Click here to switch to the map view.

The map label for this gene is ycjD [C]

Identifier: 103486723

GI number: 103486723

Start: 1285050

End: 1285577

Strand: Direct

Name: ycjD [C]

Synonym: Sala_1236

Alternate gene names: 103486723

Gene position: 1285050-1285577 (Clockwise)

Preceding gene: 103486722

Following gene: 103486724

Centisome position: 38.42

GC content: 62.5

Gene sequence:

>528_bases
ATGCCCGCGAGGGGCCAAAGCCCCTCTCCCCTTGCGGGAGAGGGGTTGGGGAGTGGGGTCCGCGCCGCGGCAGCGGCGCA
CAAGACTCTCTCCGAAGTTCTCGCTCGCAAAGCCCTGTTGCTGGACCGCGTCCGCCAAATGCGATCGAATCCCACTGATG
CCGAACGGCACCTATGGTCGATCCTCCGTGCTGGTCGTCTCGAAGGTCTGAGATGGCGGCGTCAGGAGGTCATCGACGAC
CGCTATATTGCTGATTTCCTCTGCTACGAGCATCGGTTGATCGTCGAGGCCGATGGAGGCCAGCATGGCGACAATCCTCA
TGATGCCGAGCGCGACACCTATCTGACCGCACAGGGCTTTCGCATCCTGCGCTTCTGGAACAACGACATCCTCGCCAACA
GCGAAGGCCTAGTCGCGAGCATCCTCGATGCCATCGATTCTCTTGGCGCGCAGACGCGCGCCGACCCCACACCCCAACCC
CTCTCCCGCAAGGGGAGAGGGGCTTTTGAAGGAGCCCATAATGGCTGA

Upstream 100 bases:

>100_bases
GGCAGCTTCGACCACCGCGCGATCGACGGGGCGGACGGGGCGCTCTTGATGAAGACGTTCAAGGAACTGGTGGAAAGCCC
GCTGGGGCTGGTGGCGTAAG

Downstream 100 bases:

>100_bases
CACCAACTATGACCTCATCGTCCTCGGCTCGGGCCCCGGCGGCTATGTCGCCGCGATCCGCGCGGCGCAGCTGGGGATGA
AGACCGCGATTGTCGAACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MPARGQSPSPLAGEGLGSGVRAAAAAHKTLSEVLARKALLLDRVRQMRSNPTDAERHLWSILRAGRLEGLRWRRQEVIDD
RYIADFLCYEHRLIVEADGGQHGDNPHDAERDTYLTAQGFRILRFWNNDILANSEGLVASILDAIDSLGAQTRADPTPQP
LSRKGRGAFEGAHNG

Sequences:

>Translated_175_residues
MPARGQSPSPLAGEGLGSGVRAAAAAHKTLSEVLARKALLLDRVRQMRSNPTDAERHLWSILRAGRLEGLRWRRQEVIDD
RYIADFLCYEHRLIVEADGGQHGDNPHDAERDTYLTAQGFRILRFWNNDILANSEGLVASILDAIDSLGAQTRADPTPQP
LSRKGRGAFEGAHNG
>Mature_174_residues
PARGQSPSPLAGEGLGSGVRAAAAAHKTLSEVLARKALLLDRVRQMRSNPTDAERHLWSILRAGRLEGLRWRRQEVIDDR
YIADFLCYEHRLIVEADGGQHGDNPHDAERDTYLTAQGFRILRFWNNDILANSEGLVASILDAIDSLGAQTRADPTPQPL
SRKGRGAFEGAHNG

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ycjD and H.influenzae HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=124, Percent_Identity=37.9032258064516, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 19272; Mature: 19141

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARGQSPSPLAGEGLGSGVRAAAAAHKTLSEVLARKALLLDRVRQMRSNPTDAERHLWS
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ILRAGRLEGLRWRRQEVIDDRYIADFLCYEHRLIVEADGGQHGDNPHDAERDTYLTAQGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCEEECCCE
RILRFWNNDILANSEGLVASILDAIDSLGAQTRADPTPQPLSRKGRGAFEGAHNG
EEEEEECCCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PARGQSPSPLAGEGLGSGVRAAAAAHKTLSEVLARKALLLDRVRQMRSNPTDAERHLWS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ILRAGRLEGLRWRRQEVIDDRYIADFLCYEHRLIVEADGGQHGDNPHDAERDTYLTAQGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCEEECCCE
RILRFWNNDILANSEGLVASILDAIDSLGAQTRADPTPQPLSRKGRGAFEGAHNG
EEEEEECCCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]