Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103486693

Identifier: 103486693

GI number: 103486693

Start: 1246052

End: 1246741

Strand: Reverse

Name: 103486693

Synonym: Sala_1205

Alternate gene names: NA

Gene position: 1246741-1246052 (Counterclockwise)

Preceding gene: 103486694

Following gene: 103486692

Centisome position: 37.27

GC content: 66.23

Gene sequence:

>690_bases
GTGACCGAAGCGCCCGGTTTCGATGAGGTTGTCGTCGGGCGTCGCTCGATCCGCGGCTTCCTCGACAAGCCCGTTTCCAA
AGAGCTGATCGCGGAAATCATCGCCGTGGCGATGCGCGCGCCGTCGTCGTTCAACAACCAGTGCTGGAACTTTTCGGTCG
TCACGGGCGCGCCGCTCGACGCCATCCGCCGCGGCAACACCGAGGGCGTCCTGGCGGGCAAGCCCGACAGCCGCGAGTTT
CGCCGTTTCGACAAGGTGCCCGACGCACATCGCGGTCGCCAGATCGAGATCGCCAAACAGCTCTTCGGCGCCATGGGCAT
CGCGCGCGACGACAAGGACGCGCGGCAGGACTGGGTGCTGCGCGGCTTTCGCCAGTTCGACGCGCCGGTCAGCATCGTCG
TCACCTATGACCGCGTCCTGCTGGGCAGCGACATCGCGCCCTTCGACTGCGGCGCGGTCACCAACGCGCTGGTCAACGCC
GCCTGGTCGCGCGGGCTGGGCTGCGTCATCAACAGCCAGGGCATCATGCAAAGCCCGGTGGTGCGCGAACATGCGCGCAT
CCCCGACGATCAGGTCATCATGATCTGCGTTGCGATGGGCTGGCCCGACGCCGATTTTCCGGCGAACGCGGTGGTGTCGA
ACCGCAAGAGCATCGAAGAGGCCGTGCGTTTCGTGGGGTTCGACGATTGA

Upstream 100 bases:

>100_bases
TCACCCCCGGCCCCGCGCATGACGAAGCGATGATGCGCGAGTTGACCAGCGCGCTCGTCGAAATCTGGGACCGGCTGGAA
TTGCAGCTCCAGAAGGCGGC

Downstream 100 bases:

>100_bases
TCGTTGGCGGCGATTGATACTTGTGCGAATCGAGTCGTCCGCTAGGCTCCCCTCCGCCCCGCGCGCTCCCCGACACAAAG
GTTTCCATGGCCGTTCAACG

Product: nitroreductase

Products: NA

Alternate protein names: Nitroreductase Family Protein; Oxidoreductase; P-Nitrobenzoate Reductase; NfnB Protein; Oxidoreductase Protein; Nitroreductase Family; NADH Dehydrogenase; Nitrobenzene Nitroreductase; Nitrobenzoate Nitroreductase; Nitrobenzoate Reductase

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTEAPGFDEVVVGRRSIRGFLDKPVSKELIAEIIAVAMRAPSSFNNQCWNFSVVTGAPLDAIRRGNTEGVLAGKPDSREF
RRFDKVPDAHRGRQIEIAKQLFGAMGIARDDKDARQDWVLRGFRQFDAPVSIVVTYDRVLLGSDIAPFDCGAVTNALVNA
AWSRGLGCVINSQGIMQSPVVREHARIPDDQVIMICVAMGWPDADFPANAVVSNRKSIEEAVRFVGFDD

Sequences:

>Translated_229_residues
MTEAPGFDEVVVGRRSIRGFLDKPVSKELIAEIIAVAMRAPSSFNNQCWNFSVVTGAPLDAIRRGNTEGVLAGKPDSREF
RRFDKVPDAHRGRQIEIAKQLFGAMGIARDDKDARQDWVLRGFRQFDAPVSIVVTYDRVLLGSDIAPFDCGAVTNALVNA
AWSRGLGCVINSQGIMQSPVVREHARIPDDQVIMICVAMGWPDADFPANAVVSNRKSIEEAVRFVGFDD
>Mature_228_residues
TEAPGFDEVVVGRRSIRGFLDKPVSKELIAEIIAVAMRAPSSFNNQCWNFSVVTGAPLDAIRRGNTEGVLAGKPDSREFR
RFDKVPDAHRGRQIEIAKQLFGAMGIARDDKDARQDWVLRGFRQFDAPVSIVVTYDRVLLGSDIAPFDCGAVTNALVNAA
WSRGLGCVINSQGIMQSPVVREHARIPDDQVIMICVAMGWPDADFPANAVVSNRKSIEEAVRFVGFDD

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25163; Mature: 25032

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEAPGFDEVVVGRRSIRGFLDKPVSKELIAEIIAVAMRAPSSFNNQCWNFSVVTGAPLD
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHH
AIRRGNTEGVLAGKPDSREFRRFDKVPDAHRGRQIEIAKQLFGAMGIARDDKDARQDWVL
HHHCCCCCCEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
RGFRQFDAPVSIVVTYDRVLLGSDIAPFDCGAVTNALVNAAWSRGLGCVINSQGIMQSPV
HHHHHHCCCEEEEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCH
VREHARIPDDQVIMICVAMGWPDADFPANAVVSNRKSIEEAVRFVGFDD
HHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TEAPGFDEVVVGRRSIRGFLDKPVSKELIAEIIAVAMRAPSSFNNQCWNFSVVTGAPLD
CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHH
AIRRGNTEGVLAGKPDSREFRRFDKVPDAHRGRQIEIAKQLFGAMGIARDDKDARQDWVL
HHHCCCCCCEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
RGFRQFDAPVSIVVTYDRVLLGSDIAPFDCGAVTNALVNAAWSRGLGCVINSQGIMQSPV
HHHHHHCCCEEEEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCH
VREHARIPDDQVIMICVAMGWPDADFPANAVVSNRKSIEEAVRFVGFDD
HHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA