Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103486689

Identifier: 103486689

GI number: 103486689

Start: 1241820

End: 1243028

Strand: Reverse

Name: 103486689

Synonym: Sala_1201

Alternate gene names: NA

Gene position: 1243028-1241820 (Counterclockwise)

Preceding gene: 103486692

Following gene: 103486688

Centisome position: 37.16

GC content: 59.64

Gene sequence:

>1209_bases
ATGAGCAAGGTTCTGGTGATCGGCGCAGGCGGCGTCGGTTCGGTCGCGGTGCACAAGATGGCGATGAACTCCGACATCTT
TCCCGACATCACCCTCGCCAGCCGCCGCAAGTTCAAGTGCGACGCGATTGCCGGGTCGGTGAAGGCGCGTACCGGCGTCA
CGATCAAGACCGCCGAGGTCGACGCCGACCATATCGACGCGACCGCGGCGCTGATCCGTCAGATTGGCGCCACGCACGTC
GTCAATCTTGCGCTGCCTTATCAGGATCTGACGATAATGGAGGCGTGCCTTTCGACCGGCGCGCATTATCTCGACACCGC
AAATTACGAACCGCGCGACGAGGCGAAGTTCGAATATCACTGGCAATGGGCCTATCACGACCGCTTCAAGGACGCGGGCC
TGATGGCGCTGCTCGGCTCGGGCTTCGACCCCGGCGTGACGAGCGTGTTCACGACCTGGCTTCGCAAGCATCATTTCGAC
CGCATCGACACGCTCGACATCCTCGACTGCAACGGCGGCGATCACGGCCAGCATTTCGCGACCAACTTCAACCCCGAAAT
CAACATTCGTGAAGTCACCGCGGTCGCGCGCCACTGGGAAAATGGCGACTGGGTCGAAACGCCCCCGATGTCGGTGAAGC
AGCAGTTCCATTTCGAAGGCGTGGGGCCGAAGAATATGTACCTCATGTATCATGAGGAGATCGAAAGCCTGAAAACGCAT
TTGCCCGAAATCAAGCGCATCCGTTTCTGGATGACCTTTGGCGACGCTTATATCCAGCACCTTACCGTGCTCCAGAATGT
CGGCATGACGCGGATCGATCCGGTGGTCTACGAGGGCAAGGAGATCGTTCCGCTCCAGTTCCTCAAAGCCGTGCTCCCCG
AACCGGCGAGCCTTGGCGGGACGACGAAAGGCAAGACCAATATCGGCGTCATCGCGACCGGCCTTGGCAAGGATGGCAAG
GAAAAGACGCTCTACCTCTACAATATCTGCGACCATGAGGATGCCTATGCAGAAACGGGCAATCAGGCGGTCAGCTACAC
CACCGGCGTTCCCGCGATGATCGGCGCCGCAATGATGGTCACCGGTACGTGGGGCGGCGCGGGCGTCTTCAACATGGAAC
AGATGGACCCCGATCCCTTCATGGACATGCTGATGAAACATGGTCTGCCGTGGCAGGTGAAGGAACTGGACGCGCCGCTC
GATTTCTGA

Upstream 100 bases:

>100_bases
GGGCGAGCGCAGGATCGGGGCTTTGCTGTATCATGGCTTCGTCCTATAGGGCCGGGCATACAAGACAAGGCGGCAACGGT
CCGCGACAGGAGATTTTTCG

Downstream 100 bases:

>100_bases
CGACCTGCCGCCGCTATCGTCATCCCCGCGAAGGCCGGGATCGCACCCCATGGGTTGGACATCTCGGCGAGATCCCGGCC
TTTGCCGGGATGACGACATC

Product: saccharopine dehydrogenase

Products: L-lysine; 2-oxoglutarate; NADH; H+

Alternate protein names: Carboxynorspermidine Dehydrogenase; Saccharopine Dehydrogenase-Like Protein; Carboxynorspermide Hydratase; Saccharopine Dehydrogenase Family Protein; Acyl Carrier Protein

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MSKVLVIGAGGVGSVAVHKMAMNSDIFPDITLASRRKFKCDAIAGSVKARTGVTIKTAEVDADHIDATAALIRQIGATHV
VNLALPYQDLTIMEACLSTGAHYLDTANYEPRDEAKFEYHWQWAYHDRFKDAGLMALLGSGFDPGVTSVFTTWLRKHHFD
RIDTLDILDCNGGDHGQHFATNFNPEINIREVTAVARHWENGDWVETPPMSVKQQFHFEGVGPKNMYLMYHEEIESLKTH
LPEIKRIRFWMTFGDAYIQHLTVLQNVGMTRIDPVVYEGKEIVPLQFLKAVLPEPASLGGTTKGKTNIGVIATGLGKDGK
EKTLYLYNICDHEDAYAETGNQAVSYTTGVPAMIGAAMMVTGTWGGAGVFNMEQMDPDPFMDMLMKHGLPWQVKELDAPL
DF

Sequences:

>Translated_402_residues
MSKVLVIGAGGVGSVAVHKMAMNSDIFPDITLASRRKFKCDAIAGSVKARTGVTIKTAEVDADHIDATAALIRQIGATHV
VNLALPYQDLTIMEACLSTGAHYLDTANYEPRDEAKFEYHWQWAYHDRFKDAGLMALLGSGFDPGVTSVFTTWLRKHHFD
RIDTLDILDCNGGDHGQHFATNFNPEINIREVTAVARHWENGDWVETPPMSVKQQFHFEGVGPKNMYLMYHEEIESLKTH
LPEIKRIRFWMTFGDAYIQHLTVLQNVGMTRIDPVVYEGKEIVPLQFLKAVLPEPASLGGTTKGKTNIGVIATGLGKDGK
EKTLYLYNICDHEDAYAETGNQAVSYTTGVPAMIGAAMMVTGTWGGAGVFNMEQMDPDPFMDMLMKHGLPWQVKELDAPL
DF
>Mature_401_residues
SKVLVIGAGGVGSVAVHKMAMNSDIFPDITLASRRKFKCDAIAGSVKARTGVTIKTAEVDADHIDATAALIRQIGATHVV
NLALPYQDLTIMEACLSTGAHYLDTANYEPRDEAKFEYHWQWAYHDRFKDAGLMALLGSGFDPGVTSVFTTWLRKHHFDR
IDTLDILDCNGGDHGQHFATNFNPEINIREVTAVARHWENGDWVETPPMSVKQQFHFEGVGPKNMYLMYHEEIESLKTHL
PEIKRIRFWMTFGDAYIQHLTVLQNVGMTRIDPVVYEGKEIVPLQFLKAVLPEPASLGGTTKGKTNIGVIATGLGKDGKE
KTLYLYNICDHEDAYAETGNQAVSYTTGVPAMIGAAMMVTGTWGGAGVFNMEQMDPDPFMDMLMKHGLPWQVKELDAPLD
F

Specific function: Unknown

COG id: COG1748

COG function: function code E; Saccharopine dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.5.1.7

Molecular weight: Translated: 44596; Mature: 44465

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVLVIGAGGVGSVAVHKMAMNSDIFPDITLASRRKFKCDAIAGSVKARTGVTIKTAEV
CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHCCCCCCCCCEEEEECC
DADHIDATAALIRQIGATHVVNLALPYQDLTIMEACLSTGAHYLDTANYEPRDEAKFEYH
CCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEE
WQWAYHDRFKDAGLMALLGSGFDPGVTSVFTTWLRKHHFDRIDTLDILDCNGGDHGQHFA
EEEEECCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC
TNFNPEINIREVTAVARHWENGDWVETPPMSVKQQFHFEGVGPKNMYLMYHEEIESLKTH
CCCCCCCCHHHHHHHHHHCCCCCEECCCCHHHHHHEEECCCCCCCEEEEEHHHHHHHHHH
LPEIKRIRFWMTFGDAYIQHLTVLQNVGMTRIDPVVYEGKEIVPLQFLKAVLPEPASLGG
CCHHHEEEEEEEHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHCCCCHHCCC
TTKGKTNIGVIATGLGKDGKEKTLYLYNICDHEDAYAETGNQAVSYTTGVPAMIGAAMMV
CCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCHHHHHCCCCEEEEECCCHHHHCCEEEE
TGTWGGAGVFNMEQMDPDPFMDMLMKHGLPWQVKELDAPLDF
EECCCCCCCCCHHCCCCCHHHHHHHHCCCCEEEHHCCCCCCC
>Mature Secondary Structure 
SKVLVIGAGGVGSVAVHKMAMNSDIFPDITLASRRKFKCDAIAGSVKARTGVTIKTAEV
CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHCCCCCCCCCEEEEECC
DADHIDATAALIRQIGATHVVNLALPYQDLTIMEACLSTGAHYLDTANYEPRDEAKFEYH
CCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEE
WQWAYHDRFKDAGLMALLGSGFDPGVTSVFTTWLRKHHFDRIDTLDILDCNGGDHGQHFA
EEEEECCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC
TNFNPEINIREVTAVARHWENGDWVETPPMSVKQQFHFEGVGPKNMYLMYHEEIESLKTH
CCCCCCCCHHHHHHHHHHCCCCCEECCCCHHHHHHEEECCCCCCCEEEEEHHHHHHHHHH
LPEIKRIRFWMTFGDAYIQHLTVLQNVGMTRIDPVVYEGKEIVPLQFLKAVLPEPASLGG
CCHHHEEEEEEEHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHCCCCHHCCC
TTKGKTNIGVIATGLGKDGKEKTLYLYNICDHEDAYAETGNQAVSYTTGVPAMIGAAMMV
CCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCHHHHHCCCCEEEEECCCHHHHCCEEEE
TGTWGGAGVFNMEQMDPDPFMDMLMKHGLPWQVKELDAPLDF
EECCCCCCCCCHHCCCCCHHHHHHHHCCCCEEEHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N6-(L-1,3-dicarboxypropyl)-L-lysine; NAD+; H2O

Specific reaction: N6-(L-1,3-dicarboxypropyl)-L-lysine + NAD+ + H2O = L-lysine + 2-oxoglutarate + NADH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA