| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487054
Identifier: 103487054
GI number: 103487054
Start: 1640935
End: 1642302
Strand: Direct
Name: 103487054
Synonym: Sala_1569
Alternate gene names: NA
Gene position: 1640935-1642302 (Clockwise)
Preceding gene: 103487053
Following gene: 103487055
Centisome position: 49.05
GC content: 61.99
Gene sequence:
>1368_bases ATGACAATTGTTCCGATCATCACGACCCTTGCAGAATATCAGACACGATTCTGGGCGCTCGTCGGGGAGGATTTGCGCGC GCGCGGCTTTGCGCCACATTTCGTGTCGTTCGACGACCGCTCGTGCGACATGCTGAACAGCCGGGGTTTCGCAGTCACCG CCGCCAATGATGTCGCGCGGCCGCCGGCGAGTGAGCTCGAAGCGGTGCTTGACCGTGCGGGCGTGACGAACCTCGCCTAC TGGACGTCGCACGAACGCTTCGCGTTCGTGCGGTCGGATGATGAGGCGATGAGGGCGAAACTCGCGCGCAGCATCGTCGC GGCACAATCGGCCATTGCCGACGCGCAGCGAAACGGCCAGCCGGTCATGGTCCAGGAGGTCGGCGGCTTCCTGTCGGTCA TCGGATCGTGGTTTGCGGCGCGTAGCGCCGGAATCCGCCACTTTTTCATCGAACCCAGCTTTTTTCGCGGTCGGCTGCTG TTCCGAGAAGGCGATTTTGCCGCCCCCGTGATACCGGCGGACGCACGCGCCGATCATGGGGCTGACTTTTCGGCATATCT GCAAAAAACGCTGGCCGACGGGCAGATCGTCATCCCGAAAAAGGATGCCCACCATTATAATGCAGCGTGGAAAAAGGTGC TCAATCTCAGGAATGCGCGGCGCTTTGCCGAAAAGGCCTATGACAAGTATATTCTCGGCAAGCGGCAGGAGTTCGGCTTC ATCGGGCAGCACGCCGCAACGCATGTGAAGGCGCTCGTGAACTCGCGTAAGCTTGCAGGCCATTATACGCCGCTCGATGA TATCGATGATTTCCTGTATTTTCCGCTGCATGTGCCGGGCGATATTGCGCTGACGCTCCGGTCGCCCGAATATCTGGATC AGCTGGCGCTCGTCGACTATATCTGCCGTCACCTTCCCGACGGAGTGCGGCTGGCGATCAAGGAGCATCCCGCGATGGTC GGCATGATGCAGCCGGACCGGCTCAAGGCCATGCTCCGGCGCTACCCGCGCCTGGCGCTGATCGACCCCGGCACCAACAA TTATGCGGTCATGCGGCGGGCGAAGGGGGTTGTGACGATCAATAGCAAGACGGGCGCGGAAGCGGGCCTCATCGGTTTGC CCGTCATCGTGCTCGGCGATGCATTCTATCGCGAGGCCCCTTTCGCCCACGCCCTCGACAATCTGGTCGACCTGCCCGCG GCGATGCAAAAGCTGGTTGATGGCGAAGCCAGCTGTTCTGCCGGCCCGGCCCGGCTCGACTGGTTCGCGGGTGCCTGGGA ACTCAGCCGACCTGGCGAGCTTTATGTGACGGGCGCCGATGAGGTGCGGACCTTCACCGACACGCTGACGTCATATCTGC GCGCCTGA
Upstream 100 bases:
>100_bases AAAATATTTCATCGCGCGCGGCGCATCGTCGGTCCGCGCCTTTCCGGCGACCGGGAGAGCGCGTCCCGGTCGCCCTTCGC CTTATTGAGTTTACGATCCC
Downstream 100 bases:
>100_bases AAAGGCGCGATCCCATTGATTTCTTCCGGCTGACACAAGGCATCATGTCCGACAATCTCGTTTCAATCATCACCCCCGCC TATAAGGCCGCCGACATCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 455; Mature: 454
Protein sequence:
>455_residues MTIVPIITTLAEYQTRFWALVGEDLRARGFAPHFVSFDDRSCDMLNSRGFAVTAANDVARPPASELEAVLDRAGVTNLAY WTSHERFAFVRSDDEAMRAKLARSIVAAQSAIADAQRNGQPVMVQEVGGFLSVIGSWFAARSAGIRHFFIEPSFFRGRLL FREGDFAAPVIPADARADHGADFSAYLQKTLADGQIVIPKKDAHHYNAAWKKVLNLRNARRFAEKAYDKYILGKRQEFGF IGQHAATHVKALVNSRKLAGHYTPLDDIDDFLYFPLHVPGDIALTLRSPEYLDQLALVDYICRHLPDGVRLAIKEHPAMV GMMQPDRLKAMLRRYPRLALIDPGTNNYAVMRRAKGVVTINSKTGAEAGLIGLPVIVLGDAFYREAPFAHALDNLVDLPA AMQKLVDGEASCSAGPARLDWFAGAWELSRPGELYVTGADEVRTFTDTLTSYLRA
Sequences:
>Translated_455_residues MTIVPIITTLAEYQTRFWALVGEDLRARGFAPHFVSFDDRSCDMLNSRGFAVTAANDVARPPASELEAVLDRAGVTNLAY WTSHERFAFVRSDDEAMRAKLARSIVAAQSAIADAQRNGQPVMVQEVGGFLSVIGSWFAARSAGIRHFFIEPSFFRGRLL FREGDFAAPVIPADARADHGADFSAYLQKTLADGQIVIPKKDAHHYNAAWKKVLNLRNARRFAEKAYDKYILGKRQEFGF IGQHAATHVKALVNSRKLAGHYTPLDDIDDFLYFPLHVPGDIALTLRSPEYLDQLALVDYICRHLPDGVRLAIKEHPAMV GMMQPDRLKAMLRRYPRLALIDPGTNNYAVMRRAKGVVTINSKTGAEAGLIGLPVIVLGDAFYREAPFAHALDNLVDLPA AMQKLVDGEASCSAGPARLDWFAGAWELSRPGELYVTGADEVRTFTDTLTSYLRA >Mature_454_residues TIVPIITTLAEYQTRFWALVGEDLRARGFAPHFVSFDDRSCDMLNSRGFAVTAANDVARPPASELEAVLDRAGVTNLAYW TSHERFAFVRSDDEAMRAKLARSIVAAQSAIADAQRNGQPVMVQEVGGFLSVIGSWFAARSAGIRHFFIEPSFFRGRLLF REGDFAAPVIPADARADHGADFSAYLQKTLADGQIVIPKKDAHHYNAAWKKVLNLRNARRFAEKAYDKYILGKRQEFGFI GQHAATHVKALVNSRKLAGHYTPLDDIDDFLYFPLHVPGDIALTLRSPEYLDQLALVDYICRHLPDGVRLAIKEHPAMVG MMQPDRLKAMLRRYPRLALIDPGTNNYAVMRRAKGVVTINSKTGAEAGLIGLPVIVLGDAFYREAPFAHALDNLVDLPAA MQKLVDGEASCSAGPARLDWFAGAWELSRPGELYVTGADEVRTFTDTLTSYLRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50368; Mature: 50237
Theoretical pI: Translated: 8.12; Mature: 8.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIVPIITTLAEYQTRFWALVGEDLRARGFAPHFVSFDDRSCDMLNSRGFAVTAANDVAR CEEHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEECCCCCCCHHHCCCCEEEEECCCCCC PPASELEAVLDRAGVTNLAYWTSHERFAFVRSDDEAMRAKLARSIVAAQSAIADAQRNGQ CCHHHHHHHHHHCCCCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCC PVMVQEVGGFLSVIGSWFAARSAGIRHFFIEPSFFRGRLLFREGDFAAPVIPADARADHG CEEHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHCCEEEEECCCCCCCCCCCCCCCCCC ADFSAYLQKTLADGQIVIPKKDAHHYNAAWKKVLNLRNARRFAEKAYDKYILGKRQEFGF CCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC IGQHAATHVKALVNSRKLAGHYTPLDDIDDFLYFPLHVPGDIALTLRSPEYLDQLALVDY HHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHEEEEEECCCCEEEEECCHHHHHHHHHHHH ICRHLPDGVRLAIKEHPAMVGMMQPDRLKAMLRRYPRLALIDPGTNNYAVMRRAKGVVTI HHHHCCCCEEEEEECCCCEEECCCCHHHHHHHHHCCCEEEECCCCCCHHHEEECCCEEEE NSKTGAEAGLIGLPVIVLGDAFYREAPFAHALDNLVDLPAAMQKLVDGEASCSAGPARLD CCCCCCCCCHHHCHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH WFAGAWELSRPGELYVTGADEVRTFTDTLTSYLRA HCCCCEECCCCCEEEEECHHHHHHHHHHHHHHHCC >Mature Secondary Structure TIVPIITTLAEYQTRFWALVGEDLRARGFAPHFVSFDDRSCDMLNSRGFAVTAANDVAR EEHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEECCCCCCCHHHCCCCEEEEECCCCCC PPASELEAVLDRAGVTNLAYWTSHERFAFVRSDDEAMRAKLARSIVAAQSAIADAQRNGQ CCHHHHHHHHHHCCCCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCC PVMVQEVGGFLSVIGSWFAARSAGIRHFFIEPSFFRGRLLFREGDFAAPVIPADARADHG CEEHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHCCEEEEECCCCCCCCCCCCCCCCCC ADFSAYLQKTLADGQIVIPKKDAHHYNAAWKKVLNLRNARRFAEKAYDKYILGKRQEFGF CCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC IGQHAATHVKALVNSRKLAGHYTPLDDIDDFLYFPLHVPGDIALTLRSPEYLDQLALVDY HHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHEEEEEECCCCEEEEECCHHHHHHHHHHHH ICRHLPDGVRLAIKEHPAMVGMMQPDRLKAMLRRYPRLALIDPGTNNYAVMRRAKGVVTI HHHHCCCCEEEEEECCCCEEECCCCHHHHHHHHHCCCEEEECCCCCCHHHEEECCCEEEE NSKTGAEAGLIGLPVIVLGDAFYREAPFAHALDNLVDLPAAMQKLVDGEASCSAGPARLD CCCCCCCCCHHHCHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH WFAGAWELSRPGELYVTGADEVRTFTDTLTSYLRA HCCCCEECCCCCEEEEECHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA