Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487053

Identifier: 103487053

GI number: 103487053

Start: 1639528

End: 1640922

Strand: Direct

Name: 103487053

Synonym: Sala_1568

Alternate gene names: NA

Gene position: 1639528-1640922 (Clockwise)

Preceding gene: 103487052

Following gene: 103487054

Centisome position: 49.01

GC content: 57.42

Gene sequence:

>1395_bases
GTGCTGACTTCCATTTCCTTTGTTTTTACAGCGCTGTTCCTCTTCCTGCTGTGGAAAAAACAGCGGCCGATCTTCTTTGC
CGGATTCTTCATCCTGTTCGGCCTGATTTATCGCATCGTCGATGCCGTCTATCTCGATCTTGCCGGGCCGGTCTATGCTA
TCGAACTGGAACGCTATATCGGCGGCAACGGAGCCGCACCCGCGTTCATATTGTCCTGCTTTGCTTTCTTCCTGCCGCTG
GCCGTGCTGCTCCGTCGGGACAGGTTGACAAGGGGGATTCCGGGACTGCAGCCTGAGACACCCTATCACGCCCTGCTTCG
CAAGGGCGCGTTCGCCGGGCTCTGCGCGCTGATTCTGTTTCTTTATGTCGACATGGTGCGGATCGGGACGATCCCGCTGT
TTTCAGGTATGGACCGCCTCGAATATTCGCGGGTTGCCGGCTATCTGCACGGCCCTGCGTATGAGATGAACTTCCTCATC
AGTTCGACCATTGGCGTGTTTGCCTTTCTGCCGCGCCTGTTCGGCAAGCAATATTCCCTGAGCTTCATCGGCTTGATGGC
AGCGCTGCTATGCTATTGGGCGCTGACCGGGAACCGCTTTTCGCCTTTCTTCGTCACGTTGAGCTTTTTCTTCATTCCCT
ATGCCGCGATCGTCGCGCTGGAAAGCGCCGGCGCGATCCGCCGGGAATCGATGAGGAACGTATGGAGTGTCCTTGTATCA
TCGCGCGTCCTGCTGCTGCTGGGCGGGCTGGCGGCGAGCGTGGCGATCGTCGGCCTGATATTCAACAGCTATTATGATGT
GCGCAATTATGCCGACCCCTTCTTCCATATAAAGCAGCGTGTGCTTGTCCAACCCATCCAGATATGGGCGTCAGCGTGGG
ATAGCATCCGTTTCGGCCTGGCCGAACGGATTAACTGGCTGGCAATCGATCAGGTGCTGATCAATCCTGCGCGCCCCGAA
GGCAATACAACCATATACTATCTTATGGAACGCGAGCTGGGCTTTTTCCGCGCGGAAGAACTGATCGAGGCGGGACAGCA
ATATGCTGGGGGTTATCCGGAGATATTCTTTCTGCTGTTCGGCGTCCTGCCGGCTATCCCGCTGATGATCCTGTTTGGCA
CGGCGACCGTCTTCGTCCTGTATTGCGCGGTCAGGTCTTTCGCCCGGGGCCGCCCCCTCACCTGCATCATGGCGCTCTAT
GTCTTTTACGGGTTCAGCCTTTGCTACATCGGCGGCATGCTGAACTTCATCATTGCGCCCACCTTTCTGGTCAAGCTGGC
CTTGCTATGGGTCGTCTGGATCGCCGAAAAATATTTCATCGCGCGCGGCGCATCGTCGGTCCGCGCCTTTCCGGCGACCG
GGAGAGCGCGTCCCGGTCGCCCTTCGCCTTATTGA

Upstream 100 bases:

>100_bases
TAGGTGATCTGCTCGGTCATTCCGGGTCGCAGGCGGCAAGCGCCACCCATCCCTTCACCGGGCTTCCGCTGGCCAGCGTC
ATCATGACACCGAGGGCAGC

Downstream 100 bases:

>100_bases
GTTTACGATCCCATGACAATTGTTCCGATCATCACGACCCTTGCAGAATATCAGACACGATTCTGGGCGCTCGTCGGGGA
GGATTTGCGCGCGCGCGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MLTSISFVFTALFLFLLWKKQRPIFFAGFFILFGLIYRIVDAVYLDLAGPVYAIELERYIGGNGAAPAFILSCFAFFLPL
AVLLRRDRLTRGIPGLQPETPYHALLRKGAFAGLCALILFLYVDMVRIGTIPLFSGMDRLEYSRVAGYLHGPAYEMNFLI
SSTIGVFAFLPRLFGKQYSLSFIGLMAALLCYWALTGNRFSPFFVTLSFFFIPYAAIVALESAGAIRRESMRNVWSVLVS
SRVLLLLGGLAASVAIVGLIFNSYYDVRNYADPFFHIKQRVLVQPIQIWASAWDSIRFGLAERINWLAIDQVLINPARPE
GNTTIYYLMERELGFFRAEELIEAGQQYAGGYPEIFFLLFGVLPAIPLMILFGTATVFVLYCAVRSFARGRPLTCIMALY
VFYGFSLCYIGGMLNFIIAPTFLVKLALLWVVWIAEKYFIARGASSVRAFPATGRARPGRPSPY

Sequences:

>Translated_464_residues
MLTSISFVFTALFLFLLWKKQRPIFFAGFFILFGLIYRIVDAVYLDLAGPVYAIELERYIGGNGAAPAFILSCFAFFLPL
AVLLRRDRLTRGIPGLQPETPYHALLRKGAFAGLCALILFLYVDMVRIGTIPLFSGMDRLEYSRVAGYLHGPAYEMNFLI
SSTIGVFAFLPRLFGKQYSLSFIGLMAALLCYWALTGNRFSPFFVTLSFFFIPYAAIVALESAGAIRRESMRNVWSVLVS
SRVLLLLGGLAASVAIVGLIFNSYYDVRNYADPFFHIKQRVLVQPIQIWASAWDSIRFGLAERINWLAIDQVLINPARPE
GNTTIYYLMERELGFFRAEELIEAGQQYAGGYPEIFFLLFGVLPAIPLMILFGTATVFVLYCAVRSFARGRPLTCIMALY
VFYGFSLCYIGGMLNFIIAPTFLVKLALLWVVWIAEKYFIARGASSVRAFPATGRARPGRPSPY
>Mature_464_residues
MLTSISFVFTALFLFLLWKKQRPIFFAGFFILFGLIYRIVDAVYLDLAGPVYAIELERYIGGNGAAPAFILSCFAFFLPL
AVLLRRDRLTRGIPGLQPETPYHALLRKGAFAGLCALILFLYVDMVRIGTIPLFSGMDRLEYSRVAGYLHGPAYEMNFLI
SSTIGVFAFLPRLFGKQYSLSFIGLMAALLCYWALTGNRFSPFFVTLSFFFIPYAAIVALESAGAIRRESMRNVWSVLVS
SRVLLLLGGLAASVAIVGLIFNSYYDVRNYADPFFHIKQRVLVQPIQIWASAWDSIRFGLAERINWLAIDQVLINPARPE
GNTTIYYLMERELGFFRAEELIEAGQQYAGGYPEIFFLLFGVLPAIPLMILFGTATVFVLYCAVRSFARGRPLTCIMALY
VFYGFSLCYIGGMLNFIIAPTFLVKLALLWVVWIAEKYFIARGASSVRAFPATGRARPGRPSPY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52147; Mature: 52147

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTSISFVFTALFLFLLWKKQRPIFFAGFFILFGLIYRIVDAVYLDLAGPVYAIELERYI
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHH
GGNGAAPAFILSCFAFFLPLAVLLRRDRLTRGIPGLQPETPYHALLRKGAFAGLCALILF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHH
LYVDMVRIGTIPLFSGMDRLEYSRVAGYLHGPAYEMNFLISSTIGVFAFLPRLFGKQYSL
HHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
SFIGLMAALLCYWALTGNRFSPFFVTLSFFFIPYAAIVALESAGAIRRESMRNVWSVLVS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
SRVLLLLGGLAASVAIVGLIFNSYYDVRNYADPFFHIKQRVLVQPIQIWASAWDSIRFGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AERINWLAIDQVLINPARPEGNTTIYYLMERELGFFRAEELIEAGQQYAGGYPEIFFLLF
HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
GVLPAIPLMILFGTATVFVLYCAVRSFARGRPLTCIMALYVFYGFSLCYIGGMLNFIIAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFLVKLALLWVVWIAEKYFIARGASSVRAFPATGRARPGRPSPY
HHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MLTSISFVFTALFLFLLWKKQRPIFFAGFFILFGLIYRIVDAVYLDLAGPVYAIELERYI
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHH
GGNGAAPAFILSCFAFFLPLAVLLRRDRLTRGIPGLQPETPYHALLRKGAFAGLCALILF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHH
LYVDMVRIGTIPLFSGMDRLEYSRVAGYLHGPAYEMNFLISSTIGVFAFLPRLFGKQYSL
HHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
SFIGLMAALLCYWALTGNRFSPFFVTLSFFFIPYAAIVALESAGAIRRESMRNVWSVLVS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
SRVLLLLGGLAASVAIVGLIFNSYYDVRNYADPFFHIKQRVLVQPIQIWASAWDSIRFGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AERINWLAIDQVLINPARPEGNTTIYYLMERELGFFRAEELIEAGQQYAGGYPEIFFLLF
HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
GVLPAIPLMILFGTATVFVLYCAVRSFARGRPLTCIMALYVFYGFSLCYIGGMLNFIIAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFLVKLALLWVVWIAEKYFIARGASSVRAFPATGRARPGRPSPY
HHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA