Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is yhaA [H]

Identifier: 103486430

GI number: 103486430

Start: 958282

End: 959598

Strand: Direct

Name: yhaA [H]

Synonym: Sala_0940

Alternate gene names: 103486430

Gene position: 958282-959598 (Clockwise)

Preceding gene: 103486429

Following gene: 103486432

Centisome position: 28.65

GC content: 65.98

Gene sequence:

>1317_bases
ATGATGCGCGCTTTCTGGATGGGCGCGGCGGCGCTGGCGCTGGCGGTGCCGGCATCGGCACAGACGCTGCGCGGCGAGGT
GCAGGCGCAGATGCCGTCGCTGATGGCGATTTATGACGATCTGCACGCCAATCCCGAACTCAGCTTCATGGAGGTGCGCT
CCGCGGGGATATTGGCGGCCGAGGCGCGCAAGCTGGGGTTCGAGGTCACCGAAAAGGTTGGCGGCACCGGCGTCGTTGCG
GTGATGAAGAACGGGCCCGGTCCGATCGTGATGGTGCGTGCCGACATGGACGCGCTGCCAGTTACCGAACAGACGGGGCT
GCCTGGGGCGTCGAAGGTGCGCGTCACCACCGCCGAGGGCGTCGAAACGGGCGTGATGCACGCCTGCGGTCACGACACGC
ACATGGCCGCCTGGGTCGGCGTGGCGCGGTTGATGGCGGCGAACAAGGATAAATGGTCGGGCACGCTGGTGATGATCGGC
CAGCCCGCCGAGGAACGTGGTGCCGGCGCCCGGATGATGCTTGAGGACGGGCTGTATACGCGCTTCCCGAAGCCCGAATA
TGTGCTGGCGTTCCACGATGCGGCACAGTTTCCCGCGGGCATGATCGGCTATGCGCCGGGCTATGCGCTCGCCAATGTCG
ACAGCGTCGACATCCTTGTGAAGGGCGTCGGCGGCCATGGCGCCTATCCGCAGACGACAAAGGATCCGATCGTGCTGGCG
AGCCGCATTGTCGGCGCGCTGCAAACGCTGGTGTCGCGCGAGATCAGCCCGCTCGACAGCGCGGTGGTGACGGTCGGCAG
CTTTCACGCTGGCGCCAAACACAACATCATTTCGGACGAGGCACGGCTCCAGCTGACGGTGCGCAGCTATACCGACGCGG
TGCGCGATCATCTGCTGGACGGCATCGCCCGCATCGCCAAGGGTGAGGCGATCGCGGCGGGAATGCCCGAGGACCGGATG
CCCGTGGTGACGGTGCAGAAGGACGAATATACGCCGGCCACCTTCAACACGCCCGAGTTCACCGAAGACATGGCGACCTT
TCTGAAGACCAGCTTCGGCGAAACGCGCGTCGTCAAGGTTCCGCCCGTGATGGGGGGTGAGGATTTCGGCCGCTTCGCGC
GCGCGGACAAGGATATAAAGAGCCTGATCATCTGGGTCGGCGGCGTCCCGCAGGCCGAATTTGATGCGGCGAAGAAGGAA
GGGCGGACGCTGCCCAGCCTCCACTCGCCCTTCTGGGCGCCCGACGCGCCAGCGGTGATTTCGACCGCGACCGAGGCGCT
GACCGCGATGGCGATGAAGCTGATGGGGCAGCGATAG

Upstream 100 bases:

>100_bases
TCGGCGACAATCGCTGGCGGCTGGTGCTGCCCGCGCCGGCTTATGAATCGCTGCTCGACGTGATCGAGCTGGTTCCGGCA
AATTGATGGAGGAGAGAGGG

Downstream 100 bases:

>100_bases
ACTGGGGGCTGGTTTCGTCCGGAAGCTGCCGCTCCGCCCCGGCACGGAGGAGCAATCGAAGCGCGGTGGAGGGGTCCTGA
CCCTAGCAGTCAGTCTCCCT

Product: peptidase M20D, amidohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MMRAFWMGAAALALAVPASAQTLRGEVQAQMPSLMAIYDDLHANPELSFMEVRSAGILAAEARKLGFEVTEKVGGTGVVA
VMKNGPGPIVMVRADMDALPVTEQTGLPGASKVRVTTAEGVETGVMHACGHDTHMAAWVGVARLMAANKDKWSGTLVMIG
QPAEERGAGARMMLEDGLYTRFPKPEYVLAFHDAAQFPAGMIGYAPGYALANVDSVDILVKGVGGHGAYPQTTKDPIVLA
SRIVGALQTLVSREISPLDSAVVTVGSFHAGAKHNIISDEARLQLTVRSYTDAVRDHLLDGIARIAKGEAIAAGMPEDRM
PVVTVQKDEYTPATFNTPEFTEDMATFLKTSFGETRVVKVPPVMGGEDFGRFARADKDIKSLIIWVGGVPQAEFDAAKKE
GRTLPSLHSPFWAPDAPAVISTATEALTAMAMKLMGQR

Sequences:

>Translated_438_residues
MMRAFWMGAAALALAVPASAQTLRGEVQAQMPSLMAIYDDLHANPELSFMEVRSAGILAAEARKLGFEVTEKVGGTGVVA
VMKNGPGPIVMVRADMDALPVTEQTGLPGASKVRVTTAEGVETGVMHACGHDTHMAAWVGVARLMAANKDKWSGTLVMIG
QPAEERGAGARMMLEDGLYTRFPKPEYVLAFHDAAQFPAGMIGYAPGYALANVDSVDILVKGVGGHGAYPQTTKDPIVLA
SRIVGALQTLVSREISPLDSAVVTVGSFHAGAKHNIISDEARLQLTVRSYTDAVRDHLLDGIARIAKGEAIAAGMPEDRM
PVVTVQKDEYTPATFNTPEFTEDMATFLKTSFGETRVVKVPPVMGGEDFGRFARADKDIKSLIIWVGGVPQAEFDAAKKE
GRTLPSLHSPFWAPDAPAVISTATEALTAMAMKLMGQR
>Mature_438_residues
MMRAFWMGAAALALAVPASAQTLRGEVQAQMPSLMAIYDDLHANPELSFMEVRSAGILAAEARKLGFEVTEKVGGTGVVA
VMKNGPGPIVMVRADMDALPVTEQTGLPGASKVRVTTAEGVETGVMHACGHDTHMAAWVGVARLMAANKDKWSGTLVMIG
QPAEERGAGARMMLEDGLYTRFPKPEYVLAFHDAAQFPAGMIGYAPGYALANVDSVDILVKGVGGHGAYPQTTKDPIVLA
SRIVGALQTLVSREISPLDSAVVTVGSFHAGAKHNIISDEARLQLTVRSYTDAVRDHLLDGIARIAKGEAIAAGMPEDRM
PVVTVQKDEYTPATFNTPEFTEDMATFLKTSFGETRVVKVPPVMGGEDFGRFARADKDIKSLIIWVGGVPQAEFDAAKKE
GRTLPSLHSPFWAPDAPAVISTATEALTAMAMKLMGQR

Specific function: Required But Not Essential For Aminobenzoyl-Glutamate Utilization. May Participate In Hydrolysis Of Aminobenzoyl- Glutamate To Aminobenzoate, Either Alone Or In Combination With Abgb. [C]

COG id: COG1473

COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Escherichia coli, GI87081880, Length=338, Percent_Identity=26.0355029585799, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787598, Length=376, Percent_Identity=25, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017439
- InterPro:   IPR010168
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: NA

Molecular weight: Translated: 46576; Mature: 46576

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRAFWMGAAALALAVPASAQTLRGEVQAQMPSLMAIYDDLHANPELSFMEVRSAGILAA
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCEEHH
EARKLGFEVTEKVGGTGVVAVMKNGPGPIVMVRADMDALPVTEQTGLPGASKVRVTTAEG
HHHHCCHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCC
VETGVMHACGHDTHMAAWVGVARLMAANKDKWSGTLVMIGQPAEERGAGARMMLEDGLYT
CCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHCCCCEEEEECCCCC
RFPKPEYVLAFHDAAQFPAGMIGYAPGYALANVDSVDILVKGVGGHGAYPQTTKDPIVLA
CCCCCCEEEEECCHHCCCCCHHCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCHHHHH
SRIVGALQTLVSREISPLDSAVVTVGSFHAGAKHNIISDEARLQLTVRSYTDAVRDHLLD
HHHHHHHHHHHHHCCCCCCHHHEEEECCCCCCCCCEECCCCEEEEEHHHHHHHHHHHHHH
GIARIAKGEAIAAGMPEDRMPVVTVQKDEYTPATFNTPEFTEDMATFLKTSFGETRVVKV
HHHHHHCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC
PPVMGGEDFGRFARADKDIKSLIIWVGGVPQAEFDAAKKEGRTLPSLHSPFWAPDAPAVI
CCCCCCHHHHHHHHCCHHHHEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
STATEALTAMAMKLMGQR
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMRAFWMGAAALALAVPASAQTLRGEVQAQMPSLMAIYDDLHANPELSFMEVRSAGILAA
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCEEHH
EARKLGFEVTEKVGGTGVVAVMKNGPGPIVMVRADMDALPVTEQTGLPGASKVRVTTAEG
HHHHCCHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCC
VETGVMHACGHDTHMAAWVGVARLMAANKDKWSGTLVMIGQPAEERGAGARMMLEDGLYT
CCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHCCCCEEEEECCCCC
RFPKPEYVLAFHDAAQFPAGMIGYAPGYALANVDSVDILVKGVGGHGAYPQTTKDPIVLA
CCCCCCEEEEECCHHCCCCCHHCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCHHHHH
SRIVGALQTLVSREISPLDSAVVTVGSFHAGAKHNIISDEARLQLTVRSYTDAVRDHLLD
HHHHHHHHHHHHHCCCCCCHHHEEEECCCCCCCCCEECCCCEEEEEHHHHHHHHHHHHHH
GIARIAKGEAIAAGMPEDRMPVVTVQKDEYTPATFNTPEFTEDMATFLKTSFGETRVVKV
HHHHHHCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC
PPVMGGEDFGRFARADKDIKSLIIWVGGVPQAEFDAAKKEGRTLPSLHSPFWAPDAPAVI
CCCCCCHHHHHHHHCCHHHHEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
STATEALTAMAMKLMGQR
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]