Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is hflB [C]

Identifier: 103487091

GI number: 103487091

Start: 1683270

End: 1685591

Strand: Reverse

Name: hflB [C]

Synonym: Sala_1606

Alternate gene names: 103487091

Gene position: 1685591-1683270 (Counterclockwise)

Preceding gene: 103487093

Following gene: 103487089

Centisome position: 50.39

GC content: 66.84

Gene sequence:

>2322_bases
TTGGCCGAAGCAGTGGTAAAAGAAAAACAGGTCAAATTGCAGGTCGCGAACGCCCGCGCGGAGGAAAGCGGTGGCGGGAT
CGCGCGCATCCCGCGCGCGGCGATGGCCGAGCTGGGCCTCAGCGAAGGCGACGTCGTGCAGATCAGCGGCAAGCGCGACA
CGGCATCGCGCGTCGTCGCGCCCTATCCCGAGGATGAGGGGCTGAACGTCATCCGCCTTGACGGCCTGCAGCGGGCCAAC
GCCGGCGCTGGCGCGGGTGATATGGTGGTTCTGAGCCGCGTCGAAACACGCCCGGCAACGCGCGTCGTCTTTGCGCCCGC
GCAGGAAAATCTGCGCCTGCAAGGCTCGGCGAACGCGCTCAAGCGCAGCTTTTTCGGCCGCCCGCTCGTCGCGGGCGATA
CGGTCGCGACCGCGGGGCAGCAGCGCGTTTCCGCCGGTGACATGCCGCCGCAACTGCGCCAGATGCTCAACGCCCCGGCC
TATGCGCTGGCCGAGGTGCGGTTGCTCGTCGTGTCGGCGAGTCCCAAGGGCGTCGTCACGATCGACGAGAATACCGAGGT
CGAGCTGCTCCCCGAATATCAGGAACCGCACGACGCGCGTCGCACCGACGTCACCTATGACGATCTGGGCGGCCTTGGCG
AGACGATCGACCAGCTGCGCGAGATGGTCGAGCTGCCGCTGCGCTATCCCGAACTTTTTCGCCGCCTCGGCGTCGATCCG
CCGCGCGGTGTGCTGCTGCACGGTCCGCCGGGAACCGGCAAGACGCGGCTCGCCCGCGCCGTCGCGAACGAGAGCGAGGC
GCAATTCTTCCTGATCAACGGGCCCGAGATCATGGGCAGCGCCTATGGCGAATCCGAAAAGCGGCTGCGCGACATTTTCG
AGGCTGCGGCCAAGGCGGCGCCGTCGATCCTGTTCATCGACGAGATCGATTCGATCGCGCCGAAACGCGGACAGGTGCAT
GGCGAGGCCGAAAAGCGCCTCGTTGCGCAATTGCTCACGCTGATGGACGGGCTGGAGCCACGCACCAACCTGGTCGTGAT
CGCCGCGACCAACCGCCCCGACGCGATCGACGAAGCGCTGCGGCGGCCGGGCCGGTTCGACCGCGAGATCGTGATCGGAG
TCCCCGACGAGAAGGGACGGCGCGAGATATTGGGTATCCACACGCGCGGTATGCCGCTGGGCGACGATGTCGACCTCGAC
GAACTGGCGCGCACGACCTTTGGCTTCGTTGGCGCCGACATGGCCGCGCTGACCCGCGAAGCGGCGATCGAGGCGGTGCG
GCGGATCATGCCCAGGCTGAACCTCGAGGACGGGACCATCCCGTCCGAGGTGCTCGACGAACTCAGCGTGCTGCGCGCCG
ACTTCAACAATGCGCTGAAGCGCGTCCAGCCGTCGGCGATGCGCGAGGTAATGGTGCAGGCGCCCAAGACCCGCTGGAGC
GACATCGGCGGGCTCGACGCGGCGCGTGACAAGATGATCGAGGGTATCGAACTGCCGCTGAAGCACCCCGAAGCCTTTCG
CCGTCTCGGCATCCGCCCGGCCAAGGGTTTCCTGCTCTATGGCCCGCCGGGCACCGGCAAGACGCTGCTCGCGAAGGCGG
CGGCGCGCGAATCGGACGCCAATTTCATCGCGATCAAATCGTCGGACCTGCTCTCCAAATGGTATGGCGAGAGCGAACAG
CAGATCGCGCGCCTGTTCGCGCGCGCCCGCGCGGTCGCCCCGACGATCATTTTCATCGATGAACTCGACAGCCTGGTCCC
CGCGCGCGGCAGCGGCACGTCGGGCGAGCCGCAGGTGACCGAGCGCGTCGTCAATACGATCCTCGCCGAAATGGACGGGA
TCGAGGAGATGCAGTCGGTCGTCGTGATCGGTGCGACCAACCGCCCGAACCTGATCGACCCCGCGTTGCTGCGCCCCGGA
CGGCTCGACGAACTGATTTACGTGTCGGTGCCCGACCGCGAGGGGCGGCGGCGCATCCTGGAAATCCAGACTGGCAAGAT
GCCGCTGGCAGGCGATGTCGACCTTGCGCTGTTGGCGGAACGGACCGCGCGCTTCACTGGCGCCGACCTGGAAGACCTGT
CGCGCCGCGCGGGGCTGGCGGCGCTCAAGCGCTCGATCGGCGCCGACACGGTCACGATGGCCGATTTCGAGGCGGCGCTG
AAAGATACGCGGGCTTCCGTGACCGAAGCCATGGAAAAGGATTATGAAAAGATCCAGGGCGAGATCAAGCAGAAGGCGAT
GAGCGTCGACCCGATCGGCTTTTTCGCGCCGGGAATGCTGAAACCGGTCCGCGACCAGAAGCATGATGAGCCGCGCGACT
GA

Upstream 100 bases:

>100_bases
AATTTGTGCGCTGCGGCATGAATTGCCCGGAGTCGGGGGTCGCAAATCGGGAACCGTCGTCCTATCTTCGTCATTCTGAC
CATTTTGCGGGAGATACCCC

Downstream 100 bases:

>100_bases
ATGCGCATGTCGTCCCGGCCTTCGCCGGGATGACAAGGTATTTACTGATGTGGTTCGCTATTAATGGGTCCTGTCCCTAA
CAGGCTGGTCCAGCCGCAGC

Product: AAA family ATPase, CDC48 subfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 773; Mature: 772

Protein sequence:

>773_residues
MAEAVVKEKQVKLQVANARAEESGGGIARIPRAAMAELGLSEGDVVQISGKRDTASRVVAPYPEDEGLNVIRLDGLQRAN
AGAGAGDMVVLSRVETRPATRVVFAPAQENLRLQGSANALKRSFFGRPLVAGDTVATAGQQRVSAGDMPPQLRQMLNAPA
YALAEVRLLVVSASPKGVVTIDENTEVELLPEYQEPHDARRTDVTYDDLGGLGETIDQLREMVELPLRYPELFRRLGVDP
PRGVLLHGPPGTGKTRLARAVANESEAQFFLINGPEIMGSAYGESEKRLRDIFEAAAKAAPSILFIDEIDSIAPKRGQVH
GEAEKRLVAQLLTLMDGLEPRTNLVVIAATNRPDAIDEALRRPGRFDREIVIGVPDEKGRREILGIHTRGMPLGDDVDLD
ELARTTFGFVGADMAALTREAAIEAVRRIMPRLNLEDGTIPSEVLDELSVLRADFNNALKRVQPSAMREVMVQAPKTRWS
DIGGLDAARDKMIEGIELPLKHPEAFRRLGIRPAKGFLLYGPPGTGKTLLAKAAARESDANFIAIKSSDLLSKWYGESEQ
QIARLFARARAVAPTIIFIDELDSLVPARGSGTSGEPQVTERVVNTILAEMDGIEEMQSVVVIGATNRPNLIDPALLRPG
RLDELIYVSVPDREGRRRILEIQTGKMPLAGDVDLALLAERTARFTGADLEDLSRRAGLAALKRSIGADTVTMADFEAAL
KDTRASVTEAMEKDYEKIQGEIKQKAMSVDPIGFFAPGMLKPVRDQKHDEPRD

Sequences:

>Translated_773_residues
MAEAVVKEKQVKLQVANARAEESGGGIARIPRAAMAELGLSEGDVVQISGKRDTASRVVAPYPEDEGLNVIRLDGLQRAN
AGAGAGDMVVLSRVETRPATRVVFAPAQENLRLQGSANALKRSFFGRPLVAGDTVATAGQQRVSAGDMPPQLRQMLNAPA
YALAEVRLLVVSASPKGVVTIDENTEVELLPEYQEPHDARRTDVTYDDLGGLGETIDQLREMVELPLRYPELFRRLGVDP
PRGVLLHGPPGTGKTRLARAVANESEAQFFLINGPEIMGSAYGESEKRLRDIFEAAAKAAPSILFIDEIDSIAPKRGQVH
GEAEKRLVAQLLTLMDGLEPRTNLVVIAATNRPDAIDEALRRPGRFDREIVIGVPDEKGRREILGIHTRGMPLGDDVDLD
ELARTTFGFVGADMAALTREAAIEAVRRIMPRLNLEDGTIPSEVLDELSVLRADFNNALKRVQPSAMREVMVQAPKTRWS
DIGGLDAARDKMIEGIELPLKHPEAFRRLGIRPAKGFLLYGPPGTGKTLLAKAAARESDANFIAIKSSDLLSKWYGESEQ
QIARLFARARAVAPTIIFIDELDSLVPARGSGTSGEPQVTERVVNTILAEMDGIEEMQSVVVIGATNRPNLIDPALLRPG
RLDELIYVSVPDREGRRRILEIQTGKMPLAGDVDLALLAERTARFTGADLEDLSRRAGLAALKRSIGADTVTMADFEAAL
KDTRASVTEAMEKDYEKIQGEIKQKAMSVDPIGFFAPGMLKPVRDQKHDEPRD
>Mature_772_residues
AEAVVKEKQVKLQVANARAEESGGGIARIPRAAMAELGLSEGDVVQISGKRDTASRVVAPYPEDEGLNVIRLDGLQRANA
GAGAGDMVVLSRVETRPATRVVFAPAQENLRLQGSANALKRSFFGRPLVAGDTVATAGQQRVSAGDMPPQLRQMLNAPAY
ALAEVRLLVVSASPKGVVTIDENTEVELLPEYQEPHDARRTDVTYDDLGGLGETIDQLREMVELPLRYPELFRRLGVDPP
RGVLLHGPPGTGKTRLARAVANESEAQFFLINGPEIMGSAYGESEKRLRDIFEAAAKAAPSILFIDEIDSIAPKRGQVHG
EAEKRLVAQLLTLMDGLEPRTNLVVIAATNRPDAIDEALRRPGRFDREIVIGVPDEKGRREILGIHTRGMPLGDDVDLDE
LARTTFGFVGADMAALTREAAIEAVRRIMPRLNLEDGTIPSEVLDELSVLRADFNNALKRVQPSAMREVMVQAPKTRWSD
IGGLDAARDKMIEGIELPLKHPEAFRRLGIRPAKGFLLYGPPGTGKTLLAKAAARESDANFIAIKSSDLLSKWYGESEQQ
IARLFARARAVAPTIIFIDELDSLVPARGSGTSGEPQVTERVVNTILAEMDGIEEMQSVVVIGATNRPNLIDPALLRPGR
LDELIYVSVPDREGRRRILEIQTGKMPLAGDVDLALLAERTARFTGADLEDLSRRAGLAALKRSIGADTVTMADFEAALK
DTRASVTEAMEKDYEKIQGEIKQKAMSVDPIGFFAPGMLKPVRDQKHDEPRD

Specific function: Seems To Act As An ATP-Dependent Zinc Metallopeptidase. Involved In The Degradation Of Sigma-32. Degrades Carboxy- Terminal-Tagged Cytoplasmic Proteins. These Proteins Are Tagged With An 11-Amino-Acid Nonpolar Destabilizing Tail VIa A Mechanism Involving

COG id: COG0464

COG function: function code O; ATPases of the AAA+ class

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family. CDC48 subfamily [H]

Homologues:

Organism=Homo sapiens, GI6005942, Length=703, Percent_Identity=44.8079658605974, Blast_Score=593, Evalue=1e-169,
Organism=Homo sapiens, GI157671927, Length=541, Percent_Identity=48.2439926062847, Blast_Score=501, Evalue=1e-142,
Organism=Homo sapiens, GI45643125, Length=596, Percent_Identity=43.2885906040268, Blast_Score=443, Evalue=1e-124,
Organism=Homo sapiens, GI45643123, Length=596, Percent_Identity=43.4563758389262, Blast_Score=443, Evalue=1e-124,
Organism=Homo sapiens, GI229577436, Length=555, Percent_Identity=44.3243243243243, Blast_Score=416, Evalue=1e-116,
Organism=Homo sapiens, GI4505725, Length=481, Percent_Identity=37.2141372141372, Blast_Score=272, Evalue=7e-73,
Organism=Homo sapiens, GI194018488, Length=519, Percent_Identity=37.7649325626204, Blast_Score=272, Evalue=1e-72,
Organism=Homo sapiens, GI153792536, Length=276, Percent_Identity=45.6521739130435, Blast_Score=239, Evalue=7e-63,
Organism=Homo sapiens, GI24497618, Length=314, Percent_Identity=41.7197452229299, Blast_Score=238, Evalue=1e-62,
Organism=Homo sapiens, GI24430151, Length=236, Percent_Identity=45.7627118644068, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI21361144, Length=243, Percent_Identity=45.2674897119342, Blast_Score=201, Evalue=2e-51,
Organism=Homo sapiens, GI195539395, Length=261, Percent_Identity=41.7624521072797, Blast_Score=201, Evalue=3e-51,
Organism=Homo sapiens, GI24497435, Length=278, Percent_Identity=41.726618705036, Blast_Score=200, Evalue=5e-51,
Organism=Homo sapiens, GI5729991, Length=305, Percent_Identity=38.0327868852459, Blast_Score=199, Evalue=9e-51,
Organism=Homo sapiens, GI4506209, Length=230, Percent_Identity=44.7826086956522, Blast_Score=199, Evalue=1e-50,
Organism=Homo sapiens, GI24430155, Length=305, Percent_Identity=38.0327868852459, Blast_Score=198, Evalue=1e-50,
Organism=Homo sapiens, GI89064750, Length=305, Percent_Identity=38.0327868852459, Blast_Score=198, Evalue=1e-50,
Organism=Homo sapiens, GI5901990, Length=293, Percent_Identity=41.9795221843003, Blast_Score=195, Evalue=1e-49,
Organism=Homo sapiens, GI300192933, Length=239, Percent_Identity=44.3514644351464, Blast_Score=187, Evalue=2e-47,
Organism=Homo sapiens, GI156564401, Length=385, Percent_Identity=35.8441558441558, Blast_Score=184, Evalue=3e-46,
Organism=Homo sapiens, GI14149767, Length=298, Percent_Identity=39.261744966443, Blast_Score=183, Evalue=5e-46,
Organism=Homo sapiens, GI62177112, Length=298, Percent_Identity=39.261744966443, Blast_Score=183, Evalue=5e-46,
Organism=Homo sapiens, GI226371754, Length=327, Percent_Identity=33.3333333333333, Blast_Score=177, Evalue=5e-44,
Organism=Homo sapiens, GI7657689, Length=225, Percent_Identity=41.7777777777778, Blast_Score=173, Evalue=5e-43,
Organism=Homo sapiens, GI21327685, Length=225, Percent_Identity=41.7777777777778, Blast_Score=173, Evalue=5e-43,
Organism=Homo sapiens, GI31742536, Length=288, Percent_Identity=35.7638888888889, Blast_Score=172, Evalue=8e-43,
Organism=Homo sapiens, GI112789543, Length=288, Percent_Identity=35.7638888888889, Blast_Score=172, Evalue=8e-43,
Organism=Homo sapiens, GI310125280, Length=249, Percent_Identity=41.3654618473896, Blast_Score=170, Evalue=4e-42,
Organism=Homo sapiens, GI7019569, Length=240, Percent_Identity=38.75, Blast_Score=170, Evalue=6e-42,
Organism=Homo sapiens, GI310125282, Length=247, Percent_Identity=41.7004048582996, Blast_Score=169, Evalue=1e-41,
Organism=Homo sapiens, GI4507173, Length=230, Percent_Identity=40.4347826086956, Blast_Score=163, Evalue=5e-40,
Organism=Homo sapiens, GI17865802, Length=249, Percent_Identity=36.5461847389558, Blast_Score=162, Evalue=1e-39,
Organism=Homo sapiens, GI40806170, Length=290, Percent_Identity=37.5862068965517, Blast_Score=160, Evalue=4e-39,
Organism=Homo sapiens, GI11875211, Length=290, Percent_Identity=37.5862068965517, Blast_Score=160, Evalue=4e-39,
Organism=Homo sapiens, GI31377644, Length=249, Percent_Identity=38.9558232931727, Blast_Score=156, Evalue=7e-38,
Organism=Homo sapiens, GI64084766, Length=289, Percent_Identity=30.4498269896194, Blast_Score=126, Evalue=9e-29,
Organism=Homo sapiens, GI116292174, Length=281, Percent_Identity=29.5373665480427, Blast_Score=102, Evalue=2e-21,
Organism=Homo sapiens, GI40806173, Length=138, Percent_Identity=40.5797101449275, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI11321607, Length=144, Percent_Identity=34.7222222222222, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI261337161, Length=113, Percent_Identity=37.1681415929204, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI1789568, Length=228, Percent_Identity=49.1228070175439, Blast_Score=209, Evalue=6e-55,
Organism=Caenorhabditis elegans, GI17532375, Length=780, Percent_Identity=43.5897435897436, Blast_Score=616, Evalue=1e-176,
Organism=Caenorhabditis elegans, GI17531535, Length=778, Percent_Identity=42.2879177377892, Blast_Score=602, Evalue=1e-172,
Organism=Caenorhabditis elegans, GI17537217, Length=608, Percent_Identity=38.6513157894737, Blast_Score=370, Evalue=1e-102,
Organism=Caenorhabditis elegans, GI17508053, Length=522, Percent_Identity=34.8659003831418, Blast_Score=268, Evalue=7e-72,
Organism=Caenorhabditis elegans, GI193206116, Length=278, Percent_Identity=40.2877697841727, Blast_Score=217, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI133931034, Length=278, Percent_Identity=40.2877697841727, Blast_Score=217, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI193206114, Length=278, Percent_Identity=40.2877697841727, Blast_Score=217, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI17554786, Length=293, Percent_Identity=41.6382252559727, Blast_Score=204, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI17563250, Length=264, Percent_Identity=42.0454545454545, Blast_Score=202, Evalue=4e-52,
Organism=Caenorhabditis elegans, GI25144278, Length=238, Percent_Identity=44.9579831932773, Blast_Score=201, Evalue=8e-52,
Organism=Caenorhabditis elegans, GI25144281, Length=238, Percent_Identity=44.9579831932773, Blast_Score=201, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI71987372, Length=228, Percent_Identity=43.859649122807, Blast_Score=198, Evalue=8e-51,
Organism=Caenorhabditis elegans, GI71987364, Length=228, Percent_Identity=43.859649122807, Blast_Score=198, Evalue=9e-51,
Organism=Caenorhabditis elegans, GI17563248, Length=230, Percent_Identity=43.4782608695652, Blast_Score=198, Evalue=1e-50,
Organism=Caenorhabditis elegans, GI25153574, Length=469, Percent_Identity=31.1300639658849, Blast_Score=198, Evalue=1e-50,
Organism=Caenorhabditis elegans, GI17508701, Length=261, Percent_Identity=40.9961685823755, Blast_Score=194, Evalue=2e-49,
Organism=Caenorhabditis elegans, GI17505546, Length=226, Percent_Identity=43.8053097345133, Blast_Score=190, Evalue=3e-48,
Organism=Caenorhabditis elegans, GI17554784, Length=230, Percent_Identity=44.3478260869565, Blast_Score=189, Evalue=4e-48,
Organism=Caenorhabditis elegans, GI17562804, Length=479, Percent_Identity=30.062630480167, Blast_Score=185, Evalue=9e-47,
Organism=Caenorhabditis elegans, GI193209502, Length=218, Percent_Identity=43.1192660550459, Blast_Score=181, Evalue=9e-46,
Organism=Caenorhabditis elegans, GI86561515, Length=238, Percent_Identity=38.655462184874, Blast_Score=172, Evalue=5e-43,
Organism=Caenorhabditis elegans, GI25146157, Length=277, Percent_Identity=37.5451263537906, Blast_Score=171, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI133901662, Length=415, Percent_Identity=32.0481927710843, Blast_Score=170, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI133901658, Length=417, Percent_Identity=31.89448441247, Blast_Score=169, Evalue=4e-42,
Organism=Caenorhabditis elegans, GI17508421, Length=287, Percent_Identity=39.7212543554007, Blast_Score=167, Evalue=2e-41,
Organism=Caenorhabditis elegans, GI32563584, Length=289, Percent_Identity=39.4463667820069, Blast_Score=166, Evalue=4e-41,
Organism=Caenorhabditis elegans, GI17554264, Length=210, Percent_Identity=42.8571428571429, Blast_Score=161, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI71994521, Length=275, Percent_Identity=36.7272727272727, Blast_Score=160, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI115534323, Length=245, Percent_Identity=37.9591836734694, Blast_Score=149, Evalue=8e-36,
Organism=Caenorhabditis elegans, GI17541226, Length=219, Percent_Identity=36.0730593607306, Blast_Score=143, Evalue=4e-34,
Organism=Caenorhabditis elegans, GI17541224, Length=219, Percent_Identity=36.0730593607306, Blast_Score=143, Evalue=4e-34,
Organism=Caenorhabditis elegans, GI17560432, Length=281, Percent_Identity=34.1637010676157, Blast_Score=140, Evalue=2e-33,
Organism=Saccharomyces cerevisiae, GI6320077, Length=750, Percent_Identity=44.1333333333333, Blast_Score=589, Evalue=1e-169,
Organism=Saccharomyces cerevisiae, GI6323429, Length=570, Percent_Identity=46.140350877193, Blast_Score=462, Evalue=1e-130,
Organism=Saccharomyces cerevisiae, GI6322994, Length=620, Percent_Identity=40.3225806451613, Blast_Score=431, Evalue=1e-121,
Organism=Saccharomyces cerevisiae, GI6321709, Length=276, Percent_Identity=46.7391304347826, Blast_Score=243, Evalue=9e-65,
Organism=Saccharomyces cerevisiae, GI6322651, Length=501, Percent_Identity=32.5349301397206, Blast_Score=233, Evalue=7e-62,
Organism=Saccharomyces cerevisiae, GI6324000, Length=433, Percent_Identity=35.1039260969977, Blast_Score=223, Evalue=1e-58,
Organism=Saccharomyces cerevisiae, GI6320602, Length=251, Percent_Identity=45.4183266932271, Blast_Score=204, Evalue=5e-53,
Organism=Saccharomyces cerevisiae, GI6320197, Length=236, Percent_Identity=44.9152542372881, Blast_Score=201, Evalue=4e-52,
Organism=Saccharomyces cerevisiae, GI6321390, Length=238, Percent_Identity=43.6974789915966, Blast_Score=197, Evalue=5e-51,
Organism=Saccharomyces cerevisiae, GI6322704, Length=230, Percent_Identity=42.6086956521739, Blast_Score=192, Evalue=1e-49,
Organism=Saccharomyces cerevisiae, GI6324833, Length=292, Percent_Identity=39.3835616438356, Blast_Score=191, Evalue=5e-49,
Organism=Saccharomyces cerevisiae, GI6325281, Length=262, Percent_Identity=40.8396946564886, Blast_Score=187, Evalue=4e-48,
Organism=Saccharomyces cerevisiae, GI6324691, Length=236, Percent_Identity=42.3728813559322, Blast_Score=186, Evalue=1e-47,
Organism=Saccharomyces cerevisiae, GI6323736, Length=281, Percent_Identity=38.0782918149466, Blast_Score=177, Evalue=8e-45,
Organism=Saccharomyces cerevisiae, GI6325431, Length=233, Percent_Identity=39.0557939914163, Blast_Score=176, Evalue=1e-44,
Organism=Saccharomyces cerevisiae, GI6319554, Length=417, Percent_Identity=33.5731414868106, Blast_Score=175, Evalue=2e-44,
Organism=Saccharomyces cerevisiae, GI6320854, Length=244, Percent_Identity=40.5737704918033, Blast_Score=169, Evalue=2e-42,
Organism=Saccharomyces cerevisiae, GI6321465, Length=230, Percent_Identity=42.6086956521739, Blast_Score=164, Evalue=4e-41,
Organism=Saccharomyces cerevisiae, GI6325183, Length=303, Percent_Identity=33.6633663366337, Blast_Score=162, Evalue=1e-40,
Organism=Saccharomyces cerevisiae, GI6320887, Length=307, Percent_Identity=35.5048859934853, Blast_Score=155, Evalue=2e-38,
Organism=Saccharomyces cerevisiae, GI9755327, Length=187, Percent_Identity=27.807486631016, Blast_Score=76, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6320583, Length=139, Percent_Identity=30.9352517985612, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI17137560, Length=777, Percent_Identity=41.956241956242, Blast_Score=597, Evalue=1e-171,
Organism=Drosophila melanogaster, GI161076486, Length=777, Percent_Identity=41.956241956242, Blast_Score=597, Evalue=1e-171,
Organism=Drosophila melanogaster, GI161076488, Length=743, Percent_Identity=43.0686406460296, Blast_Score=590, Evalue=1e-168,
Organism=Drosophila melanogaster, GI19921202, Length=592, Percent_Identity=35.8108108108108, Blast_Score=352, Evalue=8e-97,
Organism=Drosophila melanogaster, GI24656825, Length=515, Percent_Identity=33.2038834951456, Blast_Score=265, Evalue=1e-70,
Organism=Drosophila melanogaster, GI24656820, Length=534, Percent_Identity=32.0224719101124, Blast_Score=257, Evalue=2e-68,
Organism=Drosophila melanogaster, GI45552965, Length=310, Percent_Identity=44.1935483870968, Blast_Score=251, Evalue=9e-67,
Organism=Drosophila melanogaster, GI281365776, Length=310, Percent_Identity=44.1935483870968, Blast_Score=251, Evalue=1e-66,
Organism=Drosophila melanogaster, GI24660075, Length=310, Percent_Identity=44.1935483870968, Blast_Score=251, Evalue=1e-66,
Organism=Drosophila melanogaster, GI21355121, Length=478, Percent_Identity=32.8451882845188, Blast_Score=236, Evalue=5e-62,
Organism=Drosophila melanogaster, GI281363136, Length=510, Percent_Identity=32.5490196078431, Blast_Score=219, Evalue=5e-57,
Organism=Drosophila melanogaster, GI78707192, Length=510, Percent_Identity=32.5490196078431, Blast_Score=219, Evalue=5e-57,
Organism=Drosophila melanogaster, GI24652279, Length=258, Percent_Identity=43.0232558139535, Blast_Score=217, Evalue=2e-56,
Organism=Drosophila melanogaster, GI18860063, Length=230, Percent_Identity=45.2173913043478, Blast_Score=204, Evalue=2e-52,
Organism=Drosophila melanogaster, GI24649446, Length=359, Percent_Identity=35.933147632312, Blast_Score=204, Evalue=2e-52,
Organism=Drosophila melanogaster, GI17137738, Length=230, Percent_Identity=45.2173913043478, Blast_Score=204, Evalue=3e-52,
Organism=Drosophila melanogaster, GI281361487, Length=240, Percent_Identity=43.3333333333333, Blast_Score=202, Evalue=9e-52,
Organism=Drosophila melanogaster, GI24658770, Length=262, Percent_Identity=43.5114503816794, Blast_Score=199, Evalue=6e-51,
Organism=Drosophila melanogaster, GI19920408, Length=279, Percent_Identity=41.5770609318996, Blast_Score=197, Evalue=2e-50,
Organism=Drosophila melanogaster, GI24651451, Length=237, Percent_Identity=43.8818565400844, Blast_Score=197, Evalue=2e-50,
Organism=Drosophila melanogaster, GI17738151, Length=251, Percent_Identity=41.0358565737052, Blast_Score=196, Evalue=4e-50,
Organism=Drosophila melanogaster, GI24640100, Length=261, Percent_Identity=41.7624521072797, Blast_Score=192, Evalue=6e-49,
Organism=Drosophila melanogaster, GI24663015, Length=261, Percent_Identity=41.3793103448276, Blast_Score=187, Evalue=2e-47,
Organism=Drosophila melanogaster, GI24644145, Length=295, Percent_Identity=38.6440677966102, Blast_Score=185, Evalue=1e-46,
Organism=Drosophila melanogaster, GI24581396, Length=274, Percent_Identity=41.6058394160584, Blast_Score=178, Evalue=1e-44,
Organism=Drosophila melanogaster, GI24665814, Length=283, Percent_Identity=39.5759717314488, Blast_Score=176, Evalue=6e-44,
Organism=Drosophila melanogaster, GI28574878, Length=283, Percent_Identity=39.5759717314488, Blast_Score=176, Evalue=6e-44,
Organism=Drosophila melanogaster, GI17864540, Length=385, Percent_Identity=34.2857142857143, Blast_Score=175, Evalue=1e-43,
Organism=Drosophila melanogaster, GI28573010, Length=247, Percent_Identity=43.3198380566802, Blast_Score=174, Evalue=2e-43,
Organism=Drosophila melanogaster, GI18859657, Length=248, Percent_Identity=38.3064516129032, Blast_Score=172, Evalue=6e-43,
Organism=Drosophila melanogaster, GI24639391, Length=242, Percent_Identity=42.9752066115703, Blast_Score=172, Evalue=1e-42,
Organism=Drosophila melanogaster, GI20129529, Length=238, Percent_Identity=41.1764705882353, Blast_Score=169, Evalue=6e-42,
Organism=Drosophila melanogaster, GI281360136, Length=294, Percent_Identity=33.6734693877551, Blast_Score=166, Evalue=4e-41,
Organism=Drosophila melanogaster, GI24644411, Length=294, Percent_Identity=33.6734693877551, Blast_Score=166, Evalue=4e-41,
Organism=Drosophila melanogaster, GI281360146, Length=294, Percent_Identity=33.6734693877551, Blast_Score=166, Evalue=5e-41,
Organism=Drosophila melanogaster, GI281360138, Length=294, Percent_Identity=33.6734693877551, Blast_Score=166, Evalue=5e-41,
Organism=Drosophila melanogaster, GI281360144, Length=294, Percent_Identity=33.6734693877551, Blast_Score=166, Evalue=5e-41,
Organism=Drosophila melanogaster, GI281360140, Length=294, Percent_Identity=33.6734693877551, Blast_Score=166, Evalue=5e-41,
Organism=Drosophila melanogaster, GI281360142, Length=294, Percent_Identity=33.6734693877551, Blast_Score=166, Evalue=5e-41,
Organism=Drosophila melanogaster, GI21357333, Length=294, Percent_Identity=33.6734693877551, Blast_Score=166, Evalue=5e-41,
Organism=Drosophila melanogaster, GI20129423, Length=232, Percent_Identity=37.5, Blast_Score=164, Evalue=2e-40,
Organism=Drosophila melanogaster, GI28571849, Length=290, Percent_Identity=38.9655172413793, Blast_Score=158, Evalue=2e-38,
Organism=Drosophila melanogaster, GI28571847, Length=290, Percent_Identity=38.9655172413793, Blast_Score=158, Evalue=2e-38,
Organism=Drosophila melanogaster, GI24639486, Length=233, Percent_Identity=36.0515021459227, Blast_Score=141, Evalue=2e-33,
Organism=Drosophila melanogaster, GI45554047, Length=176, Percent_Identity=41.4772727272727, Blast_Score=125, Evalue=9e-29,
Organism=Drosophila melanogaster, GI28573181, Length=243, Percent_Identity=28.3950617283951, Blast_Score=91, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR003593
- InterPro:   IPR005938
- InterPro:   IPR003959
- InterPro:   IPR003960
- InterPro:   IPR003338
- InterPro:   IPR004201
- InterPro:   IPR015415 [H]

Pfam domain/function: PF00004 AAA; PF02933 CDC48_2; PF02359 CDC48_N; PF09336 Vps4_C [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 84097; Mature: 83966

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS00858 PREPHENATE_DEHYDR_2 ; PS00674 AAA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MAEAVVKEKQVKLQVANARAEESGGGIARIPRAAMAELGLSEGDVVQISGKRDTASRVVA
CCCHHHHHHHHEEEEECCCCCCCCCCEECCCHHHHHHCCCCCCCEEEEECCCCCCCCEEC
PYPEDEGLNVIRLDGLQRANAGAGAGDMVVLSRVETRPATRVVFAPAQENLRLQGSANAL
CCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCEEECCCHHHH
KRSFFGRPLVAGDTVATAGQQRVSAGDMPPQLRQMLNAPAYALAEVRLLVVSASPKGVVT
HHHHCCCCCCCCCCHHHCCCHHCCCCCCCHHHHHHHCCCHHHHEEEEEEEEECCCCEEEE
IDENTEVELLPEYQEPHDARRTDVTYDDLGGLGETIDQLREMVELPLRYPELFRRLGVDP
ECCCCCEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
PRGVLLHGPPGTGKTRLARAVANESEAQFFLINGPEIMGSAYGESEKRLRDIFEAAAKAA
CCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHC
PSILFIDEIDSIAPKRGQVHGEAEKRLVAQLLTLMDGLEPRTNLVVIAATNRPDAIDEAL
CCEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH
RRPGRFDREIVIGVPDEKGRREILGIHTRGMPLGDDVDLDELARTTFGFVGADMAALTRE
HCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AAIEAVRRIMPRLNLEDGTIPSEVLDELSVLRADFNNALKRVQPSAMREVMVQAPKTRWS
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHH
DIGGLDAARDKMIEGIELPLKHPEAFRRLGIRPAKGFLLYGPPGTGKTLLAKAAARESDA
HCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCC
NFIAIKSSDLLSKWYGESEQQIARLFARARAVAPTIIFIDELDSLVPARGSGTSGEPQVT
CEEEEECHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCHHHH
ERVVNTILAEMDGIEEMQSVVVIGATNRPNLIDPALLRPGRLDELIYVSVPDREGRRRIL
HHHHHHHHHHHCCHHHHCCEEEEECCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCCEEE
EIQTGKMPLAGDVDLALLAERTARFTGADLEDLSRRAGLAALKRSIGADTVTMADFEAAL
EEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHH
KDTRASVTEAMEKDYEKIQGEIKQKAMSVDPIGFFAPGMLKPVRDQKHDEPRD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure 
AEAVVKEKQVKLQVANARAEESGGGIARIPRAAMAELGLSEGDVVQISGKRDTASRVVA
CCHHHHHHHHEEEEECCCCCCCCCCEECCCHHHHHHCCCCCCCEEEEECCCCCCCCEEC
PYPEDEGLNVIRLDGLQRANAGAGAGDMVVLSRVETRPATRVVFAPAQENLRLQGSANAL
CCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCEEECCCHHHH
KRSFFGRPLVAGDTVATAGQQRVSAGDMPPQLRQMLNAPAYALAEVRLLVVSASPKGVVT
HHHHCCCCCCCCCCHHHCCCHHCCCCCCCHHHHHHHCCCHHHHEEEEEEEEECCCCEEEE
IDENTEVELLPEYQEPHDARRTDVTYDDLGGLGETIDQLREMVELPLRYPELFRRLGVDP
ECCCCCEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
PRGVLLHGPPGTGKTRLARAVANESEAQFFLINGPEIMGSAYGESEKRLRDIFEAAAKAA
CCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHC
PSILFIDEIDSIAPKRGQVHGEAEKRLVAQLLTLMDGLEPRTNLVVIAATNRPDAIDEAL
CCEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH
RRPGRFDREIVIGVPDEKGRREILGIHTRGMPLGDDVDLDELARTTFGFVGADMAALTRE
HCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AAIEAVRRIMPRLNLEDGTIPSEVLDELSVLRADFNNALKRVQPSAMREVMVQAPKTRWS
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHH
DIGGLDAARDKMIEGIELPLKHPEAFRRLGIRPAKGFLLYGPPGTGKTLLAKAAARESDA
HCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCC
NFIAIKSSDLLSKWYGESEQQIARLFARARAVAPTIIFIDELDSLVPARGSGTSGEPQVT
CEEEEECHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCHHHH
ERVVNTILAEMDGIEEMQSVVVIGATNRPNLIDPALLRPGRLDELIYVSVPDREGRRRIL
HHHHHHHHHHHCCHHHHCCEEEEECCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCCEEE
EIQTGKMPLAGDVDLALLAERTARFTGADLEDLSRRAGLAALKRSIGADTVTMADFEAAL
EEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHH
KDTRASVTEAMEKDYEKIQGEIKQKAMSVDPIGFFAPGMLKPVRDQKHDEPRD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Metalloendopeptidases [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]