Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is ygjT [C]

Identifier: 103486432

GI number: 103486432

Start: 960946

End: 961932

Strand: Direct

Name: ygjT [C]

Synonym: Sala_0942

Alternate gene names: 103486432

Gene position: 960946-961932 (Clockwise)

Preceding gene: 103486430

Following gene: 103486434

Centisome position: 28.73

GC content: 59.98

Gene sequence:

>987_bases
ATGGAGTTTCTGTTCGCCGACTGGCTGGGCACCCCGGCCTGGTTCTGGCTGGCCTTTATCGCCATCGTCATCGCGCTGAC
CGCCTTTGACCTTGGCATTCTCAACAAGGAAAACAAGGAAATGGGGATCGGCGAGAGCCTCAAGCTCTCGGCGCTTTACA
TCGGCATTGCCCTCGCGTTCGGCGCGTGGGTCTGGAGCGCGAAGGGCGGCGAGGCCGGCCTCCAATATTATACCGGCTTC
TTTATCGAGAAGGCGCTGTCGATCGACAATATCTTTGTCATTTCGCTGATTTTCACGACGTTCGCGATTCCGCCGCGTTA
CCAGTATCGCGCGCTGCTTTGGGGCATCGTCGCGGTGATCGTGCTGCGCGGGATCATGATCGCGGGCGGCGCGGCGCTGG
TCAGCGAATATGGCTGGCTGCTTTATGTCTTCGCCGCCTTCCTCATCTTCACCGGCGTCAAGATGCTGTTTGCAAGCGAA
AAGCCGATGGACGTTGCGGGCAATCCGGTCGTCAAATGGCTGTCGCGCCACATGCCGATCACAAACGAACTGCACGGCGA
GCGCTTCTTCGTCCGCGTGCCCGACAGCAAGACGGGCAAGCTGGCGCTCGCGGCGACGCCGCTGTTCCTCGCGCTGGTCG
TCATAAACCTCGCCGACCTGGTGTTCGCGGTCGACAGCGTGCCGGCGATCTTTGCGATCACCACGGACACCTTCATCGTC
TATACGTCGAACATCATGGCGATCCTTGGCCTTCGCGCGCTCTACTTCGCCCTGTCGGCGATGGTGCATCGCTTCCATTA
TCTCAAATATGCGCTTGCGCTGGTGCTTGTGTTCATCGGGTCGAAAATCTTCGTTGCCGATTTCATCCTCGGCAGCGACA
AGTTCCCGCCGCTTGTCAGTCTTGGCGTGACCGTCGCGCTGATCGCGGGCGGCATCATCTGGTCGCTCGTCAAAACGCGC
GAAGAGAAGGCGGCGCTGCGCCAGTAA

Upstream 100 bases:

>100_bases
CGTCACGCGCCCCGTGCCCGCCCGCTAAACCGCCCGACCATCGACAGCCTCGTGCGCCGCCCAACGGTGGCGCGCGCGGC
CTATCCAGGGAATCACCATC

Downstream 100 bases:

>100_bases
AAATGTCCGCCGGAAGCCTTTTCGGGCTTCCGGCGGACAGGCTTTCCTCCCCAGGAAAGCGCGGGAGGCGCGGGACGATT
GTGCAAGGCGTCCCGCGCCG

Product: integral membrane protein TerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MEFLFADWLGTPAWFWLAFIAIVIALTAFDLGILNKENKEMGIGESLKLSALYIGIALAFGAWVWSAKGGEAGLQYYTGF
FIEKALSIDNIFVISLIFTTFAIPPRYQYRALLWGIVAVIVLRGIMIAGGAALVSEYGWLLYVFAAFLIFTGVKMLFASE
KPMDVAGNPVVKWLSRHMPITNELHGERFFVRVPDSKTGKLALAATPLFLALVVINLADLVFAVDSVPAIFAITTDTFIV
YTSNIMAILGLRALYFALSAMVHRFHYLKYALALVLVFIGSKIFVADFILGSDKFPPLVSLGVTVALIAGGIIWSLVKTR
EEKAALRQ

Sequences:

>Translated_328_residues
MEFLFADWLGTPAWFWLAFIAIVIALTAFDLGILNKENKEMGIGESLKLSALYIGIALAFGAWVWSAKGGEAGLQYYTGF
FIEKALSIDNIFVISLIFTTFAIPPRYQYRALLWGIVAVIVLRGIMIAGGAALVSEYGWLLYVFAAFLIFTGVKMLFASE
KPMDVAGNPVVKWLSRHMPITNELHGERFFVRVPDSKTGKLALAATPLFLALVVINLADLVFAVDSVPAIFAITTDTFIV
YTSNIMAILGLRALYFALSAMVHRFHYLKYALALVLVFIGSKIFVADFILGSDKFPPLVSLGVTVALIAGGIIWSLVKTR
EEKAALRQ
>Mature_328_residues
MEFLFADWLGTPAWFWLAFIAIVIALTAFDLGILNKENKEMGIGESLKLSALYIGIALAFGAWVWSAKGGEAGLQYYTGF
FIEKALSIDNIFVISLIFTTFAIPPRYQYRALLWGIVAVIVLRGIMIAGGAALVSEYGWLLYVFAAFLIFTGVKMLFASE
KPMDVAGNPVVKWLSRHMPITNELHGERFFVRVPDSKTGKLALAATPLFLALVVINLADLVFAVDSVPAIFAITTDTFIV
YTSNIMAILGLRALYFALSAMVHRFHYLKYALALVLVFIGSKIFVADFILGSDKFPPLVSLGVTVALIAGGIIWSLVKTR
EEKAALRQ

Specific function: Unknown

COG id: COG0861

COG function: function code P; Membrane protein TerC, possibly involved in tellurium resistance

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the terC family [H]

Homologues:

Organism=Escherichia coli, GI48994922, Length=325, Percent_Identity=42.1538461538462, Blast_Score=231, Evalue=4e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005496
- InterPro:   IPR022369 [H]

Pfam domain/function: PF03741 TerC [H]

EC number: NA

Molecular weight: Translated: 36081; Mature: 36081

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFLFADWLGTPAWFWLAFIAIVIALTAFDLGILNKENKEMGIGESLKLSALYIGIALAF
CCEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
GAWVWSAKGGEAGLQYYTGFFIEKALSIDNIFVISLIFTTFAIPPRYQYRALLWGIVAVI
HHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
VLRGIMIAGGAALVSEYGWLLYVFAAFLIFTGVKMLFASEKPMDVAGNPVVKWLSRHMPI
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
TNELHGERFFVRVPDSKTGKLALAATPLFLALVVINLADLVFAVDSVPAIFAITTDTFIV
CCCCCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEE
YTSNIMAILGLRALYFALSAMVHRFHYLKYALALVLVFIGSKIFVADFILGSDKFPPLVS
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHH
LGVTVALIAGGIIWSLVKTREEKAALRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEFLFADWLGTPAWFWLAFIAIVIALTAFDLGILNKENKEMGIGESLKLSALYIGIALAF
CCEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
GAWVWSAKGGEAGLQYYTGFFIEKALSIDNIFVISLIFTTFAIPPRYQYRALLWGIVAVI
HHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
VLRGIMIAGGAALVSEYGWLLYVFAAFLIFTGVKMLFASEKPMDVAGNPVVKWLSRHMPI
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
TNELHGERFFVRVPDSKTGKLALAATPLFLALVVINLADLVFAVDSVPAIFAITTDTFIV
CCCCCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEE
YTSNIMAILGLRALYFALSAMVHRFHYLKYALALVLVFIGSKIFVADFILGSDKFPPLVS
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHH
LGVTVALIAGGIIWSLVKTREEKAALRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]