Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486447

Identifier: 103486447

GI number: 103486447

Start: 983333

End: 984034

Strand: Direct

Name: 103486447

Synonym: Sala_0957

Alternate gene names: NA

Gene position: 983333-984034 (Clockwise)

Preceding gene: 103486446

Following gene: 103486450

Centisome position: 29.4

GC content: 68.66

Gene sequence:

>702_bases
ATGCAACCGATGTCACTGTTGATTACCACCTGCGTCCTGTTCGTCGGCACCCATTTGCTGATGTCGCATCCGTTGCGCGC
GGGGCTGGCGAGCCGACTGGGTGAGCGGGGATTCCAGATCGTCTATTCGATCGTCGCGATCGCGACCTTCATCCTGGTGG
TGCAGGCGTGGCGCGGGATGCCGCCCGAACCGCCGCTTTGGCCGGTCGGGGACGGGCTTTGGGCGCTTGCCTCGCTGATC
GTGCTGTTCGCGAGCATATTGTTCGTGGGGTCGCTGGTCGGCAATCCCGCGCTGGCGGCGCCGGGCGCCGAAAAGGCTGC
ACAGGCCGCGCCGCGCGGGGTGTTCGCAATCACGCGCCACCCGATGATGTGGGGCTTTGCGCTATGGGCGCTGGCGCATG
TCATGGTGATGCCGACGCCGGGGCAGATTGTGCTGTCGGCGACGATCGCCTTCCTCGCGCTCGCCGGATCGGCGGGGCAG
GATGTCAAGAAGGCGCGACTGATGGGCGACGCCTGGCGCGGCTGGGCGGCGCGGACGAGCTTCGTTCCCTTTGCGCGGCA
GGTCGGCGGCGCGGCGCCATGGGCCGACGCAATGCCGCGCGCGCACGCGCTGCTCGGCGGGATCATCCTCTGGCTCGCGG
CGAGCTGGGCGCATGGCGCGCTGGGCTATATGGTTGCAGGGGTCTGGCGCTGGGTGGGATAA

Upstream 100 bases:

>100_bases
TCTTTGCTGTCCAAGATGTTGTCACTGCAAACATCGCGACTCGCCTGAGGGTCATCGCGCTGGGAAGCGAACGGATTGTC
GATCAATAAGGGTGTCCGCC

Downstream 100 bases:

>100_bases
CGGCCCTGCCGCCGAAGTCTTACAGCCGCACCATCCGCATCCCCTGTTCGCCATAGCGCGGGCCGCTGGTTCCGCCCTTC
GGCGCTGCGGAGTCGATCGC

Product: NnrU

Products: NA

Alternate protein names: NnrUfamily Protein; MFS Superfamily Permease; NnrU Protein

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MQPMSLLITTCVLFVGTHLLMSHPLRAGLASRLGERGFQIVYSIVAIATFILVVQAWRGMPPEPPLWPVGDGLWALASLI
VLFASILFVGSLVGNPALAAPGAEKAAQAAPRGVFAITRHPMMWGFALWALAHVMVMPTPGQIVLSATIAFLALAGSAGQ
DVKKARLMGDAWRGWAARTSFVPFARQVGGAAPWADAMPRAHALLGGIILWLAASWAHGALGYMVAGVWRWVG

Sequences:

>Translated_233_residues
MQPMSLLITTCVLFVGTHLLMSHPLRAGLASRLGERGFQIVYSIVAIATFILVVQAWRGMPPEPPLWPVGDGLWALASLI
VLFASILFVGSLVGNPALAAPGAEKAAQAAPRGVFAITRHPMMWGFALWALAHVMVMPTPGQIVLSATIAFLALAGSAGQ
DVKKARLMGDAWRGWAARTSFVPFARQVGGAAPWADAMPRAHALLGGIILWLAASWAHGALGYMVAGVWRWVG
>Mature_233_residues
MQPMSLLITTCVLFVGTHLLMSHPLRAGLASRLGERGFQIVYSIVAIATFILVVQAWRGMPPEPPLWPVGDGLWALASLI
VLFASILFVGSLVGNPALAAPGAEKAAQAAPRGVFAITRHPMMWGFALWALAHVMVMPTPGQIVLSATIAFLALAGSAGQ
DVKKARLMGDAWRGWAARTSFVPFARQVGGAAPWADAMPRAHALLGGIILWLAASWAHGALGYMVAGVWRWVG

Specific function: Unknown

COG id: COG4094

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24708; Mature: 24708

Theoretical pI: Translated: 11.64; Mature: 11.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPMSLLITTCVLFVGTHLLMSHPLRAGLASRLGERGFQIVYSIVAIATFILVVQAWRGM
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PPEPPLWPVGDGLWALASLIVLFASILFVGSLVGNPALAAPGAEKAAQAAPRGVFAITRH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEHHHCC
PMMWGFALWALAHVMVMPTPGQIVLSATIAFLALAGSAGQDVKKARLMGDAWRGWAARTS
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FVPFARQVGGAAPWADAMPRAHALLGGIILWLAASWAHGALGYMVAGVWRWVG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQPMSLLITTCVLFVGTHLLMSHPLRAGLASRLGERGFQIVYSIVAIATFILVVQAWRGM
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PPEPPLWPVGDGLWALASLIVLFASILFVGSLVGNPALAAPGAEKAAQAAPRGVFAITRH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEHHHCC
PMMWGFALWALAHVMVMPTPGQIVLSATIAFLALAGSAGQDVKKARLMGDAWRGWAARTS
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FVPFARQVGGAAPWADAMPRAHALLGGIILWLAASWAHGALGYMVAGVWRWVG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA