| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486445
Identifier: 103486445
GI number: 103486445
Start: 980275
End: 981687
Strand: Direct
Name: 103486445
Synonym: Sala_0955
Alternate gene names: NA
Gene position: 980275-981687 (Clockwise)
Preceding gene: 103486444
Following gene: 103486446
Centisome position: 29.3
GC content: 64.47
Gene sequence:
>1413_bases ATGAAAACGGGTGTGAAGGGCAGCCTGCTGGCTGCGGTGTCGCTGGCGCTTGTCGGCTGTGCGGCGACGGGTGGCGGTGC GGCGTCGGCGGGCGACAAGCCAGCCGCGAGCGCCGACAAACCAGCGAAGTTCGACAAAAACCCCTATCCGTCGACCTATA CGCCCTATCCGGGGCGGCCGACGGCGGTGCGCGGGGTGACGATCTTTGACGGCGAAGGCGGGCGGATCGACAATGGCGTC GTGCTGTTCGCCGGCGGCAAGATCGAGGCGGTCGGCGGCGCCGACACGGCGATCCCGGCGGGCTATGATGTGATCGACGG CACCGGCAAGGTGCTGACCCCCGGCATCATCGACATCCACAGCCACCTTGGCGACTATCCCTCGCCCAGCGTCGATGCGC ACGACGACGGCAACGAGGCGACGTCGCCGACCACACCCGAAGTCTGGTCCGAACATAGCGTGTGGCCACAGGATCCGGGG TTCAGCCGCGCGCTGGCGAATGGCGGCGTCACGAGCCTGCAAATCCTGCCCGGCAGCGCCAACCTGATGGGCGGGCGGTC GATCACGCTCAAAAATGTGCCGTCGCGCACGGTGCAGGGGATGAAGTTCCCCGGCGCGCCCTATGGCCTGAAAATGGCGT GCGGCGAGAATCCGAAGCGCGTCTATGGCGGCAAGGGGCGGATGCCCTCTACCCGCATGGGCAATTTTGCCGTCAATCGC CAAACCTGGGCGAAGGCGGTCGCCTATAAGAAAAAGCTGGACGACGGCAAGGCCGTCGACCGCGACCTCGCGATGGAAAC GCTCGCGGGGGTGCTCGCGGGCGAAATCCTGATCCACAATCACTGCTATCGCGCCGACGAAATGGCGCTGGTGATCGATA TGTCGAAGGAGTTCGGTTACAAGGTATCGACCTTTCACCACGCGGTCGAAAGCTACAAGATTGCCGACATGCTCGCGAAG GAAGGCATTTGTTCGGCGATGTGGGCCGACTGGTGGGGCTTCAAGATGGAAGCCTATGACAGCGTGAACGAAAATGTCCC GCTGGTTCACAAGGCCGGCGCCTGCGCGATCGTCCATTCGGACGACGCGAACCAGATCCAGCGGCTCAATCAGGAAGCGG CGAAGGCGTTGAAAGCCGGGCGCCGCATGGGCATCGACGTCAGCGATGCGGTGGCGTGGAGCTGGCTTTCCTATAACCCG GCGAAGGCGCTGGGCATCGGCGAGCAGACGGGCAGCCTGAAGCCGGGCAAGATGGCCGACGTCGTGCTGTGGAACGGCGA TCCGTTCAGCGCCTATACGCGGCCCGAGAAGGTCTGGATCGACGGTGCGCTGATGTTCGATGCGATGGACCCGCGGCGGC GACCGGTCAGCGATTTCGAGCTGGGGCAGCCGGGTGAAGGAGATGTGAAATGA
Upstream 100 bases:
>100_bases CCTCGATACGCTGCGCGATGCCGATGAGCTGGCGGGCAGCAAGGAGCTGGCCGAGCCGCAGGCGGCGGGCGTTCATCCCG AACCCAAGGGGGCGTAATTC
Downstream 100 bases:
>100_bases GCAAGCGCTTCACCGCCTTTCACACCCGTTTGCATCAGGCGAAGTCGCGATGCCCATCGTTCGTGCGCGCCTTCGGCGTG TCTCGACTTCGCTCGACACG
Product: amidohydrolase
Products: NA
Alternate protein names: Amidohydrolase Family Protein; Imidazolonepropionase; Amidohydrolase Imidazolonepropionase; Imidazolonepropionase And Related Amidohydrolases; Metallo-Dependent Hydrolase; Metal-Dependent Hydrolase Superfamily Protein; Amidohydrolase-Like Domain-Containing Protein; Dihydroorotase; Amidohodrolase; Aminohydrolase; Secreted; N-Acetylglucosamine-6-Phosphate Deacetylase; Imidazolone-5-Propionate Hydrolase
Number of amino acids: Translated: 470; Mature: 470
Protein sequence:
>470_residues MKTGVKGSLLAAVSLALVGCAATGGGAASAGDKPAASADKPAKFDKNPYPSTYTPYPGRPTAVRGVTIFDGEGGRIDNGV VLFAGGKIEAVGGADTAIPAGYDVIDGTGKVLTPGIIDIHSHLGDYPSPSVDAHDDGNEATSPTTPEVWSEHSVWPQDPG FSRALANGGVTSLQILPGSANLMGGRSITLKNVPSRTVQGMKFPGAPYGLKMACGENPKRVYGGKGRMPSTRMGNFAVNR QTWAKAVAYKKKLDDGKAVDRDLAMETLAGVLAGEILIHNHCYRADEMALVIDMSKEFGYKVSTFHHAVESYKIADMLAK EGICSAMWADWWGFKMEAYDSVNENVPLVHKAGACAIVHSDDANQIQRLNQEAAKALKAGRRMGIDVSDAVAWSWLSYNP AKALGIGEQTGSLKPGKMADVVLWNGDPFSAYTRPEKVWIDGALMFDAMDPRRRPVSDFELGQPGEGDVK
Sequences:
>Translated_470_residues MKTGVKGSLLAAVSLALVGCAATGGGAASAGDKPAASADKPAKFDKNPYPSTYTPYPGRPTAVRGVTIFDGEGGRIDNGV VLFAGGKIEAVGGADTAIPAGYDVIDGTGKVLTPGIIDIHSHLGDYPSPSVDAHDDGNEATSPTTPEVWSEHSVWPQDPG FSRALANGGVTSLQILPGSANLMGGRSITLKNVPSRTVQGMKFPGAPYGLKMACGENPKRVYGGKGRMPSTRMGNFAVNR QTWAKAVAYKKKLDDGKAVDRDLAMETLAGVLAGEILIHNHCYRADEMALVIDMSKEFGYKVSTFHHAVESYKIADMLAK EGICSAMWADWWGFKMEAYDSVNENVPLVHKAGACAIVHSDDANQIQRLNQEAAKALKAGRRMGIDVSDAVAWSWLSYNP AKALGIGEQTGSLKPGKMADVVLWNGDPFSAYTRPEKVWIDGALMFDAMDPRRRPVSDFELGQPGEGDVK >Mature_470_residues MKTGVKGSLLAAVSLALVGCAATGGGAASAGDKPAASADKPAKFDKNPYPSTYTPYPGRPTAVRGVTIFDGEGGRIDNGV VLFAGGKIEAVGGADTAIPAGYDVIDGTGKVLTPGIIDIHSHLGDYPSPSVDAHDDGNEATSPTTPEVWSEHSVWPQDPG FSRALANGGVTSLQILPGSANLMGGRSITLKNVPSRTVQGMKFPGAPYGLKMACGENPKRVYGGKGRMPSTRMGNFAVNR QTWAKAVAYKKKLDDGKAVDRDLAMETLAGVLAGEILIHNHCYRADEMALVIDMSKEFGYKVSTFHHAVESYKIADMLAK EGICSAMWADWWGFKMEAYDSVNENVPLVHKAGACAIVHSDDANQIQRLNQEAAKALKAGRRMGIDVSDAVAWSWLSYNP AKALGIGEQTGSLKPGKMADVVLWNGDPFSAYTRPEKVWIDGALMFDAMDPRRRPVSDFELGQPGEGDVK
Specific function: Unknown
COG id: COG1228
COG function: function code Q; Imidazolonepropionase and related amidohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49872; Mature: 49872
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTGVKGSLLAAVSLALVGCAATGGGAASAGDKPAASADKPAKFDKNPYPSTYTPYPGRP CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TAVRGVTIFDGEGGRIDNGVVLFAGGKIEAVGGADTAIPAGYDVIDGTGKVLTPGIIDIH CEEEEEEEECCCCCEECCCEEEEECCEEEECCCCCCCCCCCCEEECCCCCEECCCCEEHH SHLGDYPSPSVDAHDDGNEATSPTTPEVWSEHSVWPQDPGFSRALANGGVTSLQILPGSA HHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCCEEEEEECCCC NLMGGRSITLKNVPSRTVQGMKFPGAPYGLKMACGENPKRVYGGKGRMPSTRMGNFAVNR CCCCCCEEEECCCCCHHHCCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCEEECH QTWAKAVAYKKKLDDGKAVDRDLAMETLAGVLAGEILIHNHCYRADEMALVIDMSKEFGY HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEEHHHHCC KVSTFHHAVESYKIADMLAKEGICSAMWADWWGFKMEAYDSVNENVPLVHKAGACAIVHS CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEHHHCCCCCCCEEEECCEEEEEEC DDANQIQRLNQEAAKALKAGRRMGIDVSDAVAWSWLSYNPAKALGIGEQTGSLKPGKMAD CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCHHHEECCCCCCCCCCCCEEE VVLWNGDPFSAYTRPEKVWIDGALMFDAMDPRRRPVSDFELGQPGEGDVK EEEECCCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKTGVKGSLLAAVSLALVGCAATGGGAASAGDKPAASADKPAKFDKNPYPSTYTPYPGRP CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TAVRGVTIFDGEGGRIDNGVVLFAGGKIEAVGGADTAIPAGYDVIDGTGKVLTPGIIDIH CEEEEEEEECCCCCEECCCEEEEECCEEEECCCCCCCCCCCCEEECCCCCEECCCCEEHH SHLGDYPSPSVDAHDDGNEATSPTTPEVWSEHSVWPQDPGFSRALANGGVTSLQILPGSA HHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCCEEEEEECCCC NLMGGRSITLKNVPSRTVQGMKFPGAPYGLKMACGENPKRVYGGKGRMPSTRMGNFAVNR CCCCCCEEEECCCCCHHHCCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCEEECH QTWAKAVAYKKKLDDGKAVDRDLAMETLAGVLAGEILIHNHCYRADEMALVIDMSKEFGY HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEEHHHHCC KVSTFHHAVESYKIADMLAKEGICSAMWADWWGFKMEAYDSVNENVPLVHKAGACAIVHS CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEHHHCCCCCCCEEEECCEEEEEEC DDANQIQRLNQEAAKALKAGRRMGIDVSDAVAWSWLSYNPAKALGIGEQTGSLKPGKMAD CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCHHHEECCCCCCCCCCCCEEE VVLWNGDPFSAYTRPEKVWIDGALMFDAMDPRRRPVSDFELGQPGEGDVK EEEECCCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA