| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is kynB
Identifier: 103486876
GI number: 103486876
Start: 1445842
End: 1446471
Strand: Reverse
Name: kynB
Synonym: Sala_1390
Alternate gene names: 103486876
Gene position: 1446471-1445842 (Counterclockwise)
Preceding gene: 103486877
Following gene: 103486875
Centisome position: 43.24
GC content: 66.35
Gene sequence:
>630_bases ATGAGCCGGATTTGGGACATTTCCCAGCCGCTGCACGCCGCGGTGCCGGTGTGGCCCGGCGAGCCCGCCTTCTCGCTCCA CAGCCATGCGGTGATCGGCGAGGGCTGTCCGGTCAATGTCGGCGGCATGTTCACGCCGCTGCACGCGGGGACGCACGGCG ATGCGCCGCTCCATTACAGCAATGACGGCGCCTCGTCGGCCGACTGCGAACTCGCTCCCTATATCGGACCGTGCGCGCTC ATCGACGTGCGCCATGCGCGCGGGCGGGTGGAGATTGGCGACATCGACTGGAGCTGCGTCGACGGCGCAGAGCGTGTCCT GCTGCGAACCTATGAACAATTTCCGCACGAAAAATGGGACAGCGATTTCACCGCCGTCGCTGCGGACGTGATCGAACGGT TTGGTGCGATGGGCGTCCGCCTGATCGGCACCGACGCCGCCTCGCTCGATCCCGAACAGTCGAAAACGCTCGACGCGCAT CAGGCGGTGAAGGCTGCCGACATGCGGATCCTGGAGGGGCTGGTGCTCGATGATGTGCCGCCCGGCCGCTACGAACTGAT TGCCCTGCCGCTGCGCATCGTCGGCGCCGATGCCAGCCCGGTGCGCGCCATTCTGAGGGAAATCGCATGA
Upstream 100 bases:
>100_bases TCAAGGCGCTCGATCTCAGCTTCTTTCCCGAACTCTGGTCGATGCGGACCGAAATGGTCGCGCCGCGCGAGGGTGGCGAC TATGCGGCAGGGGAACGCAA
Downstream 100 bases:
>100_bases CCGGCACGATGGCCGTCGCCGATGTGGTGTCGCTCGACGCGGGCGACCCGCTCGCGCCTTTTCGCGACCGCTTTCATCTG CGCGAAGGGCTGATCTATCT
Product: putative cyclase
Products: NA
Alternate protein names: KFA; N-formylkynurenine formamidase
Number of amino acids: Translated: 209; Mature: 208
Protein sequence:
>209_residues MSRIWDISQPLHAAVPVWPGEPAFSLHSHAVIGEGCPVNVGGMFTPLHAGTHGDAPLHYSNDGASSADCELAPYIGPCAL IDVRHARGRVEIGDIDWSCVDGAERVLLRTYEQFPHEKWDSDFTAVAADVIERFGAMGVRLIGTDAASLDPEQSKTLDAH QAVKAADMRILEGLVLDDVPPGRYELIALPLRIVGADASPVRAILREIA
Sequences:
>Translated_209_residues MSRIWDISQPLHAAVPVWPGEPAFSLHSHAVIGEGCPVNVGGMFTPLHAGTHGDAPLHYSNDGASSADCELAPYIGPCAL IDVRHARGRVEIGDIDWSCVDGAERVLLRTYEQFPHEKWDSDFTAVAADVIERFGAMGVRLIGTDAASLDPEQSKTLDAH QAVKAADMRILEGLVLDDVPPGRYELIALPLRIVGADASPVRAILREIA >Mature_208_residues SRIWDISQPLHAAVPVWPGEPAFSLHSHAVIGEGCPVNVGGMFTPLHAGTHGDAPLHYSNDGASSADCELAPYIGPCALI DVRHARGRVEIGDIDWSCVDGAERVLLRTYEQFPHEKWDSDFTAVAADVIERFGAMGVRLIGTDAASLDPEQSKTLDAHQ AVKAADMRILEGLVLDDVPPGRYELIALPLRIVGADASPVRAILREIA
Specific function: Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine
COG id: COG1878
COG function: function code R; Predicted metal-dependent hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the kynB family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): KYNB_SPHAL (Q1GTB8)
Other databases:
- EMBL: CP000356 - RefSeq: YP_616437.1 - ProteinModelPortal: Q1GTB8 - SMR: Q1GTB8 - GeneID: 4081862 - GenomeReviews: CP000356_GR - KEGG: sal:Sala_1390 - NMPDR: fig|317655.9.peg.1324 - HOGENOM: HBG686791 - OMA: CPVNVGR - BioCyc: SALA317655:SALA_1390-MONOMER - InterPro: IPR017484 - InterPro: IPR007325 - TIGRFAMs: TIGR03035
Pfam domain/function: PF04199 Cyclase
EC number: =3.5.1.9
Molecular weight: Translated: 22461; Mature: 22329
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRIWDISQPLHAAVPVWPGEPAFSLHSHAVIGEGCPVNVGGMFTPLHAGTHGDAPLHYS CCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEC NDGASSADCELAPYIGPCALIDVRHARGRVEIGDIDWSCVDGAERVLLRTYEQFPHEKWD CCCCCCCCCEECCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCHHCC SDFTAVAADVIERFGAMGVRLIGTDAASLDPEQSKTLDAHQAVKAADMRILEGLVLDDVP CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC PGRYELIALPLRIVGADASPVRAILREIA CCCEEEEEEEEEEECCCCHHHHHHHHHCC >Mature Secondary Structure SRIWDISQPLHAAVPVWPGEPAFSLHSHAVIGEGCPVNVGGMFTPLHAGTHGDAPLHYS CCCCCCCCCHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEC NDGASSADCELAPYIGPCALIDVRHARGRVEIGDIDWSCVDGAERVLLRTYEQFPHEKWD CCCCCCCCCEECCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCHHCC SDFTAVAADVIERFGAMGVRLIGTDAASLDPEQSKTLDAHQAVKAADMRILEGLVLDDVP CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC PGRYELIALPLRIVGADASPVRAILREIA CCCEEEEEEEEEEECCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA