| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is ygjT [C]
Identifier: 103486432
GI number: 103486432
Start: 960946
End: 961932
Strand: Direct
Name: ygjT [C]
Synonym: Sala_0942
Alternate gene names: 103486432
Gene position: 960946-961932 (Clockwise)
Preceding gene: 103486430
Following gene: 103486434
Centisome position: 28.73
GC content: 59.98
Gene sequence:
>987_bases ATGGAGTTTCTGTTCGCCGACTGGCTGGGCACCCCGGCCTGGTTCTGGCTGGCCTTTATCGCCATCGTCATCGCGCTGAC CGCCTTTGACCTTGGCATTCTCAACAAGGAAAACAAGGAAATGGGGATCGGCGAGAGCCTCAAGCTCTCGGCGCTTTACA TCGGCATTGCCCTCGCGTTCGGCGCGTGGGTCTGGAGCGCGAAGGGCGGCGAGGCCGGCCTCCAATATTATACCGGCTTC TTTATCGAGAAGGCGCTGTCGATCGACAATATCTTTGTCATTTCGCTGATTTTCACGACGTTCGCGATTCCGCCGCGTTA CCAGTATCGCGCGCTGCTTTGGGGCATCGTCGCGGTGATCGTGCTGCGCGGGATCATGATCGCGGGCGGCGCGGCGCTGG TCAGCGAATATGGCTGGCTGCTTTATGTCTTCGCCGCCTTCCTCATCTTCACCGGCGTCAAGATGCTGTTTGCAAGCGAA AAGCCGATGGACGTTGCGGGCAATCCGGTCGTCAAATGGCTGTCGCGCCACATGCCGATCACAAACGAACTGCACGGCGA GCGCTTCTTCGTCCGCGTGCCCGACAGCAAGACGGGCAAGCTGGCGCTCGCGGCGACGCCGCTGTTCCTCGCGCTGGTCG TCATAAACCTCGCCGACCTGGTGTTCGCGGTCGACAGCGTGCCGGCGATCTTTGCGATCACCACGGACACCTTCATCGTC TATACGTCGAACATCATGGCGATCCTTGGCCTTCGCGCGCTCTACTTCGCCCTGTCGGCGATGGTGCATCGCTTCCATTA TCTCAAATATGCGCTTGCGCTGGTGCTTGTGTTCATCGGGTCGAAAATCTTCGTTGCCGATTTCATCCTCGGCAGCGACA AGTTCCCGCCGCTTGTCAGTCTTGGCGTGACCGTCGCGCTGATCGCGGGCGGCATCATCTGGTCGCTCGTCAAAACGCGC GAAGAGAAGGCGGCGCTGCGCCAGTAA
Upstream 100 bases:
>100_bases CGTCACGCGCCCCGTGCCCGCCCGCTAAACCGCCCGACCATCGACAGCCTCGTGCGCCGCCCAACGGTGGCGCGCGCGGC CTATCCAGGGAATCACCATC
Downstream 100 bases:
>100_bases AAATGTCCGCCGGAAGCCTTTTCGGGCTTCCGGCGGACAGGCTTTCCTCCCCAGGAAAGCGCGGGAGGCGCGGGACGATT GTGCAAGGCGTCCCGCGCCG
Product: integral membrane protein TerC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 328; Mature: 328
Protein sequence:
>328_residues MEFLFADWLGTPAWFWLAFIAIVIALTAFDLGILNKENKEMGIGESLKLSALYIGIALAFGAWVWSAKGGEAGLQYYTGF FIEKALSIDNIFVISLIFTTFAIPPRYQYRALLWGIVAVIVLRGIMIAGGAALVSEYGWLLYVFAAFLIFTGVKMLFASE KPMDVAGNPVVKWLSRHMPITNELHGERFFVRVPDSKTGKLALAATPLFLALVVINLADLVFAVDSVPAIFAITTDTFIV YTSNIMAILGLRALYFALSAMVHRFHYLKYALALVLVFIGSKIFVADFILGSDKFPPLVSLGVTVALIAGGIIWSLVKTR EEKAALRQ
Sequences:
>Translated_328_residues MEFLFADWLGTPAWFWLAFIAIVIALTAFDLGILNKENKEMGIGESLKLSALYIGIALAFGAWVWSAKGGEAGLQYYTGF FIEKALSIDNIFVISLIFTTFAIPPRYQYRALLWGIVAVIVLRGIMIAGGAALVSEYGWLLYVFAAFLIFTGVKMLFASE KPMDVAGNPVVKWLSRHMPITNELHGERFFVRVPDSKTGKLALAATPLFLALVVINLADLVFAVDSVPAIFAITTDTFIV YTSNIMAILGLRALYFALSAMVHRFHYLKYALALVLVFIGSKIFVADFILGSDKFPPLVSLGVTVALIAGGIIWSLVKTR EEKAALRQ >Mature_328_residues MEFLFADWLGTPAWFWLAFIAIVIALTAFDLGILNKENKEMGIGESLKLSALYIGIALAFGAWVWSAKGGEAGLQYYTGF FIEKALSIDNIFVISLIFTTFAIPPRYQYRALLWGIVAVIVLRGIMIAGGAALVSEYGWLLYVFAAFLIFTGVKMLFASE KPMDVAGNPVVKWLSRHMPITNELHGERFFVRVPDSKTGKLALAATPLFLALVVINLADLVFAVDSVPAIFAITTDTFIV YTSNIMAILGLRALYFALSAMVHRFHYLKYALALVLVFIGSKIFVADFILGSDKFPPLVSLGVTVALIAGGIIWSLVKTR EEKAALRQ
Specific function: Unknown
COG id: COG0861
COG function: function code P; Membrane protein TerC, possibly involved in tellurium resistance
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the terC family [H]
Homologues:
Organism=Escherichia coli, GI48994922, Length=325, Percent_Identity=42.1538461538462, Blast_Score=231, Evalue=4e-62,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005496 - InterPro: IPR022369 [H]
Pfam domain/function: PF03741 TerC [H]
EC number: NA
Molecular weight: Translated: 36081; Mature: 36081
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEFLFADWLGTPAWFWLAFIAIVIALTAFDLGILNKENKEMGIGESLKLSALYIGIALAF CCEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH GAWVWSAKGGEAGLQYYTGFFIEKALSIDNIFVISLIFTTFAIPPRYQYRALLWGIVAVI HHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH VLRGIMIAGGAALVSEYGWLLYVFAAFLIFTGVKMLFASEKPMDVAGNPVVKWLSRHMPI HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC TNELHGERFFVRVPDSKTGKLALAATPLFLALVVINLADLVFAVDSVPAIFAITTDTFIV CCCCCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEE YTSNIMAILGLRALYFALSAMVHRFHYLKYALALVLVFIGSKIFVADFILGSDKFPPLVS EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHH LGVTVALIAGGIIWSLVKTREEKAALRQ HHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MEFLFADWLGTPAWFWLAFIAIVIALTAFDLGILNKENKEMGIGESLKLSALYIGIALAF CCEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH GAWVWSAKGGEAGLQYYTGFFIEKALSIDNIFVISLIFTTFAIPPRYQYRALLWGIVAVI HHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH VLRGIMIAGGAALVSEYGWLLYVFAAFLIFTGVKMLFASEKPMDVAGNPVVKWLSRHMPI HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC TNELHGERFFVRVPDSKTGKLALAATPLFLALVVINLADLVFAVDSVPAIFAITTDTFIV CCCCCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEE YTSNIMAILGLRALYFALSAMVHRFHYLKYALALVLVFIGSKIFVADFILGSDKFPPLVS EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHH LGVTVALIAGGIIWSLVKTREEKAALRQ HHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11557893 [H]