| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486579
Identifier: 103486579
GI number: 103486579
Start: 1117927
End: 1119258
Strand: Reverse
Name: 103486579
Synonym: Sala_1090
Alternate gene names: NA
Gene position: 1119258-1117927 (Counterclockwise)
Preceding gene: 103486580
Following gene: 103486570
Centisome position: 33.46
GC content: 65.69
Gene sequence:
>1332_bases ATGATCCGCCGCCGCATCGCCCGCTCATTCGTTGCCGTTCTGCTCACCTGCACGCCGCTCTTCGCTGCGGCACCGGCCCT CGCGCATCAATCGCCCGAGATGGCGGCGGCGGCCGACACCGCTTTTGCGCGGCGCGCCGACCAGCTTGTCGACCTGATCG CGGGGCGCATCGCCTTTGCCGACTATTTCGACGCCGGTTTCCAAAAAGCATTGCCCGAGGCGCAGTTCCGCGCGGTCACT GCGAACCTGATCGCCCAATATGGTGCGCCGGTCGCGGTGGACGGCGCGACGTCGTCCAACGGCCTGTCGGGCACCGTCCG CCTGCGCTTTGAAAAGGGCGTGGCGACCGTGCTACTCGACGTCGCAGCGGGGGCGGACGAAAAAGTCGTCGGGCTTCGGA TCACCGACTTCACCATGGCGGACGACAGTTTCGACAAGGTCGCGGCCGAACTGGCCGCGCTGCCGGGTCACACCGGCTTT CTCGTCGCCGAGCTCGACGGCGGCGGCATCAGAAAAATCGCAGCGGCGAACAGCGAGCGCCAGTTCGCAATCGGGTCGAC CTTCAAACTCTATATATTGGACGAACTGGCGGCGCAGGTCGCCGCGGGCAAGCGCAGATGGTCCGACGTCGTGCCTTTGA CGCACGCCAGCTTTTCGTCGGCGGGCACGGCCGGCTGGCCGAGGGATATGCCGGTGACGCTCCAGACGCTCGCCAACTGG ATGATCTCGGTCAGCGATAATGGCGCGACCGACACGCTGATCCACCTGCTCGGCCGCGAGGCGATCGAGGCGCGGATGAA GGCGGCGGGGCACAGCGACCCGTCGCGCAACATCCCCTTTCTGACCACGGTCGAGGCGTTCGCGCTCAAGGGCAATAATT TCGAGCGCGAGCGCGCGGCCTTCGTCGGCGCGAGCGATGCCGATCAAAGAAGACTGCTCGATGTTAACGCCGACAAGATG GTTCTGGCCAATGTTGACGGCGTCAGCTTTGCGGGCGGCCCGCGCTTCATCGACAGCCTCGAATGGTTCGCCAGCCCGTC CGATGTTGCGCGGCTGATGATCGACCTGCGCGCCCGGCAATCACCGGAAGCGATGGCCGCGATGGCGATCAACAATGGCG TCGGTCCGGCCGCCGCCGCCGAATGGTCATGGCTTGGCTACAAGGGCGGCTCGGAAACCGGCGTCCTGTCGATGAGCCTG CTCGGCCAGCGCAAGGGCGATGACAAATATGTCGTCGTCACGGCCAGCTGGAACAATCCCGACGCGGCGGTCGCCACCGA AACGATGGTCGCGCTGATCAAGCGCCTGCTGGCGCTTGCCGCCAAAGATTAG
Upstream 100 bases:
>100_bases ATCCAGGCCAATGCCGCCAGCCTCGACGAGGCCGCGATCGACGCCTAGCGCCGATGATTCCGCCGTGGCGGAAGGCGCGC GAAATGGGGAGAATGATACC
Downstream 100 bases:
>100_bases AAGCGGGGATTCTCACCCAAGACTTTGTCGGCCAGTTGCATATTCTCGGTCCGAACCATGTCTGGAATCAGGATCGCATC GATAATCCACCAAATACCCA
Product: putative beta-lactamase
Products: NA
Alternate protein names: Beta Lactamase-Related Protein; Lipoprotein LpqF; Beta-Lactamase Related Protein; Beta-Lactamase-Like Protein; Probale Secreted Protein; Beta-Lactamase Class A-Like Protein; LpqF Protein
Number of amino acids: Translated: 443; Mature: 443
Protein sequence:
>443_residues MIRRRIARSFVAVLLTCTPLFAAAPALAHQSPEMAAAADTAFARRADQLVDLIAGRIAFADYFDAGFQKALPEAQFRAVT ANLIAQYGAPVAVDGATSSNGLSGTVRLRFEKGVATVLLDVAAGADEKVVGLRITDFTMADDSFDKVAAELAALPGHTGF LVAELDGGGIRKIAAANSERQFAIGSTFKLYILDELAAQVAAGKRRWSDVVPLTHASFSSAGTAGWPRDMPVTLQTLANW MISVSDNGATDTLIHLLGREAIEARMKAAGHSDPSRNIPFLTTVEAFALKGNNFERERAAFVGASDADQRRLLDVNADKM VLANVDGVSFAGGPRFIDSLEWFASPSDVARLMIDLRARQSPEAMAAMAINNGVGPAAAAEWSWLGYKGGSETGVLSMSL LGQRKGDDKYVVVTASWNNPDAAVATETMVALIKRLLALAAKD
Sequences:
>Translated_443_residues MIRRRIARSFVAVLLTCTPLFAAAPALAHQSPEMAAAADTAFARRADQLVDLIAGRIAFADYFDAGFQKALPEAQFRAVT ANLIAQYGAPVAVDGATSSNGLSGTVRLRFEKGVATVLLDVAAGADEKVVGLRITDFTMADDSFDKVAAELAALPGHTGF LVAELDGGGIRKIAAANSERQFAIGSTFKLYILDELAAQVAAGKRRWSDVVPLTHASFSSAGTAGWPRDMPVTLQTLANW MISVSDNGATDTLIHLLGREAIEARMKAAGHSDPSRNIPFLTTVEAFALKGNNFERERAAFVGASDADQRRLLDVNADKM VLANVDGVSFAGGPRFIDSLEWFASPSDVARLMIDLRARQSPEAMAAMAINNGVGPAAAAEWSWLGYKGGSETGVLSMSL LGQRKGDDKYVVVTASWNNPDAAVATETMVALIKRLLALAAKD >Mature_443_residues MIRRRIARSFVAVLLTCTPLFAAAPALAHQSPEMAAAADTAFARRADQLVDLIAGRIAFADYFDAGFQKALPEAQFRAVT ANLIAQYGAPVAVDGATSSNGLSGTVRLRFEKGVATVLLDVAAGADEKVVGLRITDFTMADDSFDKVAAELAALPGHTGF LVAELDGGGIRKIAAANSERQFAIGSTFKLYILDELAAQVAAGKRRWSDVVPLTHASFSSAGTAGWPRDMPVTLQTLANW MISVSDNGATDTLIHLLGREAIEARMKAAGHSDPSRNIPFLTTVEAFALKGNNFERERAAFVGASDADQRRLLDVNADKM VLANVDGVSFAGGPRFIDSLEWFASPSDVARLMIDLRARQSPEAMAAMAINNGVGPAAAAEWSWLGYKGGSETGVLSMSL LGQRKGDDKYVVVTASWNNPDAAVATETMVALIKRLLALAAKD
Specific function: Unknown
COG id: COG2367
COG function: function code V; Beta-lactamase class A
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46931; Mature: 46931
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRRRIARSFVAVLLTCTPLFAAAPALAHQSPEMAAAADTAFARRADQLVDLIAGRIAFA CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH DYFDAGFQKALPEAQFRAVTANLIAQYGAPVAVDGATSSNGLSGTVRLRFEKGVATVLLD HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEEECCCEEEHHH VAAGADEKVVGLRITDFTMADDSFDKVAAELAALPGHTGFLVAELDGGGIRKIAAANSER HHCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCC QFAIGSTFKLYILDELAAQVAAGKRRWSDVVPLTHASFSSAGTAGWPRDMPVTLQTLANW EEEECCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH MISVSDNGATDTLIHLLGREAIEARMKAAGHSDPSRNIPFLTTVEAFALKGNNFERERAA EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHEEEECCCCCCHHHHH FVGASDADQRRLLDVNADKMVLANVDGVSFAGGPRFIDSLEWFASPSDVARLMIDLRARQ EECCCCCCCCEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCC SPEAMAAMAINNGVGPAAAAEWSWLGYKGGSETGVLSMSLLGQRKGDDKYVVVTASWNNP CCHHHHHHHHCCCCCCCHHCCCCEEECCCCCCCCEEEHHHHCCCCCCCCEEEEEEECCCC DAAVATETMVALIKRLLALAAKD CHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MIRRRIARSFVAVLLTCTPLFAAAPALAHQSPEMAAAADTAFARRADQLVDLIAGRIAFA CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH DYFDAGFQKALPEAQFRAVTANLIAQYGAPVAVDGATSSNGLSGTVRLRFEKGVATVLLD HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEEECCCEEEHHH VAAGADEKVVGLRITDFTMADDSFDKVAAELAALPGHTGFLVAELDGGGIRKIAAANSER HHCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCC QFAIGSTFKLYILDELAAQVAAGKRRWSDVVPLTHASFSSAGTAGWPRDMPVTLQTLANW EEEECCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH MISVSDNGATDTLIHLLGREAIEARMKAAGHSDPSRNIPFLTTVEAFALKGNNFERERAA EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHEEEECCCCCCHHHHH FVGASDADQRRLLDVNADKMVLANVDGVSFAGGPRFIDSLEWFASPSDVARLMIDLRARQ EECCCCCCCCEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCC SPEAMAAMAINNGVGPAAAAEWSWLGYKGGSETGVLSMSLLGQRKGDDKYVVVTASWNNP CCHHHHHHHHCCCCCCCHHCCCCEEECCCCCCCCEEEHHHHCCCCCCCCEEEEEEECCCC DAAVATETMVALIKRLLALAAKD CHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA