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The map label for this gene is rsmB [H]

Identifier: 103486517

GI number: 103486517

Start: 1062032

End: 1063222

Strand: Direct

Name: rsmB [H]

Synonym: Sala_1028

Alternate gene names: 103486517

Gene position: 1062032-1063222 (Clockwise)

Preceding gene: 103486516

Following gene: 103486518

Centisome position: 31.75

GC content: 71.28

Gene sequence:

>1191_bases
ATGACCCCCGCTGCGCGCATCCAGACCGCCATCGAAATCCTCGACGCCATCGCTGCCGCCGCGCGCGAGGGCGGGGCGCC
TGCGGACGCGATCCTTGCCGAAGCGATGCGCGCGCGCCGCTATGCGGGGTCGAAGGACCGCCGTGCGATCCGCGCGCTCG
TCTATGACGTGATCCGCGCCGTGCGCTCGGCGCCCGAGTCGGGCCGCGCGGCGATGCTCGCGCTTGCCGATGCGCAGCCC
GGCCTAGCGGCGCTGTTCGACGGTTCGGCTTATGGCCCGGCGCCGATCGCCGCCGACGAGCCGCGCGCGCAGACAGGCGT
TGCCGCCGAGGCGCTGATCGACCTCTTCGACCCGCTCGTCGGCGAGGAAGAGCATGACTCGCTGCTGGCACGCGCGCCGC
TCGACCTTCGCGTCAATCGGATCAAGGCGGGGCGCGCTGACCTCGAGACACTGTTTCCCGAAGGCGCGCCGATCCCCGGC
GCGCCCGACGGATGGCGCCTGCCGCCCGAAACCGCCGCAGCCCAGCACCCCGCCTATGCTGAAGGCGCGTTCGAGGTGCA
GGATGCCGCAAGCCAGTACGCGTCGGCCGCGCTGGCCGCCGCGCCGGGGCAGGCGATCGTCGATCTGTGCGCCGGTGGCG
GGGGCAAGACGCTCGCGATCGCTTCGCTGACCGGCAATGCGGCTGACATCCTTGCCTGCGACACCAATCGTGCGCGCCTG
CAACAATTGCCGCGGCGTGCCGAACGGGCCGGCGCAACGCGGATCGCAACCCGGCTGCTCAATCCGGGGCAGGAAGTTGC
GATGCTCGCCGACTGGCAGGGGAGGGCGGATCGCGTTTTCGTCGATGCGCCCTGTTCGGGCAGCGGCACCTGGCGGCGCA
GCCCCGAACTGCGCTGGCGGCTCACCCCTGCGCGGCTCGACCGCCATCTCGGCGATCAGGCGAAGCTGATCGACCTCGGC
GCCGATCTGGTGGCGCCGGGCGGCAAACTCCTTTATGCTGTCTGCTCGATCATCGCGCGCGAGGGGCGGGCACAGGTGGC
TGATTTTCTGAACCGGCATCCCGGCTGGACGGCCGACGCCGACTATCTTCCCGGCGGTGTCGGGCGCGCCGCGGGCGCCG
GTTTCCTGCTGACTCCGGCGCACGACGGCTGCGACGGATTTTTTCTCGCACGGCTGACATCGCCATGTTAG

Upstream 100 bases:

>100_bases
CATCGGCCTTGCGCAAGGCCGATGAGCTCCACCCGCTGCGACTAAGCCAGCAAGCTGGCAAGTCTCGCTGCCCTCCCCTG
AAGGCGAGGGCGCAGGTTCA

Downstream 100 bases:

>100_bases
CATCATCGGCATTCAACCGATGGGAGAGAGCGATGCGCATCACTTTGCTGGCCCTTGGCGCCGGTCTTGTTCTGGCCAGC
CTGCCGACCGCCTCCGATGC

Product: Fmu (Sun)

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MTPAARIQTAIEILDAIAAAAREGGAPADAILAEAMRARRYAGSKDRRAIRALVYDVIRAVRSAPESGRAAMLALADAQP
GLAALFDGSAYGPAPIAADEPRAQTGVAAEALIDLFDPLVGEEEHDSLLARAPLDLRVNRIKAGRADLETLFPEGAPIPG
APDGWRLPPETAAAQHPAYAEGAFEVQDAASQYASAALAAAPGQAIVDLCAGGGGKTLAIASLTGNAADILACDTNRARL
QQLPRRAERAGATRIATRLLNPGQEVAMLADWQGRADRVFVDAPCSGSGTWRRSPELRWRLTPARLDRHLGDQAKLIDLG
ADLVAPGGKLLYAVCSIIAREGRAQVADFLNRHPGWTADADYLPGGVGRAAGAGFLLTPAHDGCDGFFLARLTSPC

Sequences:

>Translated_396_residues
MTPAARIQTAIEILDAIAAAAREGGAPADAILAEAMRARRYAGSKDRRAIRALVYDVIRAVRSAPESGRAAMLALADAQP
GLAALFDGSAYGPAPIAADEPRAQTGVAAEALIDLFDPLVGEEEHDSLLARAPLDLRVNRIKAGRADLETLFPEGAPIPG
APDGWRLPPETAAAQHPAYAEGAFEVQDAASQYASAALAAAPGQAIVDLCAGGGGKTLAIASLTGNAADILACDTNRARL
QQLPRRAERAGATRIATRLLNPGQEVAMLADWQGRADRVFVDAPCSGSGTWRRSPELRWRLTPARLDRHLGDQAKLIDLG
ADLVAPGGKLLYAVCSIIAREGRAQVADFLNRHPGWTADADYLPGGVGRAAGAGFLLTPAHDGCDGFFLARLTSPC
>Mature_395_residues
TPAARIQTAIEILDAIAAAAREGGAPADAILAEAMRARRYAGSKDRRAIRALVYDVIRAVRSAPESGRAAMLALADAQPG
LAALFDGSAYGPAPIAADEPRAQTGVAAEALIDLFDPLVGEEEHDSLLARAPLDLRVNRIKAGRADLETLFPEGAPIPGA
PDGWRLPPETAAAQHPAYAEGAFEVQDAASQYASAALAAAPGQAIVDLCAGGGGKTLAIASLTGNAADILACDTNRARLQ
QLPRRAERAGATRIATRLLNPGQEVAMLADWQGRADRVFVDAPCSGSGTWRRSPELRWRLTPARLDRHLGDQAKLIDLGA
DLVAPGGKLLYAVCSIIAREGRAQVADFLNRHPGWTADADYLPGGVGRAAGAGFLLTPAHDGCDGFFLARLTSPC

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI32698918, Length=196, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI76150625, Length=235, Percent_Identity=28.936170212766, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI76150623, Length=235, Percent_Identity=28.936170212766, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI270288818, Length=240, Percent_Identity=29.1666666666667, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI23199998, Length=240, Percent_Identity=29.1666666666667, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI8922322, Length=240, Percent_Identity=29.1666666666667, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI270288816, Length=240, Percent_Identity=29.1666666666667, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI39995082, Length=199, Percent_Identity=27.1356783919598, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI301336155, Length=199, Percent_Identity=27.1356783919598, Blast_Score=69, Evalue=8e-12,
Organism=Escherichia coli, GI2367212, Length=276, Percent_Identity=34.7826086956522, Blast_Score=118, Evalue=8e-28,
Organism=Escherichia coli, GI87081985, Length=284, Percent_Identity=29.5774647887324, Blast_Score=93, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17536757, Length=285, Percent_Identity=28.7719298245614, Blast_Score=85, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6324268, Length=309, Percent_Identity=26.2135922330097, Blast_Score=81, Evalue=2e-16,
Organism=Drosophila melanogaster, GI22024126, Length=313, Percent_Identity=26.517571884984, Blast_Score=79, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24668781, Length=176, Percent_Identity=28.9772727272727, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI21356513, Length=176, Percent_Identity=28.9772727272727, Blast_Score=69, Evalue=8e-12,
Organism=Drosophila melanogaster, GI21355201, Length=184, Percent_Identity=27.7173913043478, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 41320; Mature: 41189

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAARIQTAIEILDAIAAAAREGGAPADAILAEAMRARRYAGSKDRRAIRALVYDVIRA
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VRSAPESGRAAMLALADAQPGLAALFDGSAYGPAPIAADEPRAQTGVAAEALIDLFDPLV
HHCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
GEEEHDSLLARAPLDLRVNRIKAGRADLETLFPEGAPIPGAPDGWRLPPETAAAQHPAYA
CCCHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
EGAFEVQDAASQYASAALAAAPGQAIVDLCAGGGGKTLAIASLTGNAADILACDTNRARL
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCHHHH
QQLPRRAERAGATRIATRLLNPGQEVAMLADWQGRADRVFVDAPCSGSGTWRRSPELRWR
HHHHHHHHHHHHHHHHHHHCCCCHHEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCEEE
LTPARLDRHLGDQAKLIDLGADLVAPGGKLLYAVCSIIAREGRAQVADFLNRHPGWTADA
ECHHHHHHHCCCCCEEEECCCHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
DYLPGGVGRAAGAGFLLTPAHDGCDGFFLARLTSPC
CCCCCCCCHHCCCCEEEECCCCCCCCEEHHHHCCCC
>Mature Secondary Structure 
TPAARIQTAIEILDAIAAAAREGGAPADAILAEAMRARRYAGSKDRRAIRALVYDVIRA
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VRSAPESGRAAMLALADAQPGLAALFDGSAYGPAPIAADEPRAQTGVAAEALIDLFDPLV
HHCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
GEEEHDSLLARAPLDLRVNRIKAGRADLETLFPEGAPIPGAPDGWRLPPETAAAQHPAYA
CCCHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
EGAFEVQDAASQYASAALAAAPGQAIVDLCAGGGGKTLAIASLTGNAADILACDTNRARL
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCHHHH
QQLPRRAERAGATRIATRLLNPGQEVAMLADWQGRADRVFVDAPCSGSGTWRRSPELRWR
HHHHHHHHHHHHHHHHHHHCCCCHHEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCEEE
LTPARLDRHLGDQAKLIDLGADLVAPGGKLLYAVCSIIAREGRAQVADFLNRHPGWTADA
ECHHHHHHHCCCCCEEEECCCHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
DYLPGGVGRAAGAGFLLTPAHDGCDGFFLARLTSPC
CCCCCCCCHHCCCCEEEECCCCCCCCEEHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]