| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486385
Identifier: 103486385
GI number: 103486385
Start: 904119
End: 904943
Strand: Direct
Name: 103486385
Synonym: Sala_0895
Alternate gene names: NA
Gene position: 904119-904943 (Clockwise)
Preceding gene: 103486384
Following gene: 103486387
Centisome position: 27.03
GC content: 61.94
Gene sequence:
>825_bases ATGGCAAAGGATATTCTGGGCTACGCGGGCAAACGTGTCGTCGTCATGGGTTGCTTTTCGGGAACTGGCGAAGCTTGCGC GCGATTGCTGGTGGAACTGGGCGCCGAGGTGCACGGCGCCGACATCAAGCCCTCGCCGGTCGGCCTTGCTTCCTTCACTG AAGTCGATCTGAAAGACCCCGAGGCGATTGCCGCCGGTATCGCGAAGATCGGCGGCAAGATAGACGCCGTTTTCAACGTC TCCGGCCTGCCACAGACCTTTCCGGGCGAGGATGTCATTACGGTCAACTTCCTGGGCATTCGCGCATGGACCGAAGGCTG GATTCCGCACCTCAACCCAGGCGCCGCGATCGTATCCGTGTCGTCGCTCGGCGGCATGAAATGGCTGACCCGTCAGCCGC TGCTGCGCGAACTCCTCGCCATTACCGATTTCGACGAAGCGCGGAAATGGTATCGCGAACGCGCCGAGGAGATCGGCGAT CCCTATAGCCTTGCCAAGGAAGCGGTGAATACCTGGACCCAGGTTCGCGCCCCCGACCTGATCGGGCAGGACATCCGCAT CAATTGCACGATGCCCAGCCCCATCGACACGCCGATGCTTGGCGAATTTCGCAAGGTCGCCGGGGATGCGGTGCTCAGCG CCTTTGCCAAGGCAAAGGGACGCTATTCGACAGCCGAGGAACAGGCATTGCCGTTGATCCTGCTAAACAGCGATGCAGCA CGCTTCATCAGCGGGGTGTGCCTGCCCGTCGACGCGGGCCTGGCTGGCGGACTGGCGACGGGCGTGCTCGACATTCAGAA AATGATCGCCGAGGCGTCGGCTTGA
Upstream 100 bases:
>100_bases CCCTGGAACTCCCCGATCGATTTTTGACACTATGTCAATGGCGCGTCTTGTTCGATTTCTATTTGATTTTCGAGAAAAAC TAGAAGTGAGAGAGGGTGGT
Downstream 100 bases:
>100_bases CCGGCGCGGGGTCTGCTGAACGTCAGTCCCTGACGCCCAGCATCATCGCGAGGCTGTGCGCCGCTGCGGCTTTCAGACTG GCGTATCCGACGCGATCTTC
Product: 3-alpha-hydroxysteroid dehydrogenase
Products: NA
Alternate protein names: Short-Chain Dehydrogenase/Reductase SDR; NAD-Dependent Epimerase/Dehydratase; Oxidoreductase; Dehydrogenase/Reductase; 3-Oxoacyl-(Acyl-Carrier-Protein) Reductase; Short-Chain Type Dehydrogenase/Reductase; Oxidoreductase Short-Chain Dehydrogenase/Reductase Family; Oxidoreductase Short Chain Dehydrogenase/Reductase Family; Short Chain Dehydrogenase
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MAKDILGYAGKRVVVMGCFSGTGEACARLLVELGAEVHGADIKPSPVGLASFTEVDLKDPEAIAAGIAKIGGKIDAVFNV SGLPQTFPGEDVITVNFLGIRAWTEGWIPHLNPGAAIVSVSSLGGMKWLTRQPLLRELLAITDFDEARKWYRERAEEIGD PYSLAKEAVNTWTQVRAPDLIGQDIRINCTMPSPIDTPMLGEFRKVAGDAVLSAFAKAKGRYSTAEEQALPLILLNSDAA RFISGVCLPVDAGLAGGLATGVLDIQKMIAEASA
Sequences:
>Translated_274_residues MAKDILGYAGKRVVVMGCFSGTGEACARLLVELGAEVHGADIKPSPVGLASFTEVDLKDPEAIAAGIAKIGGKIDAVFNV SGLPQTFPGEDVITVNFLGIRAWTEGWIPHLNPGAAIVSVSSLGGMKWLTRQPLLRELLAITDFDEARKWYRERAEEIGD PYSLAKEAVNTWTQVRAPDLIGQDIRINCTMPSPIDTPMLGEFRKVAGDAVLSAFAKAKGRYSTAEEQALPLILLNSDAA RFISGVCLPVDAGLAGGLATGVLDIQKMIAEASA >Mature_273_residues AKDILGYAGKRVVVMGCFSGTGEACARLLVELGAEVHGADIKPSPVGLASFTEVDLKDPEAIAAGIAKIGGKIDAVFNVS GLPQTFPGEDVITVNFLGIRAWTEGWIPHLNPGAAIVSVSSLGGMKWLTRQPLLRELLAITDFDEARKWYRERAEEIGDP YSLAKEAVNTWTQVRAPDLIGQDIRINCTMPSPIDTPMLGEFRKVAGDAVLSAFAKAKGRYSTAEEQALPLILLNSDAAR FISGVCLPVDAGLAGGLATGVLDIQKMIAEASA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29035; Mature: 28904
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKDILGYAGKRVVVMGCFSGTGEACARLLVELGAEVHGADIKPSPVGLASFTEVDLKDP CCCCHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH EAIAAGIAKIGGKIDAVFNVSGLPQTFPGEDVITVNFLGIRAWTEGWIPHLNPGAAIVSV HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCHHEEEE SSLGGMKWLTRQPLLRELLAITDFDEARKWYRERAEEIGDPYSLAKEAVNTWTQVRAPDL HHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC IGQDIRINCTMPSPIDTPMLGEFRKVAGDAVLSAFAKAKGRYSTAEEQALPLILLNSDAA CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECCCHH RFISGVCLPVDAGLAGGLATGVLDIQKMIAEASA HHHCCCCEEECCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AKDILGYAGKRVVVMGCFSGTGEACARLLVELGAEVHGADIKPSPVGLASFTEVDLKDP CCCHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH EAIAAGIAKIGGKIDAVFNVSGLPQTFPGEDVITVNFLGIRAWTEGWIPHLNPGAAIVSV HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCHHEEEE SSLGGMKWLTRQPLLRELLAITDFDEARKWYRERAEEIGDPYSLAKEAVNTWTQVRAPDL HHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC IGQDIRINCTMPSPIDTPMLGEFRKVAGDAVLSAFAKAKGRYSTAEEQALPLILLNSDAA CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECCCHH RFISGVCLPVDAGLAGGLATGVLDIQKMIAEASA HHHCCCCEEECCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA