| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487194
Identifier: 103487194
GI number: 103487194
Start: 1799155
End: 1800294
Strand: Reverse
Name: 103487194
Synonym: Sala_1709
Alternate gene names: NA
Gene position: 1800294-1799155 (Counterclockwise)
Preceding gene: 103487195
Following gene: 103487192
Centisome position: 53.82
GC content: 66.23
Gene sequence:
>1140_bases ATGACCGACCTGCCCCAAACCAACCTGACCATGGTGACGCTCGTGAAGCCCGAAGGGCAGCTCGAAGTGTCGCTCGAACG GCGGCCGATGCCCGAACCCAAGCCGCATGAGGTGGTGGTGAAGCTGCTCGCGGCGCCGATCAACCCGTCGGACCTGGGCC TGCTGTTCGGCGGCGCGGACATGAGCACCGCGCGGGCGTCGGAGCGTGATGGGCTGCCCGTGCTGACCGCCGATGTGCCG CCCGCGGGGATGCGCGCGATGGCGGGGCGCATCGGCGAGGCGATGGCGATCGGCAACGAAGGCTGCGGCATCGTTGTCGC GGCGGGCGCATCGGCGGAGGCGCAGGCGCTGCTCGGCAAGACGGTCGCGGTGCTCGGCGGCGAAATGTATGCCGAATATC GCTGCCTGCCGGTGCAGATGGCGATGCCACTGCCCGATGGGACCGATCCCAGGGACGGCGCTTCCTGTTTCGTCAACCCG CTCACCAGCCTCGCCTTTACCGAAACGACGCGGATGGAGGGGCACAGCGCGATCGTCCACACCGCCGCGGCGTCGAACCT GGGCCAGATGCTGGTCAAGATTTGCGCCAAGGACGGCATCCCGCTGGTCAACATCGTGCGCAGCGATGCGCAGGTCGCGC TGCTGAAAGGCATCGGCGCGCAATATGTCGTGAACAGCAGCGCCGACGATTTCATGGACCGGCTGATCGACGCGATCGCC GAAACGGGCGCGACGATCGGTTTCGACGCGACGGGCGGCGGCAAGCTGGCGGGGCAGATTTTGACCGCGATGGAGGCGGC GGCGGTGCGGCGCATGACGAGCTACAGCCGCTATGGTTCCGACACGTTCAAACAGGTCTATATCTATGGCGCGCTCGACC TGTCGCCGACGACTTTCTCGGCGCGCAGTTTCGGCCTGACCTGGGCGCTCGGCGGCTTTTTGCTGACGCCCTTTCTGGCG AAGGCGGGGGCCGAGGTTGTCGGGCGGATGCGCCAGCGCGTCGTCGACGAACTGACCACGACCTTCAAGAGCCATTACAG CCACGAAATCTCGCTGACCGAAGCGCTCGATGTCGAAACCGCGCAGGCCTATAATGCGAAGCGGACGGGCGAGAAATATC TGATCCGCCCGCACGGATAA
Upstream 100 bases:
>100_bases CGGGATAAGGACCAAATTTTCTTGGGAGGCGATTGCCAGCCTCGCCGCATCGCCCTATTCCCGTTGCATCCAGAAACTGA AATGCGACGGGAGATGCGCG
Downstream 100 bases:
>100_bases TCGAAAGGGCCCACCGGCGGCGGCCGGTGAGCCCTCGATTTCGGGAATGGGGGCCGGTGAACGGGGCGCCTTTGGCGACC GGCCCTGGCTGCCTTATGGC
Product: alcohol dehydrogenase GroES-like protein
Products: NA
Alternate protein names: Alcohol Dehydrogenase; Alcohol Dehydrogenase GroES Domain Protein; Alcohol Dehydrogenase GroES-Like Protein; NADPHQuinone Reductase; Alcohol Dehydrogenase GroES-Like Domain Family; Zn-Dependent; Oxidoreductase; Alcohol Dehydrogenase GroES Domain-Containing Protein; NADH Oxidoreductas; Zn-Dependent Alcohol Dehydrogenase; Alcohol Dehydrogenase-Like Protein; Zn-Dependent Oxidoreductase; NADH Oxidoreductase-Like; Quinone Oxidoreductase
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MTDLPQTNLTMVTLVKPEGQLEVSLERRPMPEPKPHEVVVKLLAAPINPSDLGLLFGGADMSTARASERDGLPVLTADVP PAGMRAMAGRIGEAMAIGNEGCGIVVAAGASAEAQALLGKTVAVLGGEMYAEYRCLPVQMAMPLPDGTDPRDGASCFVNP LTSLAFTETTRMEGHSAIVHTAAASNLGQMLVKICAKDGIPLVNIVRSDAQVALLKGIGAQYVVNSSADDFMDRLIDAIA ETGATIGFDATGGGKLAGQILTAMEAAAVRRMTSYSRYGSDTFKQVYIYGALDLSPTTFSARSFGLTWALGGFLLTPFLA KAGAEVVGRMRQRVVDELTTTFKSHYSHEISLTEALDVETAQAYNAKRTGEKYLIRPHG
Sequences:
>Translated_379_residues MTDLPQTNLTMVTLVKPEGQLEVSLERRPMPEPKPHEVVVKLLAAPINPSDLGLLFGGADMSTARASERDGLPVLTADVP PAGMRAMAGRIGEAMAIGNEGCGIVVAAGASAEAQALLGKTVAVLGGEMYAEYRCLPVQMAMPLPDGTDPRDGASCFVNP LTSLAFTETTRMEGHSAIVHTAAASNLGQMLVKICAKDGIPLVNIVRSDAQVALLKGIGAQYVVNSSADDFMDRLIDAIA ETGATIGFDATGGGKLAGQILTAMEAAAVRRMTSYSRYGSDTFKQVYIYGALDLSPTTFSARSFGLTWALGGFLLTPFLA KAGAEVVGRMRQRVVDELTTTFKSHYSHEISLTEALDVETAQAYNAKRTGEKYLIRPHG >Mature_378_residues TDLPQTNLTMVTLVKPEGQLEVSLERRPMPEPKPHEVVVKLLAAPINPSDLGLLFGGADMSTARASERDGLPVLTADVPP AGMRAMAGRIGEAMAIGNEGCGIVVAAGASAEAQALLGKTVAVLGGEMYAEYRCLPVQMAMPLPDGTDPRDGASCFVNPL TSLAFTETTRMEGHSAIVHTAAASNLGQMLVKICAKDGIPLVNIVRSDAQVALLKGIGAQYVVNSSADDFMDRLIDAIAE TGATIGFDATGGGKLAGQILTAMEAAAVRRMTSYSRYGSDTFKQVYIYGALDLSPTTFSARSFGLTWALGGFLLTPFLAK AGAEVVGRMRQRVVDELTTTFKSHYSHEISLTEALDVETAQAYNAKRTGEKYLIRPHG
Specific function: Unknown
COG id: COG0604
COG function: function code CR; NADPH:quinone reductase and related Zn-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40055; Mature: 39923
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLPQTNLTMVTLVKPEGQLEVSLERRPMPEPKPHEVVVKLLAAPINPSDLGLLFGGAD CCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCC MSTARASERDGLPVLTADVPPAGMRAMAGRIGEAMAIGNEGCGIVVAAGASAEAQALLGK CCHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHEEEECCCCCEEEEECCCCHHHHHHHHH TVAVLGGEMYAEYRCLPVQMAMPLPDGTDPRDGASCFVNPLTSLAFTETTRMEGHSAIVH HHHHHCCHHHHCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHEEE TAAASNLGQMLVKICAKDGIPLVNIVRSDAQVALLKGIGAQYVVNSSADDFMDRLIDAIA HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEHHHCCCCEEEECCCHHHHHHHHHHHHH ETGATIGFDATGGGKLAGQILTAMEAAAVRRMTSYSRYGSDTFKQVYIYGALDLSPTTFS HCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEC ARSFGLTWALGGFLLTPFLAKAGAEVVGRMRQRVVDELTTTFKSHYSHEISLTEALDVET HHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHCCHH AQAYNAKRTGEKYLIRPHG HHHHCCCCCCCEEEEECCC >Mature Secondary Structure TDLPQTNLTMVTLVKPEGQLEVSLERRPMPEPKPHEVVVKLLAAPINPSDLGLLFGGAD CCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCC MSTARASERDGLPVLTADVPPAGMRAMAGRIGEAMAIGNEGCGIVVAAGASAEAQALLGK CCHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHEEEECCCCCEEEEECCCCHHHHHHHHH TVAVLGGEMYAEYRCLPVQMAMPLPDGTDPRDGASCFVNPLTSLAFTETTRMEGHSAIVH HHHHHCCHHHHCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHEEE TAAASNLGQMLVKICAKDGIPLVNIVRSDAQVALLKGIGAQYVVNSSADDFMDRLIDAIA HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEHHHCCCCEEEECCCHHHHHHHHHHHHH ETGATIGFDATGGGKLAGQILTAMEAAAVRRMTSYSRYGSDTFKQVYIYGALDLSPTTFS HCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEC ARSFGLTWALGGFLLTPFLAKAGAEVVGRMRQRVVDELTTTFKSHYSHEISLTEALDVET HHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHCCHH AQAYNAKRTGEKYLIRPHG HHHHCCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA