| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486518
Identifier: 103486518
GI number: 103486518
Start: 1063255
End: 1063785
Strand: Direct
Name: 103486518
Synonym: Sala_1029
Alternate gene names: NA
Gene position: 1063255-1063785 (Clockwise)
Preceding gene: 103486517
Following gene: 103486521
Centisome position: 31.78
GC content: 65.91
Gene sequence:
>531_bases ATGCGCATCACTTTGCTGGCCCTTGGCGCCGGTCTTGTTCTGGCCAGCCTGCCGACCGCCTCCGATGCACAGCGCGCCGA CAACGACATTCTCCCGCGCTCGATCGCGCTCCAGCAGGAAGGACAAAGGGCGCAGGAGGTCGGCGATCTGAACCTTGCAA TCGACTATTATGAATCGGCGCTCGCAGCCGATCCGCGCAACCGTTCGGCGATCATCGCGCTGGCGCAGGTTGCGCGCGCG CAGGGCCTGCCGGGGAAGGCCATCGGCCTTTATCGCGAGGCGCTGTTGCTCGAACCGAATGACATTGTCGCGCTGACCGG ACAGGGCGAAGCACTGGCCGACAAGGGGGCGCTCGAACTGGCGCGCGAAAAACTCGCCGAGGCTGAGCGCGTGTGCAAGG GCGAATGCCCGCGGGTCGCGCAACTCGAAAAGACGATCGCCGCCAATGCGTCAAAGCGCGTCGTTGCCGCCGAGGCCCTG GTGCCAAAGCCGGTGGTCGCCACGGTGAAGCCGGCCAGCGGCCAGAATTGA
Upstream 100 bases:
>100_bases TCCTGCTGACTCCGGCGCACGACGGCTGCGACGGATTTTTTCTCGCACGGCTGACATCGCCATGTTAGCATCATCGGCAT TCAACCGATGGGAGAGAGCG
Downstream 100 bases:
>100_bases GCGTCGCATTCGGGAGCGGCGCGCTTGTCCGGGTTGCAACCGGAAACAGCGGCTACCACCGACTGCGTTTTTTTTGCGCG AAGGATCGCGTTGGAACAGC
Product: tetratricopeptide TPR_2
Products: NA
Alternate protein names: TPR Repeat Protein
Number of amino acids: Translated: 176; Mature: 176
Protein sequence:
>176_residues MRITLLALGAGLVLASLPTASDAQRADNDILPRSIALQQEGQRAQEVGDLNLAIDYYESALAADPRNRSAIIALAQVARA QGLPGKAIGLYREALLLEPNDIVALTGQGEALADKGALELAREKLAEAERVCKGECPRVAQLEKTIAANASKRVVAAEAL VPKPVVATVKPASGQN
Sequences:
>Translated_176_residues MRITLLALGAGLVLASLPTASDAQRADNDILPRSIALQQEGQRAQEVGDLNLAIDYYESALAADPRNRSAIIALAQVARA QGLPGKAIGLYREALLLEPNDIVALTGQGEALADKGALELAREKLAEAERVCKGECPRVAQLEKTIAANASKRVVAAEAL VPKPVVATVKPASGQN >Mature_176_residues MRITLLALGAGLVLASLPTASDAQRADNDILPRSIALQQEGQRAQEVGDLNLAIDYYESALAADPRNRSAIIALAQVARA QGLPGKAIGLYREALLLEPNDIVALTGQGEALADKGALELAREKLAEAERVCKGECPRVAQLEKTIAANASKRVVAAEAL VPKPVVATVKPASGQN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18395; Mature: 18395
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRITLLALGAGLVLASLPTASDAQRADNDILPRSIALQQEGQRAQEVGDLNLAIDYYESA CEEEEEEECHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHCCHHHHHHCCCEEEHHHHHHH LAADPRNRSAIIALAQVARAQGLPGKAIGLYREALLLEPNDIVALTGQGEALADKGALEL HHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHHHHH AREKLAEAERVCKGECPRVAQLEKTIAANASKRVVAAEALVPKPVVATVKPASGQN HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEHHHHCCCCCEEEECCCCCCC >Mature Secondary Structure MRITLLALGAGLVLASLPTASDAQRADNDILPRSIALQQEGQRAQEVGDLNLAIDYYESA CEEEEEEECHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHCCHHHHHHCCCEEEHHHHHHH LAADPRNRSAIIALAQVARAQGLPGKAIGLYREALLLEPNDIVALTGQGEALADKGALEL HHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHHHHH AREKLAEAERVCKGECPRVAQLEKTIAANASKRVVAAEALVPKPVVATVKPASGQN HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEHHHHCCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA