Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486445

Identifier: 103486445

GI number: 103486445

Start: 980275

End: 981687

Strand: Direct

Name: 103486445

Synonym: Sala_0955

Alternate gene names: NA

Gene position: 980275-981687 (Clockwise)

Preceding gene: 103486444

Following gene: 103486446

Centisome position: 29.3

GC content: 64.47

Gene sequence:

>1413_bases
ATGAAAACGGGTGTGAAGGGCAGCCTGCTGGCTGCGGTGTCGCTGGCGCTTGTCGGCTGTGCGGCGACGGGTGGCGGTGC
GGCGTCGGCGGGCGACAAGCCAGCCGCGAGCGCCGACAAACCAGCGAAGTTCGACAAAAACCCCTATCCGTCGACCTATA
CGCCCTATCCGGGGCGGCCGACGGCGGTGCGCGGGGTGACGATCTTTGACGGCGAAGGCGGGCGGATCGACAATGGCGTC
GTGCTGTTCGCCGGCGGCAAGATCGAGGCGGTCGGCGGCGCCGACACGGCGATCCCGGCGGGCTATGATGTGATCGACGG
CACCGGCAAGGTGCTGACCCCCGGCATCATCGACATCCACAGCCACCTTGGCGACTATCCCTCGCCCAGCGTCGATGCGC
ACGACGACGGCAACGAGGCGACGTCGCCGACCACACCCGAAGTCTGGTCCGAACATAGCGTGTGGCCACAGGATCCGGGG
TTCAGCCGCGCGCTGGCGAATGGCGGCGTCACGAGCCTGCAAATCCTGCCCGGCAGCGCCAACCTGATGGGCGGGCGGTC
GATCACGCTCAAAAATGTGCCGTCGCGCACGGTGCAGGGGATGAAGTTCCCCGGCGCGCCCTATGGCCTGAAAATGGCGT
GCGGCGAGAATCCGAAGCGCGTCTATGGCGGCAAGGGGCGGATGCCCTCTACCCGCATGGGCAATTTTGCCGTCAATCGC
CAAACCTGGGCGAAGGCGGTCGCCTATAAGAAAAAGCTGGACGACGGCAAGGCCGTCGACCGCGACCTCGCGATGGAAAC
GCTCGCGGGGGTGCTCGCGGGCGAAATCCTGATCCACAATCACTGCTATCGCGCCGACGAAATGGCGCTGGTGATCGATA
TGTCGAAGGAGTTCGGTTACAAGGTATCGACCTTTCACCACGCGGTCGAAAGCTACAAGATTGCCGACATGCTCGCGAAG
GAAGGCATTTGTTCGGCGATGTGGGCCGACTGGTGGGGCTTCAAGATGGAAGCCTATGACAGCGTGAACGAAAATGTCCC
GCTGGTTCACAAGGCCGGCGCCTGCGCGATCGTCCATTCGGACGACGCGAACCAGATCCAGCGGCTCAATCAGGAAGCGG
CGAAGGCGTTGAAAGCCGGGCGCCGCATGGGCATCGACGTCAGCGATGCGGTGGCGTGGAGCTGGCTTTCCTATAACCCG
GCGAAGGCGCTGGGCATCGGCGAGCAGACGGGCAGCCTGAAGCCGGGCAAGATGGCCGACGTCGTGCTGTGGAACGGCGA
TCCGTTCAGCGCCTATACGCGGCCCGAGAAGGTCTGGATCGACGGTGCGCTGATGTTCGATGCGATGGACCCGCGGCGGC
GACCGGTCAGCGATTTCGAGCTGGGGCAGCCGGGTGAAGGAGATGTGAAATGA

Upstream 100 bases:

>100_bases
CCTCGATACGCTGCGCGATGCCGATGAGCTGGCGGGCAGCAAGGAGCTGGCCGAGCCGCAGGCGGCGGGCGTTCATCCCG
AACCCAAGGGGGCGTAATTC

Downstream 100 bases:

>100_bases
GCAAGCGCTTCACCGCCTTTCACACCCGTTTGCATCAGGCGAAGTCGCGATGCCCATCGTTCGTGCGCGCCTTCGGCGTG
TCTCGACTTCGCTCGACACG

Product: amidohydrolase

Products: NA

Alternate protein names: Amidohydrolase Family Protein; Imidazolonepropionase; Amidohydrolase Imidazolonepropionase; Imidazolonepropionase And Related Amidohydrolases; Metallo-Dependent Hydrolase; Metal-Dependent Hydrolase Superfamily Protein; Amidohydrolase-Like Domain-Containing Protein; Dihydroorotase; Amidohodrolase; Aminohydrolase; Secreted; N-Acetylglucosamine-6-Phosphate Deacetylase; Imidazolone-5-Propionate Hydrolase

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MKTGVKGSLLAAVSLALVGCAATGGGAASAGDKPAASADKPAKFDKNPYPSTYTPYPGRPTAVRGVTIFDGEGGRIDNGV
VLFAGGKIEAVGGADTAIPAGYDVIDGTGKVLTPGIIDIHSHLGDYPSPSVDAHDDGNEATSPTTPEVWSEHSVWPQDPG
FSRALANGGVTSLQILPGSANLMGGRSITLKNVPSRTVQGMKFPGAPYGLKMACGENPKRVYGGKGRMPSTRMGNFAVNR
QTWAKAVAYKKKLDDGKAVDRDLAMETLAGVLAGEILIHNHCYRADEMALVIDMSKEFGYKVSTFHHAVESYKIADMLAK
EGICSAMWADWWGFKMEAYDSVNENVPLVHKAGACAIVHSDDANQIQRLNQEAAKALKAGRRMGIDVSDAVAWSWLSYNP
AKALGIGEQTGSLKPGKMADVVLWNGDPFSAYTRPEKVWIDGALMFDAMDPRRRPVSDFELGQPGEGDVK

Sequences:

>Translated_470_residues
MKTGVKGSLLAAVSLALVGCAATGGGAASAGDKPAASADKPAKFDKNPYPSTYTPYPGRPTAVRGVTIFDGEGGRIDNGV
VLFAGGKIEAVGGADTAIPAGYDVIDGTGKVLTPGIIDIHSHLGDYPSPSVDAHDDGNEATSPTTPEVWSEHSVWPQDPG
FSRALANGGVTSLQILPGSANLMGGRSITLKNVPSRTVQGMKFPGAPYGLKMACGENPKRVYGGKGRMPSTRMGNFAVNR
QTWAKAVAYKKKLDDGKAVDRDLAMETLAGVLAGEILIHNHCYRADEMALVIDMSKEFGYKVSTFHHAVESYKIADMLAK
EGICSAMWADWWGFKMEAYDSVNENVPLVHKAGACAIVHSDDANQIQRLNQEAAKALKAGRRMGIDVSDAVAWSWLSYNP
AKALGIGEQTGSLKPGKMADVVLWNGDPFSAYTRPEKVWIDGALMFDAMDPRRRPVSDFELGQPGEGDVK
>Mature_470_residues
MKTGVKGSLLAAVSLALVGCAATGGGAASAGDKPAASADKPAKFDKNPYPSTYTPYPGRPTAVRGVTIFDGEGGRIDNGV
VLFAGGKIEAVGGADTAIPAGYDVIDGTGKVLTPGIIDIHSHLGDYPSPSVDAHDDGNEATSPTTPEVWSEHSVWPQDPG
FSRALANGGVTSLQILPGSANLMGGRSITLKNVPSRTVQGMKFPGAPYGLKMACGENPKRVYGGKGRMPSTRMGNFAVNR
QTWAKAVAYKKKLDDGKAVDRDLAMETLAGVLAGEILIHNHCYRADEMALVIDMSKEFGYKVSTFHHAVESYKIADMLAK
EGICSAMWADWWGFKMEAYDSVNENVPLVHKAGACAIVHSDDANQIQRLNQEAAKALKAGRRMGIDVSDAVAWSWLSYNP
AKALGIGEQTGSLKPGKMADVVLWNGDPFSAYTRPEKVWIDGALMFDAMDPRRRPVSDFELGQPGEGDVK

Specific function: Unknown

COG id: COG1228

COG function: function code Q; Imidazolonepropionase and related amidohydrolases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49872; Mature: 49872

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTGVKGSLLAAVSLALVGCAATGGGAASAGDKPAASADKPAKFDKNPYPSTYTPYPGRP
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TAVRGVTIFDGEGGRIDNGVVLFAGGKIEAVGGADTAIPAGYDVIDGTGKVLTPGIIDIH
CEEEEEEEECCCCCEECCCEEEEECCEEEECCCCCCCCCCCCEEECCCCCEECCCCEEHH
SHLGDYPSPSVDAHDDGNEATSPTTPEVWSEHSVWPQDPGFSRALANGGVTSLQILPGSA
HHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCCEEEEEECCCC
NLMGGRSITLKNVPSRTVQGMKFPGAPYGLKMACGENPKRVYGGKGRMPSTRMGNFAVNR
CCCCCCEEEECCCCCHHHCCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCEEECH
QTWAKAVAYKKKLDDGKAVDRDLAMETLAGVLAGEILIHNHCYRADEMALVIDMSKEFGY
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEEHHHHCC
KVSTFHHAVESYKIADMLAKEGICSAMWADWWGFKMEAYDSVNENVPLVHKAGACAIVHS
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEHHHCCCCCCCEEEECCEEEEEEC
DDANQIQRLNQEAAKALKAGRRMGIDVSDAVAWSWLSYNPAKALGIGEQTGSLKPGKMAD
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCHHHEECCCCCCCCCCCCEEE
VVLWNGDPFSAYTRPEKVWIDGALMFDAMDPRRRPVSDFELGQPGEGDVK
EEEECCCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKTGVKGSLLAAVSLALVGCAATGGGAASAGDKPAASADKPAKFDKNPYPSTYTPYPGRP
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TAVRGVTIFDGEGGRIDNGVVLFAGGKIEAVGGADTAIPAGYDVIDGTGKVLTPGIIDIH
CEEEEEEEECCCCCEECCCEEEEECCEEEECCCCCCCCCCCCEEECCCCCEECCCCEEHH
SHLGDYPSPSVDAHDDGNEATSPTTPEVWSEHSVWPQDPGFSRALANGGVTSLQILPGSA
HHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCCEEEEEECCCC
NLMGGRSITLKNVPSRTVQGMKFPGAPYGLKMACGENPKRVYGGKGRMPSTRMGNFAVNR
CCCCCCEEEECCCCCHHHCCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCEEECH
QTWAKAVAYKKKLDDGKAVDRDLAMETLAGVLAGEILIHNHCYRADEMALVIDMSKEFGY
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEEHHHHCC
KVSTFHHAVESYKIADMLAKEGICSAMWADWWGFKMEAYDSVNENVPLVHKAGACAIVHS
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEHHHCCCCCCCEEEECCEEEEEEC
DDANQIQRLNQEAAKALKAGRRMGIDVSDAVAWSWLSYNPAKALGIGEQTGSLKPGKMAD
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCHHHEECCCCCCCCCCCCEEE
VVLWNGDPFSAYTRPEKVWIDGALMFDAMDPRRRPVSDFELGQPGEGDVK
EEEECCCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA