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The map label for this gene is recF [H]

Identifier: 103487192

GI number: 103487192

Start: 1797330

End: 1798439

Strand: Reverse

Name: recF [H]

Synonym: Sala_1707

Alternate gene names: 103487192

Gene position: 1798439-1797330 (Counterclockwise)

Preceding gene: 103487194

Following gene: 103487191

Centisome position: 53.76

GC content: 73.87

Gene sequence:

>1110_bases
ATGACGCTTGTCCGCCTCTCGCTCACCGATTTTCGCAATCATGCCGGCGCGGACCTGGCGGCTGCACCGGGGCTTGTCGC
GCTCCACGGCGACAATGGCGCGGGCAAGACGAATATCCTCGAAGCCATTTCGCTGCTCGCGCCGGGACGCGGGCTGCGCC
GCGCGCCGCTGTCCGACATGGTGCGCGATGGTGCGCACGGCGGCTTTGCCGTCTTTGCCGAGGTGGCGGCGGCGGAGGGG
CTGCCGCCCGTCGCGCTCGGCACGGGGATCGAACCCGCGCAGCCCCGACGCCGCATCGTCCGCATCAATGGCGCGCCCGC
CGCGGCGACGGCGCTGGGCGAATGGCTGGCGATATTGTGGCTGACCCCGGCGATGGACCGGCTGTTCGTCGAGACCGCGG
GCAATCGGCGGCGCTTCCTCGACCGCCTCGTCCTCGCGCTCGACCCGCGCCACGCGCAGCATGGCAACCGCTATGAAGCG
GCGCTCCGCGCGCGCGGCAAGCTGCTCGCCGACCTCGCGGCGGCCGATGAGACCTGGCTTACGAGCCTCGAGGCGCAGCT
CGCCGAACATGGCGCGGCGATGGATGCGGCGCGGCTCGATACGCTCGCGGCGCTGTCGGCGGAGCTGGCGGGACAACCCG
ACGCGCCCTTTGCGCGGCCGCTGCTCACGCTGGTCGACAGCGAGGGCGCCGAGCGCAGCGCGCCGCATAGCGCGGAGGCG
CTGAAGGCGCTGTTCGCCGCGCGGCGACGGATCGACGCCGCCGCGGGCCGTGCGACCGCCGGGCCGCACCGCGACGATCT
GGTGGCGGTGCATGCCGTGACCGGCCGCGCCGCCGCGCGCTGCTCGACCGGCGAGCAAAAGGCGATGCTGCTGTCGCTCG
TCCTCGCCCATGGCGACTGCGTGGCGCGGCGGCGCGGCCAGCGGCCGGTGCTGCTGCTCGACGAGGTGGCGGCGCATCTT
GATCCGCTGCGCCGCGCGGCGCTGTACGAGCGGCTGGCGGGGCAGGGCGGGCAGGCGTGGCTGACAGGGACCGAAGCGGC
GCTGTTCGACGCCATGCCCGGTCCGGTAACGCGCTATCGCATCATCGGCGGGCGGATCGCCGCAGGTTAG

Upstream 100 bases:

>100_bases
AAATTACCGTTAAACGGGACGTGTCACGATTGATCATCGGCGGCGCAGATGTGTGTCGGCGCTGGCATCGCCGCATCGGC
TGCGGTAGGCGCGGGCGGAC

Downstream 100 bases:

>100_bases
ATATACCGCACGCCGCTCTAATGGGTCCTGACTATAGCGACCGCCGGTGGAGGCGGGCGCGTGCCGTGCCGCCACCACTA
TGCTATGCTGGGCGCCTCAA

Product: recombination protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MTLVRLSLTDFRNHAGADLAAAPGLVALHGDNGAGKTNILEAISLLAPGRGLRRAPLSDMVRDGAHGGFAVFAEVAAAEG
LPPVALGTGIEPAQPRRRIVRINGAPAAATALGEWLAILWLTPAMDRLFVETAGNRRRFLDRLVLALDPRHAQHGNRYEA
ALRARGKLLADLAAADETWLTSLEAQLAEHGAAMDAARLDTLAALSAELAGQPDAPFARPLLTLVDSEGAERSAPHSAEA
LKALFAARRRIDAAAGRATAGPHRDDLVAVHAVTGRAAARCSTGEQKAMLLSLVLAHGDCVARRRGQRPVLLLDEVAAHL
DPLRRAALYERLAGQGGQAWLTGTEAALFDAMPGPVTRYRIIGGRIAAG

Sequences:

>Translated_369_residues
MTLVRLSLTDFRNHAGADLAAAPGLVALHGDNGAGKTNILEAISLLAPGRGLRRAPLSDMVRDGAHGGFAVFAEVAAAEG
LPPVALGTGIEPAQPRRRIVRINGAPAAATALGEWLAILWLTPAMDRLFVETAGNRRRFLDRLVLALDPRHAQHGNRYEA
ALRARGKLLADLAAADETWLTSLEAQLAEHGAAMDAARLDTLAALSAELAGQPDAPFARPLLTLVDSEGAERSAPHSAEA
LKALFAARRRIDAAAGRATAGPHRDDLVAVHAVTGRAAARCSTGEQKAMLLSLVLAHGDCVARRRGQRPVLLLDEVAAHL
DPLRRAALYERLAGQGGQAWLTGTEAALFDAMPGPVTRYRIIGGRIAAG
>Mature_368_residues
TLVRLSLTDFRNHAGADLAAAPGLVALHGDNGAGKTNILEAISLLAPGRGLRRAPLSDMVRDGAHGGFAVFAEVAAAEGL
PPVALGTGIEPAQPRRRIVRINGAPAAATALGEWLAILWLTPAMDRLFVETAGNRRRFLDRLVLALDPRHAQHGNRYEAA
LRARGKLLADLAAADETWLTSLEAQLAEHGAAMDAARLDTLAALSAELAGQPDAPFARPLLTLVDSEGAERSAPHSAEAL
KALFAARRRIDAAAGRATAGPHRDDLVAVHAVTGRAAARCSTGEQKAMLLSLVLAHGDCVARRRGQRPVLLLDEVAAHLD
PLRRAALYERLAGQGGQAWLTGTEAALFDAMPGPVTRYRIIGGRIAAG

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP [H]

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family [H]

Homologues:

Organism=Escherichia coli, GI1790135, Length=386, Percent_Identity=28.4974093264249, Blast_Score=98, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001238
- InterPro:   IPR018078
- InterPro:   IPR003395 [H]

Pfam domain/function: PF02463 SMC_N [H]

EC number: NA

Molecular weight: Translated: 38763; Mature: 38632

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS00617 RECF_1 ; PS00618 RECF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLVRLSLTDFRNHAGADLAAAPGLVALHGDNGAGKTNILEAISLLAPGRGLRRAPLSDM
CEEEEEEHHHHHCCCCCCHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHH
VRDGAHGGFAVFAEVAAAEGLPPVALGTGIEPAQPRRRIVRINGAPAAATALGEWLAILW
HHCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
LTPAMDRLFVETAGNRRRFLDRLVLALDPRHAQHGNRYEAALRARGKLLADLAAADETWL
HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
TSLEAQLAEHGAAMDAARLDTLAALSAELAGQPDAPFARPLLTLVDSEGAERSAPHSAEA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHH
LKALFAARRRIDAAAGRATAGPHRDDLVAVHAVTGRAAARCSTGEQKAMLLSLVLAHGDC
HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHHHCCHH
VARRRGQRPVLLLDEVAAHLDPLRRAALYERLAGQGGQAWLTGTEAALFDAMPGPVTRYR
HHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHCCCCCCEEEE
IIGGRIAAG
EECCEECCC
>Mature Secondary Structure 
TLVRLSLTDFRNHAGADLAAAPGLVALHGDNGAGKTNILEAISLLAPGRGLRRAPLSDM
EEEEEEHHHHHCCCCCCHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHH
VRDGAHGGFAVFAEVAAAEGLPPVALGTGIEPAQPRRRIVRINGAPAAATALGEWLAILW
HHCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
LTPAMDRLFVETAGNRRRFLDRLVLALDPRHAQHGNRYEAALRARGKLLADLAAADETWL
HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
TSLEAQLAEHGAAMDAARLDTLAALSAELAGQPDAPFARPLLTLVDSEGAERSAPHSAEA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHH
LKALFAARRRIDAAAGRATAGPHRDDLVAVHAVTGRAAARCSTGEQKAMLLSLVLAHGDC
HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHHHCCHH
VARRRGQRPVLLLDEVAAHLDPLRRAALYERLAGQGGQAWLTGTEAALFDAMPGPVTRYR
HHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHCCCCCCEEEE
IIGGRIAAG
EECCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA