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The map label for this gene is 103486476

Identifier: 103486476

GI number: 103486476

Start: 1013814

End: 1014449

Strand: Direct

Name: 103486476

Synonym: Sala_0987

Alternate gene names: NA

Gene position: 1013814-1014449 (Clockwise)

Preceding gene: 103486475

Following gene: 103486481

Centisome position: 30.31

GC content: 69.03

Gene sequence:

>636_bases
ATGAAGCCGCAGGACGCGCCGCTGGTCACGGGCTATGCGCTCGCCTGCGTCATCCTGTTCGTCCTGCTCTGGATCACGGG
CTTTCAGATCGAAGCGATCGTGCGCGCGGGCTTTATTCCCGCGCGCTTCGGCCAGGAATTGATCCTGCCGCCGGGAACGC
TGGTGCCCTTTGTGCTGACGCCGCTGACGTCGGCCTTTCTGCACGGCGGGGTGCTCCACATCGCCTTCAACATGGTCGTG
CTGCTGTTCATCGGCCGCCAATTGGAAGCGCCGCTGGGCACGAAGGCGATGGCGGTGCTGCTGCTCGCGGGAGCCTATGG
CGGCGCGCTCGCCCAATATCTCGCCGATCCCGCCTCCGCCGTGCCGATGATCGGCGCGAGCGGCGCAATCTCGGCGCTCA
TCGCGGTGTTCGCGCTGATTTTCAGCCGCACACAGGCGCCCGCGATCGGGCCGATCCCCAGCCATTGGGTGCGCGCGATC
TGGCTCGCCGCAGCGTGGATCGGCGTTCAGGTCCTGCTGGGCTTCGCGGGCGGCGCGGGGTTCGGCGCAATCGCCATCTG
GGCGCATGTCGGAGGGTTCCTGGCGGGCCTGCTGCTGGCGCGGCCGCTGCTGCGCTGGCGCTTCGGGGCGCGCTGA

Upstream 100 bases:

>100_bases
ATCGGCCGTCGCGTCGACGACGAGATCGAAGTGACCGTGCCGTCGGGCGACAAATATTATCTGGTGACCAAGATCGAATT
CATCTGATGGGTTGCCGGCG

Downstream 100 bases:

>100_bases
CCTTACGTCCCGTTCGCATCGAGCGAAGTCGAGATGCCCCTCGACTCTGCTCCACGCCGATGGGTGTCTCGACTTCGCTC
GACACGAAGGATTTAGGTGT

Product: rhomboid-like protein

Products: NA

Alternate protein names: Rhomboid-Family Protein; Rhomboid-Like Protein

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MKPQDAPLVTGYALACVILFVLLWITGFQIEAIVRAGFIPARFGQELILPPGTLVPFVLTPLTSAFLHGGVLHIAFNMVV
LLFIGRQLEAPLGTKAMAVLLLAGAYGGALAQYLADPASAVPMIGASGAISALIAVFALIFSRTQAPAIGPIPSHWVRAI
WLAAAWIGVQVLLGFAGGAGFGAIAIWAHVGGFLAGLLLARPLLRWRFGAR

Sequences:

>Translated_211_residues
MKPQDAPLVTGYALACVILFVLLWITGFQIEAIVRAGFIPARFGQELILPPGTLVPFVLTPLTSAFLHGGVLHIAFNMVV
LLFIGRQLEAPLGTKAMAVLLLAGAYGGALAQYLADPASAVPMIGASGAISALIAVFALIFSRTQAPAIGPIPSHWVRAI
WLAAAWIGVQVLLGFAGGAGFGAIAIWAHVGGFLAGLLLARPLLRWRFGAR
>Mature_211_residues
MKPQDAPLVTGYALACVILFVLLWITGFQIEAIVRAGFIPARFGQELILPPGTLVPFVLTPLTSAFLHGGVLHIAFNMVV
LLFIGRQLEAPLGTKAMAVLLLAGAYGGALAQYLADPASAVPMIGASGAISALIAVFALIFSRTQAPAIGPIPSHWVRAI
WLAAAWIGVQVLLGFAGGAGFGAIAIWAHVGGFLAGLLLARPLLRWRFGAR

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22043; Mature: 22043

Theoretical pI: Translated: 10.94; Mature: 10.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPQDAPLVTGYALACVILFVLLWITGFQIEAIVRAGFIPARFGQELILPPGTLVPFVLT
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCCEECCCCHHHHHHHH
PLTSAFLHGGVLHIAFNMVVLLFIGRQLEAPLGTKAMAVLLLAGAYGGALAQYLADPASA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
VPMIGASGAISALIAVFALIFSRTQAPAIGPIPSHWVRAIWLAAAWIGVQVLLGFAGGAG
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
FGAIAIWAHVGGFLAGLLLARPLLRWRFGAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKPQDAPLVTGYALACVILFVLLWITGFQIEAIVRAGFIPARFGQELILPPGTLVPFVLT
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCCEECCCCHHHHHHHH
PLTSAFLHGGVLHIAFNMVVLLFIGRQLEAPLGTKAMAVLLLAGAYGGALAQYLADPASA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
VPMIGASGAISALIAVFALIFSRTQAPAIGPIPSHWVRAIWLAAAWIGVQVLLGFAGGAG
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
FGAIAIWAHVGGFLAGLLLARPLLRWRFGAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA