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The map label for this gene is rpoZ

Identifier: 103487087

GI number: 103487087

Start: 1679430

End: 1679774

Strand: Reverse

Name: rpoZ

Synonym: Sala_1602

Alternate gene names: 103487087

Gene position: 1679774-1679430 (Counterclockwise)

Preceding gene: 103487089

Following gene: 103487074

Centisome position: 50.21

GC content: 66.38

Gene sequence:

>345_bases
ATGGCCCGCGTTACCGTCGAGGATTGCGTCGACAAAGTTCCCAACCGTTTCGACCTGGTCCTGCTCTCCGCGCACCGCGC
CCGCGAAATCTCGGGCGGCTCGGAGCTGACCGTCGACCGCGACCGCGACAAGAACCCTGTCGTCGCGCTGCGCGAGATCG
CCGAGCAGACGATCCGTCCCAAGGATCTGCATGAAGCGCTCGTCGGCTCGTTGCAGAAGGTCGTCATCGACGATGACGAT
ACGCCCGATGAAATCAGTTCAATCAGCCGCTCGGCCGAAGCGCTGCGCCTGACCGCGGCGGCACCGCCGCGCAGCCCCGC
GGGCGGCGGCGGCGACTTCGAATAA

Upstream 100 bases:

>100_bases
GGGCGGCGCTTTCGTTGACAGGCGGGGGCGAGCCTGCTAGCGCGCAGCGCTTGCCGCCATGCCCCGCACAGGGCTGGCCT
CTCCCGTTTAAGGAATTATC

Downstream 100 bases:

>100_bases
GCGCCGCTGACAATCGATCGCCAAGGGGCCGCGGGAAACTGCGGCCCTTTTCTGGAGCGGCGTGCTGTATATCTGATTCA
CCGAGACGGAGCCTGCGGTT

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MARVTVEDCVDKVPNRFDLVLLSAHRAREISGGSELTVDRDRDKNPVVALREIAEQTIRPKDLHEALVGSLQKVVIDDDD
TPDEISSISRSAEALRLTAAAPPRSPAGGGGDFE

Sequences:

>Translated_114_residues
MARVTVEDCVDKVPNRFDLVLLSAHRAREISGGSELTVDRDRDKNPVVALREIAEQTIRPKDLHEALVGSLQKVVIDDDD
TPDEISSISRSAEALRLTAAAPPRSPAGGGGDFE
>Mature_113_residues
ARVTVEDCVDKVPNRFDLVLLSAHRAREISGGSELTVDRDRDKNPVVALREIAEQTIRPKDLHEALVGSLQKVVIDDDDT
PDEISSISRSAEALRLTAAAPPRSPAGGGGDFE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=64, Percent_Identity=53.125, Blast_Score=62, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_SPHAL (Q1GSQ7)

Other databases:

- EMBL:   CP000356
- RefSeq:   YP_616648.1
- GeneID:   4082754
- GenomeReviews:   CP000356_GR
- KEGG:   sal:Sala_1602
- NMPDR:   fig|317655.9.peg.1535
- HOGENOM:   HBG742204
- OMA:   QRARQIS
- ProtClustDB:   PRK00392
- BioCyc:   SALA317655:SALA_1602-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 12317; Mature: 12186

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCVDKVPNRFDLVLLSAHRAREISGGSELTVDRDRDKNPVVALREIAEQTIRP
CCCCCHHHHHHHCCCCEEEEEECCHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCC
KDLHEALVGSLQKVVIDDDDTPDEISSISRSAEALRLTAAAPPRSPAGGGGDFE
HHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARVTVEDCVDKVPNRFDLVLLSAHRAREISGGSELTVDRDRDKNPVVALREIAEQTIRP
CCCCHHHHHHHCCCCEEEEEECCHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCC
KDLHEALVGSLQKVVIDDDDTPDEISSISRSAEALRLTAAAPPRSPAGGGGDFE
HHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA