| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yceI [C]
Identifier: 103486692
GI number: 103486692
Start: 1244700
End: 1245965
Strand: Reverse
Name: yceI [C]
Synonym: Sala_1204
Alternate gene names: 103486692
Gene position: 1245965-1244700 (Counterclockwise)
Preceding gene: 103486693
Following gene: 103486689
Centisome position: 37.25
GC content: 68.48
Gene sequence:
>1266_bases ATGGCCGTTCAACGCTATAGCTATACCGCGATCGCGCTCCACTGGCTGATCGCGCTGCTCCTCGCCTTTCAGGTCGCGCT CGGCTGGGCGCTCGAAGGCGATAACAGTCCCGAGCTGTTTCAGCGGTTCCAGCTTCACAAATCGGTCGGCATCGCGATCC TGCTGCTCAGCCTCCTCCGCCTTGCGACCCGTTTCGTCATGCCGCGCCCGCCGGCGTCCGACGGGCCGACATGGACGCGC GCGCTGGCAGGCATCGTCCACAGCCTTTTCTATGTCGTGATGATCGTCGGCCCGCTCACCGGCTGGCTGCTCGTATCGAC GGCGAAGATTCAGGTGCCGACCTTGCTGTTCGGTATGGTGCCCTGGCCGCACCTTCCCGTCGGTCGCGGCTGGCATGAGC CTGCCGAGGTGATCCACGAGACAATGGCGTGGCTGGCGATCGGGCTGTTCCTGCTGCATGTCGCGGGCGCGCTCCGTCAC CAGTGGTTGCTCGGCAAGCCCGAGCTTCAGCGGATGATCCCGTCGGCGCGCGGCAAAGCCGTGGGGGCCGTCTTGATCGC ACTGGCGTTCGTCGGCGGCGCCTTCGCCGTGGGTTCAAGCGTCTATCCCGACCGCGACCGGGCCGCGCCCGCCGAACCGG CCATGTCCAATACAGCACAGACCGCGCCCGTCGCGCCTCCCGCGCCGATCGAGGCCGAAAAGACGGAAGCGGACGAAGCC CCTGACAGCGATCCCGCTGCCGAGCCCGAAGACACGGCAGAGCCCCTCGCCGACTGGTCGGTGGCGCCGGGCGGGCGCCT TGGCTTCACCGCGCGCTGGAATGGCGAGGCGGTCGAGGGGCGCTTCGATCGCTGGCGCGCCGACATCCGGTTCAGTCCCG ACCATCTCACGGGGTCGCGCATCAAGGTGACGGTCGACCTCGCCTCGGCCGACACCGGCGACGGCCAGCGCGACGATTCG CTGAAGGGCAGCGATTTCTTCGATACCGCCGCACATCCCAGCGCAATCTTCACCGCGCGCGACGTTCGTAAGCTTGGTGG TGACCGCTATGCGGCGCGCGGCACGCTCGAGCTGCGCGGCGCCGCCAGGCCGGTGACGCTGCGCTTCACGCTGGGGATCG AGGGCGACCGCGCGCGCGTCAACGGCACGGCGCGGATCGACCGCACGGCGTTCGGGGTCGGTCAGGGCGAATGGGCAGCG ACCGATGCGATTCCGGCGGAAGTCGATATCGCCTTTGCCTTCACTGCGACGCGGCAGTCAGGCTGA
Upstream 100 bases:
>100_bases GGTTCGACGATTGATCGTTGGCGGCGATTGATACTTGTGCGAATCGAGTCGTCCGCTAGGCTCCCCTCCGCCCCGCGCGC TCCCCGACACAAAGGTTTCC
Downstream 100 bases:
>100_bases CGGGGGCCGCGCAACAATCCGGTCCGCACCCGCCACGCTTCGACAAGAGAAGGGAATTGAGGGGGTGCCGCCATTTGCAG GCCGCCAGGGCGGAATGTCG
Product: YceI
Products: NA
Alternate protein names: Cytochrome B; Ycei Family Protein; YceI Like Family; YceI Like Family Protein; Cytochrome; YciI Family Periplasmic Protein; YceI-Like Family Protein; YceI/Cytochrome; Phage Head-Tail Adaptor; Signal Peptide Protein; Ycei-Like Protein
Number of amino acids: Translated: 421; Mature: 420
Protein sequence:
>421_residues MAVQRYSYTAIALHWLIALLLAFQVALGWALEGDNSPELFQRFQLHKSVGIAILLLSLLRLATRFVMPRPPASDGPTWTR ALAGIVHSLFYVVMIVGPLTGWLLVSTAKIQVPTLLFGMVPWPHLPVGRGWHEPAEVIHETMAWLAIGLFLLHVAGALRH QWLLGKPELQRMIPSARGKAVGAVLIALAFVGGAFAVGSSVYPDRDRAAPAEPAMSNTAQTAPVAPPAPIEAEKTEADEA PDSDPAAEPEDTAEPLADWSVAPGGRLGFTARWNGEAVEGRFDRWRADIRFSPDHLTGSRIKVTVDLASADTGDGQRDDS LKGSDFFDTAAHPSAIFTARDVRKLGGDRYAARGTLELRGAARPVTLRFTLGIEGDRARVNGTARIDRTAFGVGQGEWAA TDAIPAEVDIAFAFTATRQSG
Sequences:
>Translated_421_residues MAVQRYSYTAIALHWLIALLLAFQVALGWALEGDNSPELFQRFQLHKSVGIAILLLSLLRLATRFVMPRPPASDGPTWTR ALAGIVHSLFYVVMIVGPLTGWLLVSTAKIQVPTLLFGMVPWPHLPVGRGWHEPAEVIHETMAWLAIGLFLLHVAGALRH QWLLGKPELQRMIPSARGKAVGAVLIALAFVGGAFAVGSSVYPDRDRAAPAEPAMSNTAQTAPVAPPAPIEAEKTEADEA PDSDPAAEPEDTAEPLADWSVAPGGRLGFTARWNGEAVEGRFDRWRADIRFSPDHLTGSRIKVTVDLASADTGDGQRDDS LKGSDFFDTAAHPSAIFTARDVRKLGGDRYAARGTLELRGAARPVTLRFTLGIEGDRARVNGTARIDRTAFGVGQGEWAA TDAIPAEVDIAFAFTATRQSG >Mature_420_residues AVQRYSYTAIALHWLIALLLAFQVALGWALEGDNSPELFQRFQLHKSVGIAILLLSLLRLATRFVMPRPPASDGPTWTRA LAGIVHSLFYVVMIVGPLTGWLLVSTAKIQVPTLLFGMVPWPHLPVGRGWHEPAEVIHETMAWLAIGLFLLHVAGALRHQ WLLGKPELQRMIPSARGKAVGAVLIALAFVGGAFAVGSSVYPDRDRAAPAEPAMSNTAQTAPVAPPAPIEAEKTEADEAP DSDPAAEPEDTAEPLADWSVAPGGRLGFTARWNGEAVEGRFDRWRADIRFSPDHLTGSRIKVTVDLASADTGDGQRDDSL KGSDFFDTAAHPSAIFTARDVRKLGGDRYAARGTLELRGAARPVTLRFTLGIEGDRARVNGTARIDRTAFGVGQGEWAAT DAIPAEVDIAFAFTATRQSG
Specific function: Unknown
COG id: COG2353
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787295, Length=148, Percent_Identity=31.0810810810811, Blast_Score=65, Evalue=9e-12,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45298; Mature: 45167
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVQRYSYTAIALHWLIALLLAFQVALGWALEGDNSPELFQRFQLHKSVGIAILLLSLLR CCCCCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH LATRFVMPRPPASDGPTWTRALAGIVHSLFYVVMIVGPLTGWLLVSTAKIQVPTLLFGMV HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEHHHHHHHCC PWPHLPVGRGWHEPAEVIHETMAWLAIGLFLLHVAGALRHQWLLGKPELQRMIPSARGKA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHHCCHH VGAVLIALAFVGGAFAVGSSVYPDRDRAAPAEPAMSNTAQTAPVAPPAPIEAEKTEADEA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PDSDPAAEPEDTAEPLADWSVAPGGRLGFTARWNGEAVEGRFDRWRADIRFSPDHLTGSR CCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHEECEEECCCCCCCCE IKVTVDLASADTGDGQRDDSLKGSDFFDTAAHPSAIFTARDVRKLGGDRYAARGTLELRG EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCEEEECC AARPVTLRFTLGIEGDRARVNGTARIDRTAFGVGQGEWAATDAIPAEVDIAFAFTATRQS CCCCEEEEEEEECCCCCEEECCCEEECHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCC G C >Mature Secondary Structure AVQRYSYTAIALHWLIALLLAFQVALGWALEGDNSPELFQRFQLHKSVGIAILLLSLLR CCCCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH LATRFVMPRPPASDGPTWTRALAGIVHSLFYVVMIVGPLTGWLLVSTAKIQVPTLLFGMV HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEHHHHHHHCC PWPHLPVGRGWHEPAEVIHETMAWLAIGLFLLHVAGALRHQWLLGKPELQRMIPSARGKA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHHCCHH VGAVLIALAFVGGAFAVGSSVYPDRDRAAPAEPAMSNTAQTAPVAPPAPIEAEKTEADEA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PDSDPAAEPEDTAEPLADWSVAPGGRLGFTARWNGEAVEGRFDRWRADIRFSPDHLTGSR CCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHEECEEECCCCCCCCE IKVTVDLASADTGDGQRDDSLKGSDFFDTAAHPSAIFTARDVRKLGGDRYAARGTLELRG EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCEEEECC AARPVTLRFTLGIEGDRARVNGTARIDRTAFGVGQGEWAATDAIPAEVDIAFAFTATRQS CCCCEEEEEEEECCCCCEEECCCEEECHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCC G C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA