCGCGTCAACGCGCTCGGCACGCGCGAGCCAACGATCATCCGCGAAGG
CGCCGACCGCATCGTCGTGCAGGTTCCGGGGCTTCAGGACCCGGCCGCGCTGAAAGAACTGATCGGCAAGACCGCGCGGC
TCGAGTTCCGTATGGTCGACGCCAACGCCGACCCCGCCGAAGCCGCCGCGGGCCGCGTGCCGGTGGGCAGCGAAATCGTC
CCCTATGCCGAGGGCGAGGGCAATGGCGCGGCGTTCGAGGTGCTGCGCCGTCAGGTGATGATCAGCGGCGAGCAGCTCAT
CAACGCGCAGCAAAGCTATGACCCGCAGACGAGCGAGCCGGTGGTGTCGATCCGGTTCGATTCGGCGGGGTCGAGCACCT
TTGCCAAGGTGACGGCGCAGAATGTCGGCAAGCGGTTCGCGATGGTGCTCGACGGCAAGGTGCTGTCGGCGCCGTCGATC
AACGAGCCGATCCTGGGCGGCAGCGCTCAGATTTCGGGCAGTTTCAGCGTCGCGAGCGCGAACAACCTCGCGATCTCGCT
GCGATCGGGCGCGCTGCCGGTGAAGATGACGGTGGTCGAGGAGCGCACGGTGACGCCCGAGCTTGGCGCCGATTCGATCC
GCAAGGGCGCGATCGCGGGCATCATCGCGACCGTCGCGGTGCTCGCCTTCATGATCATCGTCTATGGCCGCTTCGGCATC
TATGCGAATGTCGCGCTGATCTTCAACATCGGGCTGATCATCGCGATCATGGCGGCGTTCAATGCGACGCTGACGCTGCC
GGGCATCGCGGGCTTCGTGCTCACCATCGGGGCCGCGGTCGACGCGAATGTGCTCATCAACGAGCGTATCCGCGAGGAAC
TGAAACGCGGGCGCCGCGTGTTCCAGGCGGTCGAGCTTGGCTATTCGGAAGCCAGCCGGGCAATTTTCGACGCCAATATC
ACCAACGTCATCGCGGCGGGGCTGATGTTCTGGTTCGGCTCCGGGCCGATCAAGGGCTTTGCGGTCGTGCTGACGATCGG
CATCATCACCAGTGTGTTCACCGCCGTCACCGTGACGCGCCTGTTCGCCGCGCGCTGGTTGCACAAGACGCGCCCTGCGT
CGCTGAACATTTGA

Upstream 100 bases:

>100_bases
TGGCCGACGTGCTGCAACCGGGCGGCAAGCCCGCGAACGACTGACGCGACGGGGCACGCGGCTTTCCGCGGCCTCCCTTT
TTGCAATCGGATCACAGACC

Downstream 100 bases:

>100_bases
AGGTAAGGGATCGACCATGCGTTTGCTGAAACTCGTCCCCGACGACACCAATATCCAGTTCCTGAAGTGGCGCAACGTAG
CCATGGCGATCAGCTTGCTG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 537; Mature: 537

Protein sequence:

>537_residues
MLDFPRWKTIGISIILLLGVLFAIPSFLPPKAFESLPGFAQAKVNLGLDLAGGSHLLLEADINDLRKTQLTNMEKTVRTA
MRGQSGPDDDIAIGELSTTGGRISFLVRDAAKLDAARERLFSETQGAGLTGQRDWNIDVVDSTRIVMSPTSAGQTQAVAN
AMDTARDIIDKRVNALGTREPTIIREGADRIVVQVPGLQDPAALKELIGKTARLEFRMVDANADPAEAAAGRVPVGSEIV
PYAEGEGNGAAFEVLRRQVMISGEQLINAQQSYDPQTSEPVVSIRFDSAGSSTFAKVTAQNVGKRFAMVLDGKVLSAPSI
NEPILGGSAQISGSFSVASANNLAISLRSGALPVKMTVVEERTVTPELGADSIRKGAIAGIIATVAVLAFMIIVYGRFGI
YANVALIFNIGLIIAIMAAFNATLTLPGIAGFVLTIGAAVDANVLINERIREELKRGRRVFQAVELGYSEASRAIFDANI
TNVIAAGLMFWFGSGPIKGFAVVLTIGIITSVFTAVTVTRLFAARWLHKTRPASLNI

Sequences:

>Translated_537_residues
MLDFPRWKTIGISIILLLGVLFAIPSFLPPKAFESLPGFAQAKVNLGLDLAGGSHLLLEADINDLRKTQLTNMEKTVRTA
MRGQSGPDDDIAIGELSTTGGRISFLVRDAAKLDAARERLFSETQGAGLTGQRDWNIDVVDSTRIVMSPTSAGQTQAVAN
AMDTARDIIDKRVNALGTREPTIIREGADRIVVQVPGLQDPAALKELIGKTARLEFRMVDANADPAEAAAGRVPVGSEIV
PYAEGEGNGAAFEVLRRQVMISGEQLINAQQSYDPQTSEPVVSIRFDSAGSSTFAKVTAQNVGKRFAMVLDGKVLSAPSI
NEPILGGSAQISGSFSVASANNLAISLRSGALPVKMTVVEERTVTPELGADSIRKGAIAGIIATVAVLAFMIIVYGRFGI
YANVALIFNIGLIIAIMAAFNATLTLPGIAGFVLTIGAAVDANVLINERIREELKRGRRVFQAVELGYSEASRAIFDANI
TNVIAAGLMFWFGSGPIKGFAVVLTIGIITSVFTAVTVTRLFAARWLHKTRPASLNI
>Mature_537_residues
MLDFPRWKTIGISIILLLGVLFAIPSFLPPKAFESLPGFAQAKVNLGLDLAGGSHLLLEADINDLRKTQLTNMEKTVRTA
MRGQSGPDDDIAIGELSTTGGRISFLVRDAAKLDAARERLFSETQGAGLTGQRDWNIDVVDSTRIVMSPTSAGQTQAVAN
AMDTARDIIDKRVNALGTREPTIIREGADRIVVQVPGLQDPAALKELIGKTARLEFRMVDANADPAEAAAGRVPVGSEIV
PYAEGEGNGAAFEVLRRQVMISGEQLINAQQSYDPQTSEPVVSIRFDSAGSSTFAKVTAQNVGKRFAMVLDGKVLSAPSI
NEPILGGSAQISGSFSVASANNLAISLRSGALPVKMTVVEERTVTPELGADSIRKGAIAGIIATVAVLAFMIIVYGRFGI
YANVALIFNIGLIIAIMAAFNATLTLPGIAGFVLTIGAAVDANVLINERIREELKRGRRVFQAVELGYSEASRAIFDANI
TNVIAAGLMFWFGSGPIKGFAVVLTIGIITSVFTAVTVTRLFAARWLHKTRPASLNI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=528, Percent_Identity=38.4469696969697, Blast_Score=296, Evalue=2e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 57048; Mature: 57048

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDFPRWKTIGISIILLLGVLFAIPSFLPPKAFESLPGFAQAKVNLGLDLAGGSHLLLEA
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCEEEEEEEEEEECCCCEEEEEC
DINDLRKTQLTNMEKTVRTAMRGQSGPDDDIAIGELSTTGGRISFLVRDAAKLDAARERL
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEHHHHHHHHHHHHH
FSETQGAGLTGQRDWNIDVVDSTRIVMSPTSAGQTQAVANAMDTARDIIDKRVNALGTRE
HHHCCCCCCCCCCCCCEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
PTIIREGADRIVVQVPGLQDPAALKELIGKTARLEFRMVDANADPAEAAAGRVPVGSEIV
CCEEECCCCEEEEECCCCCCHHHHHHHHCCHHEEEEEEEECCCCHHHHCCCCCCCCCCCC
PYAEGEGNGAAFEVLRRQVMISGEQLINAQQSYDPQTSEPVVSIRFDSAGSSTFAKVTAQ
CCCCCCCCHHHHHHHHHHHHHCHHHHHCCHHCCCCCCCCCEEEEEECCCCCCHHHHHHHH
NVGKRFAMVLDGKVLSAPSINEPILGGSAQISGSFSVASANNLAISLRSGALPVKMTVVE
HHHHHEEEEECCCEECCCCCCCCCCCCCCEECCCEEEECCCCEEEEEECCCCEEEEEEEE
ERTVTPELGADSIRKGAIAGIIATVAVLAFMIIVYGRFGIYANVALIFNIGLIIAIMAAF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NATLTLPGIAGFVLTIGAAVDANVLINERIREELKRGRRVFQAVELGYSEASRAIFDANI
CCEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHEEECCCH
TNVIAAGLMFWFGSGPIKGFAVVLTIGIITSVFTAVTVTRLFAARWLHKTRPASLNI
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLDFPRWKTIGISIILLLGVLFAIPSFLPPKAFESLPGFAQAKVNLGLDLAGGSHLLLEA
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCEEEEEEEEEEECCCCEEEEEC
DINDLRKTQLTNMEKTVRTAMRGQSGPDDDIAIGELSTTGGRISFLVRDAAKLDAARERL
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEHHHHHHHHHHHHH
FSETQGAGLTGQRDWNIDVVDSTRIVMSPTSAGQTQAVANAMDTARDIIDKRVNALGTRE
HHHCCCCCCCCCCCCCEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
PTIIREGADRIVVQVPGLQDPAALKELIGKTARLEFRMVDANADPAEAAAGRVPVGSEIV
CCEEECCCCEEEEECCCCCCHHHHHHHHCCHHEEEEEEEECCCCHHHHCCCCCCCCCCCC
PYAEGEGNGAAFEVLRRQVMISGEQLINAQQSYDPQTSEPVVSIRFDSAGSSTFAKVTAQ
CCCCCCCCHHHHHHHHHHHHHCHHHHHCCHHCCCCCCCCCEEEEEECCCCCCHHHHHHHH
NVGKRFAMVLDGKVLSAPSINEPILGGSAQISGSFSVASANNLAISLRSGALPVKMTVVE
HHHHHEEEEECCCEECCCCCCCCCCCCCCEECCCEEEECCCCEEEEEECCCCEEEEEEEE
ERTVTPELGADSIRKGAIAGIIATVAVLAFMIIVYGRFGIYANVALIFNIGLIIAIMAAF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NATLTLPGIAGFVLTIGAAVDANVLINERIREELKRGRRVFQAVELGYSEASRAIFDANI
CCEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHEEECCCH
TNVIAAGLMFWFGSGPIKGFAVVLTIGIITSVFTAVTVTRLFAARWLHKTRPASLNI
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA