Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487089

Identifier: 103487089

GI number: 103487089

Start: 1681104

End: 1681742

Strand: Reverse

Name: 103487089

Synonym: Sala_1604

Alternate gene names: NA

Gene position: 1681742-1681104 (Counterclockwise)

Preceding gene: 103487091

Following gene: 103487087

Centisome position: 50.27

GC content: 64.16

Gene sequence:

>639_bases
ATGACCAATCCGCGGGCGCAGGCCCAACAAACCAAAGCCCCGCTGGTCCGCCGACTGCGCGAGGGGGTGAAACGCTTTTT
CGGGCCGTGGGGCATGTTCGTGCGCGGGTTCATCAAGCATCCGGTCATGGTCGGGTCGATCGTGCCGTCGTCGCCGACGC
TGATCCGCCACATGCTGAAACCCATCGACTGGAAAAACACCAGGCTGTTCGTCGAATATGGTCCCGGCGTCGGCACCTTC
TGCCGCCCGGTGCTCGAACACCTGGCCGGCGACGCGACCCTGATCGCGATCGACACGAACGAGGATTTTGTCGATTATCT
GCGGAGGGACATTCGCGACAGCCGTTTCATCGCGGTCCATGGTTCGGCCGCCGACGTCGAGGACATTGTTCGCGCGCACG
GGTTCGACCATGCCGATTATGTGCTTTCCGGCCTGCCATTCTCGACCCTGCCTGCCGGCGTCGGTCCGGCGATTGCCGCG
GCGACCCACCGCGTGCTGCGCCCCGGCGGCGCCTTCCTCGTCTATCAGTTCCGTGCCCGCGCGCGCGATTTCCTTGCCGC
GCATTTCGCCCGCATCGACAATGCGTTCGAGTGGGTGAATGTGCCGCCCTGTTTCCTCTTCTGGGCCTGGAAGGATTAG

Upstream 100 bases:

>100_bases
CACCGTCGTCGGGCTGTCCAGAGTCAAGACAGACTCTTTCCTTGCGCGACGCCCCTGATTTTGCCACGCATTTGATCGAC
CCAACAACGCGAAAGCCATC

Downstream 100 bases:

>100_bases
GGGCTAGACATCGGGATCGGGGTCACCGAGGCCGAAGTTGAGTTTGCGCGACACCGTATAATCGGCGACGCCGACGACGA
ACCAGGCGAGTGTCCAGCGC

Product: methyltransferase type 12

Products: S-adenosyl-L-homocysteine; phosphatidyl-N-methylethanolamine

Alternate protein names: Ribosomal RNA Adenine Dimethylase; Phospholipid N-Methyltransferase; Methyltransferase; Ribosomal RNA Adenine Dimethylase Domain-Containing Protein; Ribosomal RNA Adenine Dimethylase Domain Protein; Phospholipid N-Methyltransferase-Like Protein; Ribosomal RNA Adenine Methylase Transferase-Like Protein; Ribosomal RNA Adenine Methylase Transferase; Generic Methyltransferase; Dimethyladenosine Transferase; Conserved Protein

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MTNPRAQAQQTKAPLVRRLREGVKRFFGPWGMFVRGFIKHPVMVGSIVPSSPTLIRHMLKPIDWKNTRLFVEYGPGVGTF
CRPVLEHLAGDATLIAIDTNEDFVDYLRRDIRDSRFIAVHGSAADVEDIVRAHGFDHADYVLSGLPFSTLPAGVGPAIAA
ATHRVLRPGGAFLVYQFRARARDFLAAHFARIDNAFEWVNVPPCFLFWAWKD

Sequences:

>Translated_212_residues
MTNPRAQAQQTKAPLVRRLREGVKRFFGPWGMFVRGFIKHPVMVGSIVPSSPTLIRHMLKPIDWKNTRLFVEYGPGVGTF
CRPVLEHLAGDATLIAIDTNEDFVDYLRRDIRDSRFIAVHGSAADVEDIVRAHGFDHADYVLSGLPFSTLPAGVGPAIAA
ATHRVLRPGGAFLVYQFRARARDFLAAHFARIDNAFEWVNVPPCFLFWAWKD
>Mature_211_residues
TNPRAQAQQTKAPLVRRLREGVKRFFGPWGMFVRGFIKHPVMVGSIVPSSPTLIRHMLKPIDWKNTRLFVEYGPGVGTFC
RPVLEHLAGDATLIAIDTNEDFVDYLRRDIRDSRFIAVHGSAADVEDIVRAHGFDHADYVLSGLPFSTLPAGVGPAIAAA
THRVLRPGGAFLVYQFRARARDFLAAHFARIDNAFEWVNVPPCFLFWAWKD

Specific function: Unknown

COG id: COG3963

COG function: function code I; Phospholipid N-methyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.1.1.17

Molecular weight: Translated: 23828; Mature: 23697

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNPRAQAQQTKAPLVRRLREGVKRFFGPWGMFVRGFIKHPVMVGSIVPSSPTLIRHMLK
CCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHC
PIDWKNTRLFVEYGPGVGTFCRPVLEHLAGDATLIAIDTNEDFVDYLRRDIRDSRFIAVH
CCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEEE
GSAADVEDIVRAHGFDHADYVLSGLPFSTLPAGVGPAIAAATHRVLRPGGAFLVYQFRAR
CCCCCHHHHHHHCCCCCHHHHHHCCCHHHCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHH
ARDFLAAHFARIDNAFEWVNVPPCFLFWAWKD
HHHHHHHHHHHHHCCHHCCCCCCEEEEEEECC
>Mature Secondary Structure 
TNPRAQAQQTKAPLVRRLREGVKRFFGPWGMFVRGFIKHPVMVGSIVPSSPTLIRHMLK
CCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHC
PIDWKNTRLFVEYGPGVGTFCRPVLEHLAGDATLIAIDTNEDFVDYLRRDIRDSRFIAVH
CCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEEE
GSAADVEDIVRAHGFDHADYVLSGLPFSTLPAGVGPAIAAATHRVLRPGGAFLVYQFRAR
CCCCCHHHHHHHCCCCCHHHHHHCCCHHHCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHH
ARDFLAAHFARIDNAFEWVNVPPCFLFWAWKD
HHHHHHHHHHHHHCCHHCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S-adenosyl-L-methionine; phosphatidylethanolamine

Specific reaction: S-adenosyl-L-methionine + phosphatidylethanolamine = S-adenosyl-L-homocysteine + phosphatidyl-N-methylethanolamine

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA