Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486446

Identifier: 103486446

GI number: 103486446

Start: 981825

End: 983090

Strand: Direct

Name: 103486446

Synonym: Sala_0956

Alternate gene names: NA

Gene position: 981825-983090 (Clockwise)

Preceding gene: 103486445

Following gene: 103486447

Centisome position: 29.35

GC content: 70.3

Gene sequence:

>1266_bases
TTGGCCGCACCCGCCGCCGCGCAAGATGTCGCGATCACCAATGCCAGGCTCGTCATCGGCGACGGCAGCGCGCCGATCGA
GGGCGGCACCGTCGTCGTGCGCGGCGGCAGGGTCGTCGCCGCCGGTGCGGGCGTCGCGGTGCCCGCGGGCGTCGAGCGCG
TCGATGCCGAAGGCCGCTATGTGACGCCGGGCATCGTCGCGGCGTTCAGCCGGGTCGGGCTGGTCGAGGTCGACGCGGTG
AGCGGATCGAACGACCGCGCGGCGCCGCGCACGCGCTTTTCGGCGGGGCTTGATATTGCGCCAGCATTGAACCCGATGGG
ATCGCCCGTCGCGGTCAATCGCGCGTCGGGCGTCACGCGCGCGATCGTCGCGCCCGGCGGCAGCAGCAATTTGTTCGCGG
GCCAGGGCGCGGTCGTCGACCTGGCCGACGATATGGACATGGTGACGCGCCCGCGCGCGCTGCAATATGTGGCGTTCGGC
GAGGATGGGGCCGCGAAGGCGGGGGGCAGCCGCGCCGCGACCTTCCTCTTGTTCCGTGAACAATTGCTTGCGGCGCGCAG
CTATGCCCGCAATCCCGCGGCGCTCGCCGAATGGGGCAATGACGCGATGCTCCAGCGCGCCGATGCCGAGGCGCTGGTGC
GCGTGATCGACGGCACGACGCCGCTGTTCGTGCGGGTCGACCGTGCCGCCGACATCGTCAATGTGCTGAAGCTGAAAGGC
GAGTTTCCGGCGATGAAGCTGGTGCTCGTCGGCGTCACCGACGGCTGGCTCGTCGCGCGCGAGATCGCCGCGGCGAAGGT
GCCGGTGCTCGTCTCGCCGCTGAGCGACCTGCCCGACAGTTTCGAGCGGCTGGCGGCGACGCAATCGAACGCCGGACGGC
TGAAGGCCGCGGGCGTCGATGTGTCAGTGGGCGTGTTCGACGACGATGATGCACACAAGATGGGCTATGCCACGCAATAT
GCGGGCAATCTGGTCGGGCTGGCGCGGATGCCTGGTGCGAGCGGGATGACGTGGGATCAGGCCTTTGCCGCGATCAGCAG
CGCGCCCGCGCGCGCGGTAGGCATGGAAGGCAGCATCGGATCGCTGCGCCCCGGCCGCGTCGGCGACGTCGTGATCTGGG
ACAACGACCCGCTCGAACTCGGCAGCCGACCGGTCGCGATCTGGATCGACGGCAGGGCGCAGTCGCTGACGACCCGGCAG
GACCGCCTGCGCGATCGCTATGCGACGCCGCAGGAAGGCGCGTTGCCGAAGGCCTATGATCGGTAG

Upstream 100 bases:

>100_bases
GGCGAAGTCGCGATGCCCATCGTTCGTGCGCGCCTTCGGCGTGTCTCGACTTCGCTCGACACGAACGGGGCTGGGGACTG
CGCTCGTTGCAGCCTTGGCG

Downstream 100 bases:

>100_bases
GTGTTGATTTCGTCATCCCGGCGAAGGCCGGGATCTCGCCCTCGCGTTCTCAGGCAGCGGCGAGATCCCCGCCTTCGCGG
GGATGACGGGCGTAAATGGT

Product: hypothetical protein

Products: NA

Alternate protein names: Amidohydrolase Family Protein; Imidazolonepropionase; Amidohydrolase Protein; Amidohodrolase; Aminohydrolase; Imidazolonepropionase And Related Amidohydrolases; Dihydroorotase; Amidohydrolase Imidazolonepropionase; Secreted Protein

Number of amino acids: Translated: 421; Mature: 420

Protein sequence:

>421_residues
MAAPAAAQDVAITNARLVIGDGSAPIEGGTVVVRGGRVVAAGAGVAVPAGVERVDAEGRYVTPGIVAAFSRVGLVEVDAV
SGSNDRAAPRTRFSAGLDIAPALNPMGSPVAVNRASGVTRAIVAPGGSSNLFAGQGAVVDLADDMDMVTRPRALQYVAFG
EDGAAKAGGSRAATFLLFREQLLAARSYARNPAALAEWGNDAMLQRADAEALVRVIDGTTPLFVRVDRAADIVNVLKLKG
EFPAMKLVLVGVTDGWLVAREIAAAKVPVLVSPLSDLPDSFERLAATQSNAGRLKAAGVDVSVGVFDDDDAHKMGYATQY
AGNLVGLARMPGASGMTWDQAFAAISSAPARAVGMEGSIGSLRPGRVGDVVIWDNDPLELGSRPVAIWIDGRAQSLTTRQ
DRLRDRYATPQEGALPKAYDR

Sequences:

>Translated_421_residues
MAAPAAAQDVAITNARLVIGDGSAPIEGGTVVVRGGRVVAAGAGVAVPAGVERVDAEGRYVTPGIVAAFSRVGLVEVDAV
SGSNDRAAPRTRFSAGLDIAPALNPMGSPVAVNRASGVTRAIVAPGGSSNLFAGQGAVVDLADDMDMVTRPRALQYVAFG
EDGAAKAGGSRAATFLLFREQLLAARSYARNPAALAEWGNDAMLQRADAEALVRVIDGTTPLFVRVDRAADIVNVLKLKG
EFPAMKLVLVGVTDGWLVAREIAAAKVPVLVSPLSDLPDSFERLAATQSNAGRLKAAGVDVSVGVFDDDDAHKMGYATQY
AGNLVGLARMPGASGMTWDQAFAAISSAPARAVGMEGSIGSLRPGRVGDVVIWDNDPLELGSRPVAIWIDGRAQSLTTRQ
DRLRDRYATPQEGALPKAYDR
>Mature_420_residues
AAPAAAQDVAITNARLVIGDGSAPIEGGTVVVRGGRVVAAGAGVAVPAGVERVDAEGRYVTPGIVAAFSRVGLVEVDAVS
GSNDRAAPRTRFSAGLDIAPALNPMGSPVAVNRASGVTRAIVAPGGSSNLFAGQGAVVDLADDMDMVTRPRALQYVAFGE
DGAAKAGGSRAATFLLFREQLLAARSYARNPAALAEWGNDAMLQRADAEALVRVIDGTTPLFVRVDRAADIVNVLKLKGE
FPAMKLVLVGVTDGWLVAREIAAAKVPVLVSPLSDLPDSFERLAATQSNAGRLKAAGVDVSVGVFDDDDAHKMGYATQYA
GNLVGLARMPGASGMTWDQAFAAISSAPARAVGMEGSIGSLRPGRVGDVVIWDNDPLELGSRPVAIWIDGRAQSLTTRQD
RLRDRYATPQEGALPKAYDR

Specific function: Unknown

COG id: COG1228

COG function: function code Q; Imidazolonepropionase and related amidohydrolases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43565; Mature: 43434

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAPAAAQDVAITNARLVIGDGSAPIEGGTVVVRGGRVVAAGAGVAVPAGVERVDAEGRY
CCCCCCCCCEEEECEEEEEECCCCCCCCCEEEEECCEEEEECCCEECCCCCCEECCCCCE
VTPGIVAAFSRVGLVEVDAVSGSNDRAAPRTRFSAGLDIAPALNPMGSPVAVNRASGVTR
ECCHHHHHHHHCCEEEEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEECCCCCEE
AIVAPGGSSNLFAGQGAVVDLADDMDMVTRPRALQYVAFGEDGAAKAGGSRAATFLLFRE
EEEECCCCCCEEECCCCEEEECCCCHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHH
QLLAARSYARNPAALAEWGNDAMLQRADAEALVRVIDGTTPLFVRVDRAADIVNVLKLKG
HHHHHHHHCCCCHHHHHCCCHHHHHHCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCC
EFPAMKLVLVGVTDGWLVAREIAAAKVPVLVSPLSDLPDSFERLAATQSNAGRLKAAGVD
CCCEEEEEEEECCCCHHHHHHHHHHCCCEEECCHHHCHHHHHHHHHCCCCCCEEEECCCE
VSVGVFDDDDAHKMGYATQYAGNLVGLARMPGASGMTWDQAFAAISSAPARAVGMEGSIG
EEEEEECCCCCHHHCCHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCEECCCCCCC
SLRPGRVGDVVIWDNDPLELGSRPVAIWIDGRAQSLTTRQDRLRDRYATPQEGALPKAYD
CCCCCCCCEEEEECCCCHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
R
C
>Mature Secondary Structure 
AAPAAAQDVAITNARLVIGDGSAPIEGGTVVVRGGRVVAAGAGVAVPAGVERVDAEGRY
CCCCCCCCEEEECEEEEEECCCCCCCCCEEEEECCEEEEECCCEECCCCCCEECCCCCE
VTPGIVAAFSRVGLVEVDAVSGSNDRAAPRTRFSAGLDIAPALNPMGSPVAVNRASGVTR
ECCHHHHHHHHCCEEEEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEECCCCCEE
AIVAPGGSSNLFAGQGAVVDLADDMDMVTRPRALQYVAFGEDGAAKAGGSRAATFLLFRE
EEEECCCCCCEEECCCCEEEECCCCHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHH
QLLAARSYARNPAALAEWGNDAMLQRADAEALVRVIDGTTPLFVRVDRAADIVNVLKLKG
HHHHHHHHCCCCHHHHHCCCHHHHHHCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCC
EFPAMKLVLVGVTDGWLVAREIAAAKVPVLVSPLSDLPDSFERLAATQSNAGRLKAAGVD
CCCEEEEEEEECCCCHHHHHHHHHHCCCEEECCHHHCHHHHHHHHHCCCCCCEEEECCCE
VSVGVFDDDDAHKMGYATQYAGNLVGLARMPGASGMTWDQAFAAISSAPARAVGMEGSIG
EEEEEECCCCCHHHCCHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCEECCCCCCC
SLRPGRVGDVVIWDNDPLELGSRPVAIWIDGRAQSLTTRQDRLRDRYATPQEGALPKAYD
CCCCCCCCEEEEECCCCHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA