| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is puuA [H]
Identifier: 103486609
GI number: 103486609
Start: 1157794
End: 1159140
Strand: Reverse
Name: puuA [H]
Synonym: Sala_1121
Alternate gene names: 103486609
Gene position: 1159140-1157794 (Counterclockwise)
Preceding gene: 103486611
Following gene: 103486608
Centisome position: 34.65
GC content: 61.1
Gene sequence:
>1347_bases ATGTCAGTCAATCTGGAACAATGGATCAGCGAGCACAAGATCGACGAAGTCGAATGTATCGTCCCCGACATCAATGGGGT TCAGCGCGGCAAGGTGTTGCCGGCGCGCAAGTTTCTCACCTCGGTCAAGGACAAGACGCTGCGCATTCCCGGCAGCGTCT TCATCTGCACGATCGACGGTCATTACCCCGAGGACATCGACGATGTCTGGGACAAGGACCCGGACAAGATATTGATCGCC GATCCCGACACGATCTGCGTCGCGCCGGGCTTTACCTCGCCGACCGCTTTCGTCATCGCCGACGCCTTCAACGGCGACGG GACCGAGGTCGACATCGCGCCGCGCACGATCCTCAAAAAAGTGCTGGGCCTCTACGAAGACAGGGGCTGGAAACCGATCA TTGCGCCCGAGGTGGAGTTTTACCTCGTTTCGCAGAACACCGATCCCGATTTCCCGCTGACTCCGCCCACCGGCCAGTCG GGCCGTGCCGAAACGGCGAGCCAGCCCTATGGGCTGGAGGCGATGAACGAATATGAAGACATCATCGATCATATCTATGA CGATTGCGAGCTGATGGGGCTCAATATCGACACGATGATTCACGAAATGGGCGCCGCGCAGCTGGAGGTGAACTTCAACC ATGGCGATCCGCTGCGGCTCGCCGACGAGGTCTTCCTGTTCAAACGCGTCGTCCGCAATGTGGCGCGGCAACATGACGTC TATGCCACTTTCATGGCGAACCCGATGGCGGGCCAGCCAGGCAGCGCGATGCACATCCATCAGTCGGTCATCGATGCCGA TACGGGTCGCAACCTGTTCGCGACCGCGAATGGCCGCGACAGCGCCGCCTTTCGGTCCTTTGTCGCGGGGCTCGTCCGTT TCATGCCGCAAATTGCGCCGCTCTGGGCGCCCAATGTGAACAGCTTTCGCCGGATGCGCCCCGACAGCGCGGCGCCGATC AACGTCCAGTGGGGCGCCGACAACCGCTCGTGCGGTTTTCGTATCCCGGTGTCCGACAAGCACAACCGCCGCGTCGAAAA CCGCCTGCCCGGCGCCGACAGCAATCCCTATCTCGCGATCGCCGCGTCGCTCGTATGCGGCTATATCGGCATGGTCGACC GGATGGTCCCGCCCAAGCCGATCACCGGCAGCGCCTATAATCGCGCACGCACCCTGCCGCGCACGCTGGAGGCCGCGCTC GACCGTTTCGCCTCGTGCAAAAAGGTCCGCAACCTGCTCGGCGACGATTTCTTCGAGATTTTCTATGCCGTGAAGGATTA TGAGCTGTTCAATTACCAGTCGGTGGTGTCGAGCTGGGAGCGCGAACATCTGCTGATGCGGGTCTGA
Upstream 100 bases:
>100_bases GCTGGCAATGGACAAAACCGGCCCTCTGGCGCTTCACCCGACTTCACGATAGGCTGTCCGCTCCACAAACGGGCCGGCTC CTCGGCCCAATCGGGGGCGC
Downstream 100 bases:
>100_bases ACCGCCGATGATATTCTGCCCATCCTTCCCGTTCGCGTCGAGCGAGGTCGAGACGCCCATCGCGACGGCGCGGCGTTTCG ACTTCGCTCGACGCGAGCCG
Product: glutamate--ammonia ligase
Products: NA
Alternate protein names: Gamma-Glu-Put synthetase; Glutamate--putrescine ligase [H]
Number of amino acids: Translated: 448; Mature: 447
Protein sequence:
>448_residues MSVNLEQWISEHKIDEVECIVPDINGVQRGKVLPARKFLTSVKDKTLRIPGSVFICTIDGHYPEDIDDVWDKDPDKILIA DPDTICVAPGFTSPTAFVIADAFNGDGTEVDIAPRTILKKVLGLYEDRGWKPIIAPEVEFYLVSQNTDPDFPLTPPTGQS GRAETASQPYGLEAMNEYEDIIDHIYDDCELMGLNIDTMIHEMGAAQLEVNFNHGDPLRLADEVFLFKRVVRNVARQHDV YATFMANPMAGQPGSAMHIHQSVIDADTGRNLFATANGRDSAAFRSFVAGLVRFMPQIAPLWAPNVNSFRRMRPDSAAPI NVQWGADNRSCGFRIPVSDKHNRRVENRLPGADSNPYLAIAASLVCGYIGMVDRMVPPKPITGSAYNRARTLPRTLEAAL DRFASCKKVRNLLGDDFFEIFYAVKDYELFNYQSVVSSWEREHLLMRV
Sequences:
>Translated_448_residues MSVNLEQWISEHKIDEVECIVPDINGVQRGKVLPARKFLTSVKDKTLRIPGSVFICTIDGHYPEDIDDVWDKDPDKILIA DPDTICVAPGFTSPTAFVIADAFNGDGTEVDIAPRTILKKVLGLYEDRGWKPIIAPEVEFYLVSQNTDPDFPLTPPTGQS GRAETASQPYGLEAMNEYEDIIDHIYDDCELMGLNIDTMIHEMGAAQLEVNFNHGDPLRLADEVFLFKRVVRNVARQHDV YATFMANPMAGQPGSAMHIHQSVIDADTGRNLFATANGRDSAAFRSFVAGLVRFMPQIAPLWAPNVNSFRRMRPDSAAPI NVQWGADNRSCGFRIPVSDKHNRRVENRLPGADSNPYLAIAASLVCGYIGMVDRMVPPKPITGSAYNRARTLPRTLEAAL DRFASCKKVRNLLGDDFFEIFYAVKDYELFNYQSVVSSWEREHLLMRV >Mature_447_residues SVNLEQWISEHKIDEVECIVPDINGVQRGKVLPARKFLTSVKDKTLRIPGSVFICTIDGHYPEDIDDVWDKDPDKILIAD PDTICVAPGFTSPTAFVIADAFNGDGTEVDIAPRTILKKVLGLYEDRGWKPIIAPEVEFYLVSQNTDPDFPLTPPTGQSG RAETASQPYGLEAMNEYEDIIDHIYDDCELMGLNIDTMIHEMGAAQLEVNFNHGDPLRLADEVFLFKRVVRNVARQHDVY ATFMANPMAGQPGSAMHIHQSVIDADTGRNLFATANGRDSAAFRSFVAGLVRFMPQIAPLWAPNVNSFRRMRPDSAAPIN VQWGADNRSCGFRIPVSDKHNRRVENRLPGADSNPYLAIAASLVCGYIGMVDRMVPPKPITGSAYNRARTLPRTLEAALD RFASCKKVRNLLGDDFFEIFYAVKDYELFNYQSVVSSWEREHLLMRV
Specific function: Involved in the breakdown of putrescine via the biosynthesis of gamma-L-glutamylputrescine [H]
COG id: COG0174
COG function: function code E; Glutamine synthetase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glutamine synthetase family [H]
Homologues:
Organism=Homo sapiens, GI221307485, Length=443, Percent_Identity=24.3792325056433, Blast_Score=121, Evalue=2e-27, Organism=Escherichia coli, GI87081870, Length=444, Percent_Identity=32.6576576576577, Blast_Score=233, Evalue=2e-62, Organism=Escherichia coli, GI1790301, Length=430, Percent_Identity=27.6744186046512, Blast_Score=126, Evalue=3e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008147 - InterPro: IPR014746 - InterPro: IPR008146 [H]
Pfam domain/function: PF00120 Gln-synt_C [H]
EC number: =6.3.1.11 [H]
Molecular weight: Translated: 50111; Mature: 49980
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVNLEQWISEHKIDEVECIVPDINGVQRGKVLPARKFLTSVKDKTLRIPGSVFICTIDG CCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEECCCCEEEEEECC HYPEDIDDVWDKDPDKILIADPDTICVAPGFTSPTAFVIADAFNGDGTEVDIAPRTILKK CCCCCHHHHHCCCCCEEEEECCCEEEEECCCCCCCEEEEEEEECCCCCEEECCHHHHHHH VLGLYEDRGWKPIIAPEVEFYLVSQNTDPDFPLTPPTGQSGRAETASQPYGLEAMNEYED HHHHHHCCCCCCEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH IIDHIYDDCELMGLNIDTMIHEMGAAQLEVNFNHGDPLRLADEVFLFKRVVRNVARQHDV HHHHHHCCCEEECCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCE YATFMANPMAGQPGSAMHIHQSVIDADTGRNLFATANGRDSAAFRSFVAGLVRFMPQIAP EEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCC LWAPNVNSFRRMRPDSAAPINVQWGADNRSCGFRIPVSDKHNRRVENRLPGADSNPYLAI CCCCCHHHHHHCCCCCCCCEEEEECCCCCCCCEECCCCCCCCCHHHHCCCCCCCCCHHHH AASLVCGYIGMVDRMVPPKPITGSAYNRARTLPRTLEAALDRFASCKKVRNLLGDDFFEI HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHH FYAVKDYELFNYQSVVSSWEREHLLMRV HHHHHCCHHHHHHHHHHHHHHHHHEECC >Mature Secondary Structure SVNLEQWISEHKIDEVECIVPDINGVQRGKVLPARKFLTSVKDKTLRIPGSVFICTIDG CCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEECCCCEEEEEECC HYPEDIDDVWDKDPDKILIADPDTICVAPGFTSPTAFVIADAFNGDGTEVDIAPRTILKK CCCCCHHHHHCCCCCEEEEECCCEEEEECCCCCCCEEEEEEEECCCCCEEECCHHHHHHH VLGLYEDRGWKPIIAPEVEFYLVSQNTDPDFPLTPPTGQSGRAETASQPYGLEAMNEYED HHHHHHCCCCCCEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH IIDHIYDDCELMGLNIDTMIHEMGAAQLEVNFNHGDPLRLADEVFLFKRVVRNVARQHDV HHHHHHCCCEEECCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCE YATFMANPMAGQPGSAMHIHQSVIDADTGRNLFATANGRDSAAFRSFVAGLVRFMPQIAP EEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCC LWAPNVNSFRRMRPDSAAPINVQWGADNRSCGFRIPVSDKHNRRVENRLPGADSNPYLAI CCCCCHHHHHHCCCCCCCCEEEEECCCCCCCCEECCCCCCCCCHHHHCCCCCCCCCHHHH AASLVCGYIGMVDRMVPPKPITGSAYNRARTLPRTLEAALDRFASCKKVRNLLGDDFFEI HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHH FYAVKDYELFNYQSVVSSWEREHLLMRV HHHHHCCHHHHHHHHHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]